PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000444870	[[3689351, 3689405], [3689626, 3689745], [3691862, 3692047], [3692358, 3692546]]	[[3691937, 3692047], [3692358, 3692485]]
ENST00000452264	[[3689388, 3689745], [3691862, 3691952]]	[[3691937, 3691952]]
ENST00000561886	[[3689626, 3689745], [3691862, 3692234]]	[[3691937, 3692051]]
NM_001288583	[[3689324, 3689352], [3689626, 3689745], [3691862, 3692047], [3692358, 3692546]]	[[3691937, 3692047], [3692358, 3692485]]
NM_001163724	[[3689350, 3689405], [3689626, 3689745], [3691862, 3692047], [3692358, 3692546]]	[[3691937, 3692047], [3692358, 3692485]]

Promoter

Chrom	Start	End	Description
chr1	3689211	3689226	CAGE_peak_1_at_LOC388588_5end
chr1	3689307	3689321	CAGE_peak_3_at_LOC388588_5end
chr1	3689325	3689369	CAGE_peak_2_at_LOC388588_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I003843	3843001	3843400	0.31	[{'connected_gene': 'CEP104', 'score': 37.77}, {'connected_gene': 'SMIM1', 'score': 7.12}, {'connected_gene': 'DFFB', 'score': 0.39}, {'connected_gene': 'LRRC47', 'score': 0.25}]
chr1	GH01I003856	3856200	3858381	2.04	[{'connected_gene': 'CEP104', 'score': 588.86}, {'connected_gene': 'DFFB', 'score': 550.77}, {'connected_gene': 'C1orf174', 'score': 19.76}, {'connected_gene': 'WRAP73', 'score': 16.0}, {'connected_gene': 'SMIM1', 'score': 15.68}, {'connected_gene': 'ENSG00000272153', 'score': 14.12}]
chr1	GH01I003795	3795086	3797526	2.07	[{'connected_gene': 'LRRC47', 'score': 555.24}, {'connected_gene': 'PIR46973', 'score': 550.77}, {'connected_gene': 'C1orf174', 'score': 19.65}, {'connected_gene': 'CEP104', 'score': 18.92}, {'connected_gene': 'SMIM1', 'score': 18.42}, {'connected_gene': 'WRAP73', 'score': 16.03}, {'connected_gene': 'ENSG00000272153', 'score': 14.32}]
chr1	GH01I003792	3792714	3794515	0.8	[{'connected_gene': 'SMIM1', 'score': 18.47}, {'connected_gene': 'CEP104', 'score': 18.34}, {'connected_gene': 'LRRC47', 'score': 11.41}, {'connected_gene': 'PIR46973', 'score': 0.77}, {'connected_gene': 'ENSG00000272153', 'score': 0.44}]
chr1	GH01I003787	3787131	3788511	0.69	[{'connected_gene': 'SMIM1', 'score': 21.74}, {'connected_gene': 'CEP104', 'score': 21.38}, {'connected_gene': 'ENSG00000272153', 'score': 0.77}, {'connected_gene': 'PIR46973', 'score': 0.44}, {'connected_gene': 'LRRC47', 'score': 0.44}]
chr1	GH01I003771	3771634	3776875	2.27	[{'connected_gene': 'SMIM1', 'score': 581.69}, {'connected_gene': 'CEP104', 'score': 28.38}, {'connected_gene': 'C1orf174', 'score': 16.45}, {'connected_gene': 'WRAP73', 'score': 13.59}, {'connected_gene': 'ENSG00000272153', 'score': 11.94}, {'connected_gene': 'TP73-AS1', 'score': 10.26}, {'connected_gene': 'LRRC47', 'score': 6.28}, {'connected_gene': 'GC01P003777', 'score': 0.77}, {'connected_gene': 'CCDC27', 'score': 0.31}]
chr1	GH01I003811	3811361	3811800	0.69	[{'connected_gene': 'SMIM1', 'score': 18.19}, {'connected_gene': 'LRRC47', 'score': 0.37}, {'connected_gene': 'DFFB', 'score': 0.25}]
chr1	GH01I003868	3868992	3870503	0.79	[{'connected_gene': 'DFFB', 'score': 12.27}, {'connected_gene': 'C1orf174', 'score': 9.62}, {'connected_gene': 'SMIM1', 'score': 5.9}, {'connected_gene': 'CEP104', 'score': 0.39}, {'connected_gene': 'PIR62209', 'score': 0.34}]
chr1	GH01I003752	3752401	3752460	0.5	[{'connected_gene': 'CCDC27', 'score': 550.44}, {'connected_gene': 'GC01P003748', 'score': 0.77}, {'connected_gene': 'SMIM1', 'score': 0.34}]
chr1	GH01I003776	3776937	3777061	0.31	[{'connected_gene': 'GC01P003777', 'score': 550.77}, {'connected_gene': 'CEP104', 'score': 9.52}, {'connected_gene': 'SMIM1', 'score': 0.77}]
chr1	GH01I003778	3778202	3778316	0.43	[{'connected_gene': 'GC01P003777', 'score': 550.77}, {'connected_gene': 'SMIM1', 'score': 25.74}, {'connected_gene': 'C1orf174', 'score': 11.12}, {'connected_gene': 'WRAP73', 'score': 10.34}, {'connected_gene': 'MEGF6', 'score': 10.27}, {'connected_gene': 'CEP104', 'score': 8.82}, {'connected_gene': 'RN7SL574P', 'score': 0.77}]