PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000466994	[[6265534, 6266161], [6266255, 6266362], [6266595, 6266786], [6267438, 6268367]]	None
ENST00000484435	[[6266188, 6266362], [6266595, 6266786], [6267438, 6267624]]	None
ENST00000377948	[[6266188, 6266362], [6266595, 6266786], [6267438, 6267571], [6268940, 6269085], [6269174, 6269256], [6269327, 6269403], [6269473, 6269599], [6269983, 6270030], [6270282, 6270355], [6270429, 6270498], [6271926, 6272113], [6272290, 6272476], [6272741, 6272793], [6273125, 6273243], [6278348, 6278429], [6279295, 6281351]]	[[6269527, 6269599], [6269983, 6270030], [6270282, 6270355], [6270429, 6270498], [6271926, 6272100]]
ENST00000377939	[[6266235, 6266362], [6266595, 6266786], [6267438, 6267571], [6268940, 6269085], [6269174, 6269256], [6269327, 6269403], [6269473, 6269599], [6269983, 6270030], [6270282, 6270355], [6270429, 6270498], [6270929, 6270998], [6271080, 6271178], [6271926, 6272113], [6272290, 6272476], [6272741, 6272793], [6273125, 6273243], [6278348, 6278429], [6279295, 6281359]]	[[6266595, 6266786], [6267438, 6267571], [6268940, 6269085], [6269174, 6269256], [6269327, 6269403], [6269473, 6269599], [6269983, 6270030], [6270282, 6270355], [6270429, 6270498], [6270929, 6270998], [6271080, 6271178], [6271926, 6272113], [6272290, 6272476], [6272741, 6272793], [6273125, 6273243], [6278348, 6278429], [6279295, 6279467]]
ENST00000485539	[[6268677, 6269085], [6269174, 6269256], [6269327, 6269599], [6269983, 6270030], [6270282, 6270355], [6270429, 6270960]]	None
ENST00000496676	[[6268919, 6269085], [6269473, 6269599], [6269983, 6270030], [6270282, 6270355], [6270429, 6270498], [6271926, 6272113], [6272277, 6272476], [6272741, 6273243], [6278348, 6278429], [6279295, 6280865]]	None
ENST00000463453	[[6270961, 6270998], [6271080, 6271178], [6271982, 6272113]]	None
ENST00000496329	[[6270997, 6271178], [6271926, 6271976]]	None
ENST00000492476	[[6271094, 6271178], [6271926, 6272113], [6272290, 6272476], [6272741, 6272896]]	None
ENST00000483336	[[6272797, 6272963], [6273125, 6273243], [6278348, 6278429], [6279295, 6279403]]	None
NM_207396	[[6266188, 6266362], [6266595, 6266786], [6267438, 6267571], [6268940, 6269085], [6269174, 6269256], [6269327, 6269403], [6269473, 6269599], [6269983, 6270030], [6270282, 6270355], [6270429, 6270498], [6270929, 6270998], [6271080, 6271178], [6271926, 6272113], [6272290, 6272476], [6272741, 6272793], [6273125, 6273243], [6278348, 6278429], [6279295, 6281359]]	[[6266595, 6266786], [6267438, 6267571], [6268940, 6269085], [6269174, 6269256], [6269327, 6269403], [6269473, 6269599], [6269983, 6270030], [6270282, 6270355], [6270429, 6270498], [6270929, 6270998], [6271080, 6271178], [6271926, 6272113], [6272290, 6272476], [6272741, 6272793], [6273125, 6273243], [6278348, 6278429], [6279295, 6279467]]

Promoter

Chrom	Start	End	Description
chr1	6266137	6266204	CAGE_peak_1_at_RNF207_5end
chr1	6266228	6266239	CAGE_peak_5_at_RNF207_5end
chr1	6268974	6268994	CAGE_peak_3_at_RNF207_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I006170	6170642	6172200	0.93	[{'connected_gene': 'CHD5', 'score': 21.31}, {'connected_gene': 'KCNAB2', 'score': 12.24}, {'connected_gene': 'RNF207', 'score': 9.96}, {'connected_gene': 'ICMT', 'score': 4.84}, {'connected_gene': 'PLEKHG5', 'score': 1.57}, {'connected_gene': 'LOC105376687', 'score': 0.28}]
chr1	GH01I006058	6058503	6059710	0.96	[{'connected_gene': 'CHD5', 'score': 11.37}, {'connected_gene': 'RNF207', 'score': 10.21}, {'connected_gene': 'LOC102724450', 'score': 10.21}, {'connected_gene': 'RPL22', 'score': 10.21}, {'connected_gene': 'NPHP4', 'score': 4.65}, {'connected_gene': 'GC01M006038', 'score': 0.37}, {'connected_gene': 'KCNAB2', 'score': 0.2}, {'connected_gene': 'LOC105376687', 'score': 0.19}]
