PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000345080	[[105404922, 105405135], [105405973, 105406161], [105474172, 105474357], [105526288, 105531207]]	[[105405125, 105405135], [105405973, 105406161], [105474172, 105474357], [105526288, 105526658]]
NM_001004317	[[105404922, 105405135], [105405973, 105406161], [105474172, 105474357], [105526288, 105531207]]	[[105405125, 105405135], [105405973, 105406161], [105474172, 105474357], [105526288, 105526658]]

Promoter

Chrom	Start	End	Description
chr6	105404899	105404931	CAGE_peak_3_at_LIN28B_5end
chr6	105404974	105404989	CAGE_peak_2_at_LIN28B_5end
chr6	105405020	105405033	CAGE_peak_7_at_LIN28B_5end
chr6	105405037	105405048	CAGE_peak_10_at_LIN28B_5end
chr6	105405517	105405559	CAGE_peak_1_at_LIN28B_5end
chr6	105405563	105405584	CAGE_peak_4_at_LIN28B_5end
chr6	105405976	105405987	CAGE_peak_9_at_LIN28B_5end
chr6	105405988	105406001	CAGE_peak_6_at_LIN28B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I104524	104524969	104525038	0.24	[{'connected_gene': 'HACE1', 'score': 5.67}, {'connected_gene': 'LIN28B', 'score': 1.6}, {'connected_gene': 'LOC105377918', 'score': 0.77}, {'connected_gene': 'GC06P104436', 'score': 0.17}]
chr6	GH06I104907	104907299	104909323	0.46	[{'connected_gene': 'HACE1', 'score': 7.93}, {'connected_gene': 'GC06M104892', 'score': 0.44}, {'connected_gene': 'LIN28B', 'score': 0.31}, {'connected_gene': 'LIN28B-AS1', 'score': 0.29}]
chr6	GH06I104565	104565108	104565471	0.22	[{'connected_gene': 'HACE1', 'score': 5.04}, {'connected_gene': 'LIN28B', 'score': 1.23}, {'connected_gene': 'GC06P104562', 'score': 0.77}, {'connected_gene': 'GC06P104610', 'score': 0.25}]
chr6	GH06I104640	104640840	104640982	0.22	[{'connected_gene': 'HACE1', 'score': 7.55}, {'connected_gene': 'LIN28B', 'score': 1.9}, {'connected_gene': 'GC06P104610', 'score': 0.29}, {'connected_gene': 'GC06M104657', 'score': 0.29}]
chr6	GH06I104630	104630220	104630547	0.22	[{'connected_gene': 'HACE1', 'score': 3.8}, {'connected_gene': 'LIN28B', 'score': 3.21}, {'connected_gene': 'GC06P104610', 'score': 0.37}, {'connected_gene': 'GC06M104657', 'score': 0.26}]
chr6	GH06I104968	104968999	104970138	0.74	[{'connected_gene': 'HACE1', 'score': 4.98}, {'connected_gene': 'LIN28B-AS1', 'score': 0.31}, {'connected_gene': 'LIN28B', 'score': 0.29}, {'connected_gene': 'RNU6-1106P', 'score': 0.18}, {'connected_gene': 'GC06M105046', 'score': 0.18}]
chr6	GH06I105092	105092403	105092416	0.24	[{'connected_gene': 'PREP', 'score': 11.23}, {'connected_gene': 'POPDC3', 'score': 11.03}, {'connected_gene': 'HACE1', 'score': 1.5}, {'connected_gene': 'LIN28B', 'score': 1.35}, {'connected_gene': 'GC06P105082', 'score': 0.44}, {'connected_gene': 'BVES-AS1', 'score': 0.26}]
chr6	GH06I104995	104995440	104995502	0.22	[{'connected_gene': 'LIN28B', 'score': 4.93}, {'connected_gene': 'HACE1', 'score': 2.79}, {'connected_gene': 'RNU6-1106P', 'score': 0.23}, {'connected_gene': 'GC06M105046', 'score': 0.23}, {'connected_gene': 'LIN28B-AS1', 'score': 0.23}]
chr6	GH06I104612	104612941	104614390	0.6	[{'connected_gene': 'LIN28B', 'score': 2.84}, {'connected_gene': 'HACE1', 'score': 2.44}, {'connected_gene': 'GC06P104610', 'score': 0.77}, {'connected_gene': 'GC06M104657', 'score': 0.22}]
chr6	GH06I104951	104951660	104960177	2.76	[{'connected_gene': 'LIN28B', 'score': 556.73}, {'connected_gene': 'LIN28B-AS1', 'score': 6.55}, {'connected_gene': 'HACE1', 'score': 4.98}, {'connected_gene': 'RNU6-1106P', 'score': 0.17}, {'connected_gene': 'GC06M105046', 'score': 0.17}]
chr6	GH06I104624	104624983	104626748	0.82	[{'connected_gene': 'LIN28B', 'score': 1.36}, {'connected_gene': 'GC06P104610', 'score': 0.37}, {'connected_gene': 'GC06M104657', 'score': 0.25}]
chr6	GH06I105045	105045666	105045815	0.7	[{'connected_gene': 'RNU6-1106P', 'score': 550.77}, {'connected_gene': 'GC06M105046', 'score': 550.77}, {'connected_gene': 'GC06P105082', 'score': 0.28}, {'connected_gene': 'LIN28B', 'score': 0.14}]
chr6	GH06I105051	105051334	105052711	0.57	[{'connected_gene': 'RNU6-1106P', 'score': 0.44}, {'connected_gene': 'GC06M105046', 'score': 0.44}, {'connected_gene': 'GC06P105082', 'score': 0.29}, {'connected_gene': 'LIN28B', 'score': 0.13}]
chr6	GH06I105038	105038366	105038515	0.43	[{'connected_gene': 'RNU6-1106P', 'score': 0.44}, {'connected_gene': 'GC06M105046', 'score': 0.44}, {'connected_gene': 'LIN28B-AS1', 'score': 0.15}, {'connected_gene': 'LIN28B', 'score': 0.15}]
chr6	GH06I105030	105030122	105030498	0.22	[{'connected_gene': 'RNU6-1106P', 'score': 0.37}, {'connected_gene': 'GC06M105046', 'score': 0.37}, {'connected_gene': 'LIN28B-AS1', 'score': 0.17}, {'connected_gene': 'LIN28B', 'score': 0.16}]
chr6	GH06I105024	105024574	105025273	0.2	[{'connected_gene': 'RNU6-1106P', 'score': 0.34}, {'connected_gene': 'GC06M105046', 'score': 0.34}, {'connected_gene': 'LIN28B-AS1', 'score': 0.18}, {'connected_gene': 'LIN28B', 'score': 0.17}]
chr6	GH06I104940	104940015	104942149	1.95	[{'connected_gene': 'LIN28B-AS1', 'score': 556.99}, {'connected_gene': 'HACE1', 'score': 5.51}, {'connected_gene': 'LIN28B', 'score': 0.77}]
chr6	GH06I104970	104970201	104970400	0.74	[{'connected_gene': 'LIN28B-AS1', 'score': 0.31}, {'connected_gene': 'LIN28B', 'score': 0.29}, {'connected_gene': 'RNU6-1106P', 'score': 0.18}, {'connected_gene': 'GC06M105046', 'score': 0.18}]
chr6	GH06I104610	104610448	104610780	0.22	[{'connected_gene': 'GC06P104610', 'score': 550.77}, {'connected_gene': 'HACE1', 'score': 2.54}, {'connected_gene': 'LIN28B', 'score': 1.82}, {'connected_gene': 'GC06M104657', 'score': 0.21}]