PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000294671	[[89597433, 89598086], [89598940, 89599134], [89607228, 89607331], [89613249, 89613462], [89614974, 89615255], [89616012, 89616258], [89617950, 89618147], [89618350, 89618460], [89630413, 89630541], [89637428, 89637637], [89641603, 89641723]]	[[89597831, 89598086], [89598940, 89599134], [89607228, 89607331], [89613249, 89613462], [89614974, 89615255], [89616012, 89616258], [89617950, 89618147], [89618350, 89618460], [89630413, 89630541], [89637428, 89637618]]
NM_207398	[[89597433, 89598086], [89598940, 89599134], [89607228, 89607331], [89613249, 89613462], [89614974, 89615255], [89616012, 89616258], [89617950, 89618147], [89618350, 89618460], [89630413, 89630541], [89637428, 89637637], [89641603, 89641723]]	[[89597831, 89598086], [89598940, 89599134], [89607228, 89607331], [89613249, 89613462], [89614974, 89615255], [89616012, 89616258], [89617950, 89618147], [89618350, 89618460], [89630413, 89630541], [89637428, 89637618]]

Promoter

Chrom	Start	End	Description
chr1	89641680	89641701	CAGE_peak_1_at_GBP7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I088990	88990547	88994566	2.49	[{'connected_gene': 'KYAT3', 'score': 550.77}, {'connected_gene': 'RBMXL1', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 86.11}, {'connected_gene': 'GBP5', 'score': 10.91}, {'connected_gene': 'GBP6', 'score': 10.8}, {'connected_gene': 'GBP7', 'score': 5.12}, {'connected_gene': 'PTGES3P1', 'score': 4.75}, {'connected_gene': 'GC01M088952', 'score': 0.28}]
chr1	GH01I089113	89113557	89116007	0.31	[{'connected_gene': 'GBP3', 'score': 20.06}, {'connected_gene': 'GBP7', 'score': 10.72}, {'connected_gene': 'GBP5', 'score': 10.12}, {'connected_gene': 'PTGES3P1', 'score': 0.44}, {'connected_gene': 'LOC105378842', 'score': 0.39}, {'connected_gene': 'GBP2', 'score': 0.28}]
chr1	GH01I089259	89259170	89263271	0.83	[{'connected_gene': 'GBP3', 'score': 12.41}, {'connected_gene': 'GBP7', 'score': 5.4}, {'connected_gene': 'GBP5', 'score': 0.39}, {'connected_gene': 'LOC100421401', 'score': 0.34}]
chr1	GH01I089081	89081001	89081400	0.72	[{'connected_gene': 'GBP3', 'score': 22.99}, {'connected_gene': 'GBP5', 'score': 10.99}, {'connected_gene': 'GBP7', 'score': 10.39}, {'connected_gene': 'RBMXL1', 'score': 4.52}, {'connected_gene': 'GBP1', 'score': 0.37}, {'connected_gene': 'GC01M089104', 'score': 0.34}, {'connected_gene': 'LOC105378841', 'score': 0.25}]
chr1	GH01I089051	89051339	89052801	0.66	[{'connected_gene': 'GBP3', 'score': 49.53}, {'connected_gene': 'GBP5', 'score': 10.1}, {'connected_gene': 'GBP7', 'score': 9.51}, {'connected_gene': 'RBMXL1', 'score': 4.64}, {'connected_gene': 'GC01M089045', 'score': 0.44}, {'connected_gene': 'GBP1', 'score': 0.39}, {'connected_gene': 'LOC105378841', 'score': 0.37}]
chr1	GH01I089048	89048351	89048718	0.2	[{'connected_gene': 'GBP3', 'score': 11.52}, {'connected_gene': 'GBP5', 'score': 10.1}, {'connected_gene': 'GBP7', 'score': 9.51}, {'connected_gene': 'GC01M089045', 'score': 0.77}, {'connected_gene': 'LOC105378841', 'score': 0.39}, {'connected_gene': 'GBP1', 'score': 0.37}]
