PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000339137	[[88835179, 88836648], [88842769, 88842945], [88844452, 88844544], [88874464, 88874572]]	[[88836602, 88836648], [88842769, 88842945], [88844452, 88844518]]
ENST00000376001	[[88842225, 88842311], [88842769, 88842945], [88844452, 88844544], [88874464, 88874519]]	[[88842247, 88842311], [88842769, 88842945], [88844452, 88844518]]
ENST00000469914	[[88836384, 88836648], [88844452, 88844544]]	None
NM_001276368	[[88835179, 88836648], [88842769, 88842945], [88844452, 88844544], [88851996, 88852075], [88870901, 88870948]]	[[88836602, 88836648], [88842769, 88842945], [88844452, 88844518]]
NM_001276367	[[88835179, 88836648], [88842769, 88842945], [88844452, 88844544], [88851996, 88852075], [88874464, 88874572]]	[[88836602, 88836648], [88842769, 88842945], [88844452, 88844518]]
NM_001276366	[[88835179, 88836648], [88842769, 88842945], [88844452, 88844544], [88874464, 88874572]]	[[88836602, 88836648], [88842769, 88842945], [88844452, 88844518]]

Promoter

Chrom	Start	End	Description
chr9	88874566	88874577	CAGE_peak_1_at_C9orf153_5end
chr9	88874591	88874598	CAGE_peak_2_at_C9orf153_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I086280	86280960	86283758	2.07	[{'connected_gene': 'ISCA1', 'score': 550.77}, {'connected_gene': 'C9orf153', 'score': 28.8}, {'connected_gene': 'GAS1RR', 'score': 11.28}, {'connected_gene': 'RN7SKP264', 'score': 11.23}, {'connected_gene': 'LOC389765', 'score': 10.09}, {'connected_gene': 'LOC100130049', 'score': 9.99}, {'connected_gene': 'GAS1', 'score': 9.83}, {'connected_gene': 'ZCCHC6', 'score': 6.06}]
chr9	GH09I086405	86405209	86408415	1.42	[{'connected_gene': 'ZCCHC6', 'score': 13.46}, {'connected_gene': 'GOLM1', 'score': 5.4}, {'connected_gene': 'C9orf153', 'score': 4.35}, {'connected_gene': 'GC09P086413', 'score': 0.44}, {'connected_gene': 'RPS6P13', 'score': 0.29}]
chr9	GH09I086337	86337066	86341078	0.95	[{'connected_gene': 'ZCCHC6', 'score': 7.58}, {'connected_gene': 'C9orf153', 'score': 5.36}, {'connected_gene': 'GC09M086340', 'score': 0.77}, {'connected_gene': 'ISCA1', 'score': 0.22}]
chr9	GH09I086284	86284553	86285855	0.66	[{'connected_gene': 'ZCCHC6', 'score': 6.13}, {'connected_gene': 'C9orf153', 'score': 4.66}, {'connected_gene': 'ISCA1', 'score': 0.77}, {'connected_gene': 'GC09M086340', 'score': 0.22}]
chr9	GH09I086349	86349966	86356197	2.06	[{'connected_gene': 'ZCCHC6', 'score': 556.89}, {'connected_gene': 'C9orf153', 'score': 15.15}, {'connected_gene': 'RN7SKP264', 'score': 10.05}, {'connected_gene': 'LOC389765', 'score': 9.85}, {'connected_gene': 'GC09M086340', 'score': 0.39}]
chr9	GH09I086062	86062505	86064183	0.84	[{'connected_gene': 'GOLM1', 'score': 16.21}, {'connected_gene': 'C9orf153', 'score': 9.62}, {'connected_gene': 'RN7SKP264', 'score': 9.62}, {'connected_gene': 'GC09M086071', 'score': 0.39}, {'connected_gene': 'PIR41548', 'score': 0.31}]