chr1	GH01I006069	6069534	6070762	0.56	[{'connected_gene': 'CHD5', 'score': 11.11}, {'connected_gene': 'RNF207', 'score': 10.01}, {'connected_gene': 'LOC102724450', 'score': 10.01}, {'connected_gene': 'RPL22', 'score': 10.01}, {'connected_gene': 'GC01M006038', 'score': 0.29}, {'connected_gene': 'LOC105376687', 'score': 0.21}, {'connected_gene': 'KCNAB2', 'score': 0.18}]
chr1	GH01I006426	6426027	6428556	0.85	[{'connected_gene': 'ESPN', 'score': 23.9}, {'connected_gene': 'RPL22', 'score': 10.7}, {'connected_gene': 'RNF207', 'score': 10.7}, {'connected_gene': 'LOC102724450', 'score': 10.7}, {'connected_gene': 'ACOT7', 'score': 6.25}, {'connected_gene': 'MIR4252', 'score': 0.77}]
chr1	GH01I006367	6367114	6369020	0.43	[{'connected_gene': 'ESPN', 'score': 21.97}, {'connected_gene': 'RPL22', 'score': 10.83}, {'connected_gene': 'RNF207', 'score': 10.82}, {'connected_gene': 'LOC102724450', 'score': 10.82}, {'connected_gene': 'ACOT7', 'score': 4.98}, {'connected_gene': 'ENSG00000271746', 'score': 0.31}, {'connected_gene': 'GC01P006262', 'score': 0.14}]
chr1	GH01I006422	6422737	6425891	1.62	[{'connected_gene': 'ESPN', 'score': 579.78}, {'connected_gene': 'HES2', 'score': 550.77}, {'connected_gene': 'PHF13', 'score': 14.15}, {'connected_gene': 'NOL9', 'score': 11.85}, {'connected_gene': 'RNF207', 'score': 10.7}, {'connected_gene': 'LOC102724450', 'score': 10.7}, {'connected_gene': 'RPL22', 'score': 10.7}, {'connected_gene': 'THAP3', 'score': 10.37}, {'connected_gene': 'ACOT7', 'score': 6.48}, {'connected_gene': 'GC01M006398', 'score': 0.34}]
chr1	GH01I006275	6275547	6277685	1.35	[{'connected_gene': 'ESPN', 'score': 12.58}, {'connected_gene': 'RNF207', 'score': 11.04}, {'connected_gene': 'GPR153', 'score': 2.04}, {'connected_gene': 'ZBTB48', 'score': 1.93}, {'connected_gene': 'PHF13', 'score': 1.38}, {'connected_gene': 'ACOT7', 'score': 1.28}, {'connected_gene': 'GC01P006262', 'score': 0.37}, {'connected_gene': 'ENSG00000271746', 'score': 0.13}]
chr1	GH01I006327	6327963	6332120	0.86	[{'connected_gene': 'ESPN', 'score': 19.71}, {'connected_gene': 'RNF207', 'score': 9.55}, {'connected_gene': 'GPR153', 'score': 5.94}, {'connected_gene': 'ACOT7', 'score': 5.67}, {'connected_gene': 'ENSG00000271746', 'score': 0.21}, {'connected_gene': 'GC01P006262', 'score': 0.2}]
chr1	GH01I006412	6412832	6417164	1.12	[{'connected_gene': 'ESPN', 'score': 26.49}, {'connected_gene': 'RNF207', 'score': 19.47}, {'connected_gene': 'LINC00337', 'score': 11.71}, {'connected_gene': 'ICMT', 'score': 11.71}, {'connected_gene': 'HES3', 'score': 11.71}, {'connected_gene': 'PLEKHG5', 'score': 11.13}, {'connected_gene': 'LOC102724450', 'score': 10.81}, {'connected_gene': 'RPL22', 'score': 10.81}, {'connected_gene': 'CAMTA1', 'score': 10.81}, {'connected_gene': 'CHD5', 'score': 10.31}, {'connected_gene': 'ACOT7', 'score': 5.7}, {'connected_gene': 'HES2', 'score': 0.44}, {'connected_gene': 'GC01M006398', 'score': 0.37}]
chr1	GH01I006208	6208607	6209838	1.34	[{'connected_gene': 'RPL22', 'score': 550.77}, {'connected_gene': 'RNF207', 'score': 12.8}, {'connected_gene': 'ICMT', 'score': 9.23}, {'connected_gene': 'LOC102724450', 'score': 0.77}]
chr1	GH01I006500	6500818	6502873	1.12	[{'connected_gene': 'PLEKHG5', 'score': 5.13}, {'connected_gene': 'RNF207', 'score': 4.43}, {'connected_gene': 'TNFRSF25', 'score': 0.28}]
chr1	GH01I006418	6418498	6421697	1.46	[{'connected_gene': 'HES2', 'score': 550.77}, {'connected_gene': 'ESPN', 'score': 25.65}, {'connected_gene': 'RNF207', 'score': 10.73}, {'connected_gene': 'LOC102724450', 'score': 10.73}, {'connected_gene': 'RPL22', 'score': 10.73}, {'connected_gene': 'ACOT7', 'score': 6.18}, {'connected_gene': 'GC01M006398', 'score': 0.34}]