chr1	GH01I089175	89175993	89176052	0.82	[{'connected_gene': 'GBP7', 'score': 550.77}, {'connected_gene': 'GBP2', 'score': 0.31}, {'connected_gene': 'LOC105378842', 'score': 0.25}]
chr1	GH01I089103	89103031	89110672	0.56	[{'connected_gene': 'PTGES3P1', 'score': 556.21}, {'connected_gene': 'GBP7', 'score': 35.74}, {'connected_gene': 'GBP3', 'score': 23.45}, {'connected_gene': 'GBP6', 'score': 10.7}, {'connected_gene': 'LOC100421401', 'score': 10.26}, {'connected_gene': 'GBP5', 'score': 10.21}, {'connected_gene': 'GC01M089104', 'score': 0.77}, {'connected_gene': 'LOC105378842', 'score': 0.34}, {'connected_gene': 'GBP2', 'score': 0.26}]
chr1	GH01I089124	89124263	89128187	2.05	[{'connected_gene': 'GBP2', 'score': 550.34}, {'connected_gene': 'GBP7', 'score': 37.36}, {'connected_gene': 'GBP3', 'score': 20.85}, {'connected_gene': 'GBP4', 'score': 11.87}, {'connected_gene': 'GBP5', 'score': 11.2}, {'connected_gene': 'PTGES3P1', 'score': 5.14}, {'connected_gene': 'LOC105378842', 'score': 0.77}]
chr1	GH01I089063	89063609	89066309	1.68	[{'connected_gene': 'GBP1', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 24.38}, {'connected_gene': 'GBP5', 'score': 10.88}, {'connected_gene': 'PKN2', 'score': 9.99}, {'connected_gene': 'GBP7', 'score': 9.59}, {'connected_gene': 'PTGES3P1', 'score': 4.41}, {'connected_gene': 'GC01M089045', 'score': 0.37}, {'connected_gene': 'LOC105378841', 'score': 0.29}]
chr1	GH01I089069	89069665	89070800	1.04	[{'connected_gene': 'GBP1', 'score': 47.24}, {'connected_gene': 'GBP5', 'score': 29.84}, {'connected_gene': 'GBP7', 'score': 26.06}, {'connected_gene': 'GBP4', 'score': 24.99}, {'connected_gene': 'GBP2', 'score': 11.45}, {'connected_gene': 'GBP6', 'score': 10.26}, {'connected_gene': 'GBP3', 'score': 9.61}, {'connected_gene': 'GTF2B', 'score': 6.02}, {'connected_gene': 'GC01M089104', 'score': 0.29}, {'connected_gene': 'LOC105378841', 'score': 0.28}]
chr1	GH01I089277	89277765	89280569	1.09	[{'connected_gene': 'GBP1', 'score': 35.51}, {'connected_gene': 'GBP5', 'score': 32.1}, {'connected_gene': 'GBP4', 'score': 29.22}, {'connected_gene': 'GBP2', 'score': 12.04}, {'connected_gene': 'LOC100421401', 'score': 10.69}, {'connected_gene': 'GBP7', 'score': 9.72}, {'connected_gene': 'GTF2B', 'score': 5.74}, {'connected_gene': 'LRRC8C', 'score': 2.83}, {'connected_gene': 'KYAT3', 'score': 1.73}, {'connected_gene': 'GBP3', 'score': 1.7}, {'connected_gene': 'GC01P089283', 'score': 0.77}]
chr1	GH01I089265	89265603	89266856	0.49	[{'connected_gene': 'GBP5', 'score': 6.37}, {'connected_gene': 'GBP7', 'score': 5.35}, {'connected_gene': 'LOC100421401', 'score': 0.31}]
chr1	GH01I089123	89123001	89123200	0.4	[{'connected_gene': 'GBP5', 'score': 11.24}, {'connected_gene': 'GBP2', 'score': 11.18}, {'connected_gene': 'GBP4', 'score': 10.97}, {'connected_gene': 'GBP7', 'score': 10.36}, {'connected_gene': 'KYAT3', 'score': 4.48}, {'connected_gene': 'LOC105378842', 'score': 0.44}, {'connected_gene': 'PTGES3P1', 'score': 0.37}]