chr9	GH09I086287	86287001	86287441	0.98	[{'connected_gene': 'C9orf153', 'score': 19.67}, {'connected_gene': 'ISCA1', 'score': 0.77}, {'connected_gene': 'GC09M086340', 'score': 0.23}]
chr9	GH09I086322	86322676	86324675	0.46	[{'connected_gene': 'C9orf153', 'score': 19.89}, {'connected_gene': 'ZCCHC6', 'score': 6.19}, {'connected_gene': 'GC09M086340', 'score': 0.37}, {'connected_gene': 'ISCA1', 'score': 0.26}]
chr9	GH09I086320	86320920	86322224	0.38	[{'connected_gene': 'C9orf153', 'score': 19.57}, {'connected_gene': 'ZCCHC6', 'score': 7.31}, {'connected_gene': 'GC09M086340', 'score': 0.37}, {'connected_gene': 'ISCA1', 'score': 0.28}]
chr9	GH09I086359	86359001	86359901	0.56	[{'connected_gene': 'C9orf153', 'score': 5.24}, {'connected_gene': 'ZCCHC6', 'score': 2.72}, {'connected_gene': 'RPS6P13', 'score': 0.37}]
chr9	GH09I086348	86348115	86349235	1.13	[{'connected_gene': 'C9orf153', 'score': 13.61}, {'connected_gene': 'NAA35', 'score': 11.59}, {'connected_gene': 'GAS1RR', 'score': 10.17}, {'connected_gene': 'ZCCHC6', 'score': 0.44}, {'connected_gene': 'GC09M086340', 'score': 0.44}]
chr9	GH09I086256	86256025	86256154	0.24	[{'connected_gene': 'C9orf153', 'score': 71.52}, {'connected_gene': 'GOLM1', 'score': 10.3}, {'connected_gene': 'RN7SKP264', 'score': 0.77}, {'connected_gene': 'ENSG00000270688', 'score': 0.31}]
chr9	GH09I086368	86368643	86369815	0.94	[{'connected_gene': 'C9orf153', 'score': 13.08}, {'connected_gene': 'RPS6P13', 'score': 0.44}, {'connected_gene': 'ZCCHC6', 'score': 0.39}]
chr9	GH09I086259	86259647	86259706	0.5	[{'connected_gene': 'C9orf153', 'score': 550.77}, {'connected_gene': 'RN7SKP264', 'score': 550.77}, {'connected_gene': 'ISCA1', 'score': 0.34}]
chr9	GH09I086246	86246801	86247234	0.96	[{'connected_gene': 'C9orf153', 'score': 0.39}, {'connected_gene': 'RN7SKP264', 'score': 0.39}, {'connected_gene': 'ENSG00000270688', 'score': 0.37}, {'connected_gene': 'GC09P086188', 'score': 0.22}]
chr9	GH09I086181	86181226	86182416	0.59	[{'connected_gene': 'C9orf153', 'score': 10.58}, {'connected_gene': 'RN7SKP264', 'score': 10.58}, {'connected_gene': 'GC09P086188', 'score': 0.44}, {'connected_gene': 'GC09P086155', 'score': 0.31}]
chr9	GH09I086254	86254110	86254169	0.5	[{'connected_gene': 'C9orf153', 'score': 550.44}, {'connected_gene': 'RN7SKP264', 'score': 0.77}, {'connected_gene': 'ENSG00000270688', 'score': 0.31}]
chr9	GH09I086076	86076989	86078242	0.2	[{'connected_gene': 'PIR41563', 'score': 550.77}, {'connected_gene': 'GOLM1', 'score': 21.49}, {'connected_gene': 'C9orf153', 'score': 10.07}, {'connected_gene': 'RN7SKP264', 'score': 10.07}, {'connected_gene': 'GC09M086071', 'score': 0.77}]
chr9	GH09I086187	86187186	86187455	0.52	[{'connected_gene': 'GC09P086188', 'score': 550.77}, {'connected_gene': 'C9orf153', 'score': 10.59}, {'connected_gene': 'RN7SKP264', 'score': 10.59}, {'connected_gene': 'GC09P086155', 'score': 0.29}]