chr1	GH01I006204	6204261	6207175	2.27	[{'connected_gene': 'RNF207', 'score': 568.55}, {'connected_gene': 'LOC102724450', 'score': 550.77}, {'connected_gene': 'THAP3', 'score': 28.89}, {'connected_gene': 'PHF13', 'score': 14.11}, {'connected_gene': 'ZBTB48', 'score': 13.02}, {'connected_gene': 'RPL22', 'score': 12.2}, {'connected_gene': 'NOL9', 'score': 11.78}]
chr1	GH01I006008	6008965	6010473	0.86	[{'connected_gene': 'RNF207', 'score': 9.81}, {'connected_gene': 'LOC102724450', 'score': 9.81}, {'connected_gene': 'RPL22', 'score': 9.81}, {'connected_gene': 'KCNAB2', 'score': 8.98}, {'connected_gene': 'NPHP4', 'score': 0.37}, {'connected_gene': 'GC01M006038', 'score': 0.31}]
chr1	GH01I006156	6156654	6158681	1.1	[{'connected_gene': 'RNF207', 'score': 11.24}, {'connected_gene': 'LOC102724450', 'score': 11.24}, {'connected_gene': 'RPL22', 'score': 11.23}, {'connected_gene': 'CHD5', 'score': 0.34}, {'connected_gene': 'LOC105376687', 'score': 0.31}]
chr1	GH01I006007	6007201	6007400	0.97	[{'connected_gene': 'RNF207', 'score': 9.81}, {'connected_gene': 'LOC102724450', 'score': 9.81}, {'connected_gene': 'RPL22', 'score': 9.81}, {'connected_gene': 'NPHP4', 'score': 0.39}, {'connected_gene': 'KCNAB2', 'score': 0.37}, {'connected_gene': 'GC01M006038', 'score': 0.29}]
chr1	GH01I006147	6147992	6149500	1.03	[{'connected_gene': 'RNF207', 'score': 11.22}, {'connected_gene': 'LOC102724450', 'score': 11.22}, {'connected_gene': 'RPL22', 'score': 11.2}, {'connected_gene': 'LOC105376687', 'score': 0.37}, {'connected_gene': 'CHD5', 'score': 0.29}]
chr1	GH01I006259	6259681	6264315	2.35	[{'connected_gene': 'GPR153', 'score': 572.89}, {'connected_gene': 'GC01P006262', 'score': 550.77}, {'connected_gene': 'ICMT', 'score': 18.67}, {'connected_gene': 'LINC00337', 'score': 12.7}, {'connected_gene': 'RPL22', 'score': 10.53}, {'connected_gene': 'RNF207', 'score': 10.52}, {'connected_gene': 'LOC102724450', 'score': 10.52}, {'connected_gene': 'CHD5', 'score': 10.52}, {'connected_gene': 'NOL9', 'score': 10.26}, {'connected_gene': 'THAP3', 'score': 1.99}, {'connected_gene': 'ACOT7', 'score': 0.12}, {'connected_gene': 'ENSG00000271746', 'score': 0.12}]
chr1	GH01I006218	6218986	6221891	0.92	[{'connected_gene': 'ICMT', 'score': 20.17}, {'connected_gene': 'HES3', 'score': 12.22}, {'connected_gene': 'CHD5', 'score': 10.97}, {'connected_gene': 'LINC00337', 'score': 9.89}, {'connected_gene': 'RNF207', 'score': 0.39}, {'connected_gene': 'RPL22', 'score': 0.39}]
chr1	GH01I006233	6233275	6236706	2.02	[{'connected_gene': 'ICMT', 'score': 568.99}, {'connected_gene': 'LINC00337', 'score': 562.66}, {'connected_gene': 'ZBTB48', 'score': 21.74}, {'connected_gene': 'RPL22', 'score': 11.28}, {'connected_gene': 'THAP3', 'score': 11.15}, {'connected_gene': 'NOL9', 'score': 10.08}, {'connected_gene': 'GPR153', 'score': 7.82}, {'connected_gene': 'RNF207', 'score': 5.4}]
chr1	GH01I006446	6445823	6452168	1.31	[{'connected_gene': 'ENSG00000231868', 'score': 550.77}, {'connected_gene': 'ESPN', 'score': 19.14}, {'connected_gene': 'PLEKHG5', 'score': 11.7}, {'connected_gene': 'RNF207', 'score': 10.57}, {'connected_gene': 'LOC102724450', 'score': 10.57}, {'connected_gene': 'RPL22', 'score': 10.57}, {'connected_gene': 'ACOT7', 'score': 7.62}, {'connected_gene': 'TNFRSF25', 'score': 0.37}]
chr1	GH01I006197	6197742	6200945	2.09	[{'connected_gene': 'GC01M006194', 'score': 550.77}, {'connected_gene': 'RPL22', 'score': 550.39}, {'connected_gene': 'PHF13', 'score': 31.47}, {'connected_gene': 'RNF207', 'score': 13.01}, {'connected_gene': 'NOL9', 'score': 11.79}, {'connected_gene': 'ZBTB48', 'score': 11.16}, {'connected_gene': 'THAP3', 'score': 10.33}]