chr1	GH01I089421	89421907	89422279	0.29	[{'connected_gene': 'GBP5', 'score': 18.36}, {'connected_gene': 'GBP4', 'score': 18.19}, {'connected_gene': 'GBP2', 'score': 17.08}, {'connected_gene': 'GBP1', 'score': 15.62}, {'connected_gene': 'GBP7', 'score': 9.38}, {'connected_gene': 'LRRC8C', 'score': 8.92}, {'connected_gene': 'LRRC8B', 'score': 5.62}, {'connected_gene': 'GBP3', 'score': 3.8}, {'connected_gene': 'PIR33822', 'score': 0.44}, {'connected_gene': 'GBP1P1', 'score': 0.39}]
chr1	GH01I089293	89293338	89295648	0.52	[{'connected_gene': 'GBP5', 'score': 11.49}, {'connected_gene': 'LOC100421401', 'score': 9.93}, {'connected_gene': 'GBP7', 'score': 9.49}, {'connected_gene': 'GC01P089291', 'score': 0.77}, {'connected_gene': 'ENSG00000233235', 'score': 0.29}]
chr1	GH01I089197	89197556	89201698	2.06	[{'connected_gene': 'GBP4', 'score': 550.77}, {'connected_gene': 'ENSG00000284734', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 22.67}, {'connected_gene': 'GBP7', 'score': 14.98}, {'connected_gene': 'ENSG00000284637', 'score': 0.77}]
chr1	GH01I089276	89276798	89276947	0.58	[{'connected_gene': 'GBP4', 'score': 10.76}, {'connected_gene': 'GBP7', 'score': 9.72}, {'connected_gene': 'GBP5', 'score': 7.5}, {'connected_gene': 'GC01P089283', 'score': 0.44}, {'connected_gene': 'LOC100421401', 'score': 0.28}]
chr1	GH01I089128	89128396	89130169	1.32	[{'connected_gene': 'LOC105378842', 'score': 550.77}, {'connected_gene': 'GBP1', 'score': 45.8}, {'connected_gene': 'GBP5', 'score': 33.01}, {'connected_gene': 'GBP4', 'score': 28.25}, {'connected_gene': 'GBP2', 'score': 16.77}, {'connected_gene': 'GBP7', 'score': 10.97}, {'connected_gene': 'GTF2B', 'score': 8.76}, {'connected_gene': 'GBP3', 'score': 7.12}, {'connected_gene': 'PTGES3P1', 'score': 4.75}]
chr1	GH01I089130	89130201	89130600	0.51	[{'connected_gene': 'LOC105378842', 'score': 550.77}, {'connected_gene': 'GBP4', 'score': 11.51}, {'connected_gene': 'GBP7', 'score': 10.71}, {'connected_gene': 'GBP3', 'score': 5.01}, {'connected_gene': 'GBP2', 'score': 0.34}]
chr1	GH01I089043	89043758	89046836	1.09	[{'connected_gene': 'GC01M089045', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 55.37}, {'connected_gene': 'GBP5', 'score': 11.25}, {'connected_gene': 'GBP7', 'score': 10.75}, {'connected_gene': 'RBMXL1', 'score': 4.66}, {'connected_gene': 'LOC105378841', 'score': 0.39}]
chr1	GH01I089001	89001251	89001492	0.26	[{'connected_gene': 'GC01P089002', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 24.37}, {'connected_gene': 'GBP5', 'score': 10.39}, {'connected_gene': 'GBP7', 'score': 9.74}, {'connected_gene': 'GTF2B', 'score': 1.37}, {'connected_gene': 'GBP2', 'score': 1.26}, {'connected_gene': 'KYAT3', 'score': 0.44}, {'connected_gene': 'RBMXL1', 'score': 0.44}]
chr1	GH01I089047	89047113	89047419	0.72	[{'connected_gene': 'GC01M089045', 'score': 550.77}, {'connected_gene': 'GBP5', 'score': 10.1}, {'connected_gene': 'GBP7', 'score': 9.51}, {'connected_gene': 'LOC105378841', 'score': 0.39}, {'connected_gene': 'GBP1', 'score': 0.37}]