PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000394806	[[46830518, 46836982], [46858297, 46858394], [46864995, 46865074]]	[[46836863, 46836982], [46858297, 46858394], [46864995, 46865061]]
ENST00000285697	[[46836005, 46836982], [46843514, 46843697], [46858297, 46858394], [46864995, 46865323]]	[[46836863, 46836982], [46843514, 46843697], [46858297, 46858394], [46864995, 46865061]]
ENST00000565112	[[46836629, 46836982], [46841880, 46842046], [46843514, 46843697], [46858297, 46858394], [46864900, 46864980]]	[[46841921, 46842046], [46843514, 46843697], [46858297, 46858394], [46864900, 46864980]]
ENST00000564250	[[46836914, 46836982], [46843514, 46843697], [46858297, 46858394], [46864546, 46864671]]	None
NM_001001436	[[46835958, 46836982], [46843514, 46843697], [46858297, 46858394], [46864995, 46865074]]	[[46836863, 46836982], [46843514, 46843697], [46858297, 46858394], [46864995, 46865061]]

Promoter

Chrom	Start	End	Description
chr16	46865047	46865103	CAGE_peak_1_at_C16orf87_5end
chr16	46865127	46865138	CAGE_peak_4_at_C16orf87_5end
chr16	46865155	46865175	CAGE_peak_3_at_C16orf87_5end
chr16	46865190	46865197	CAGE_peak_7_at_C16orf87_5end
chr16	46865286	46865347	CAGE_peak_2_at_C16orf87_5end
chr16	46865368	46865388	CAGE_peak_5_at_C16orf87_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I046836	46836801	46837400	0.46	[{'connected_gene': 'GPT2', 'score': 11.47}, {'connected_gene': 'ORC6', 'score': 11.11}, {'connected_gene': 'VPS35', 'score': 11.11}, {'connected_gene': 'MYLK3', 'score': 10.6}, {'connected_gene': 'C16orf87', 'score': 0.44}, {'connected_gene': 'CKBP1', 'score': 0.44}]
chr16	GH16I046727	46727729	46734556	0.38	[{'connected_gene': 'SHCBP1', 'score': 12.95}, {'connected_gene': 'MYLK3', 'score': 12.1}, {'connected_gene': 'ORC6', 'score': 11.54}, {'connected_gene': 'VPS35', 'score': 11.54}, {'connected_gene': 'ANKRD26P1', 'score': 5.55}, {'connected_gene': 'C16orf87', 'score': 4.23}, {'connected_gene': 'GC16P046705', 'score': 0.31}, {'connected_gene': 'GC16M046768', 'score': 0.26}]
chr16	GH16I046756	46756546	46758278	1.16	[{'connected_gene': 'SHCBP1', 'score': 14.0}, {'connected_gene': 'C16orf87', 'score': 6.53}, {'connected_gene': 'ORC6', 'score': 3.09}, {'connected_gene': 'GC16M046768', 'score': 0.37}, {'connected_gene': 'MYLK3', 'score': 0.29}, {'connected_gene': 'GC16P046705', 'score': 0.23}]
chr16	GH16I046821	46821221	46823450	0.67	[{'connected_gene': 'SHCBP1', 'score': 14.66}, {'connected_gene': 'C16orf87', 'score': 0.44}, {'connected_gene': 'GC16P046804', 'score': 0.37}]
chr16	GH16I046828	46828768	46832167	2.03	[{'connected_gene': 'C16orf87', 'score': 550.77}, {'connected_gene': 'SHCBP1', 'score': 14.44}, {'connected_gene': 'GC16P046804', 'score': 0.31}]
chr16	GH16I046832	46832869	46833018	0.71	[{'connected_gene': 'C16orf87', 'score': 550.77}, {'connected_gene': 'ORC6', 'score': 11.11}, {'connected_gene': 'VPS35', 'score': 11.11}, {'connected_gene': 'GPT2', 'score': 11.06}, {'connected_gene': 'CKBP1', 'score': 0.39}]
chr16	GH16I046826	46826587	46827033	0.52	[{'connected_gene': 'C16orf87', 'score': 0.77}, {'connected_gene': 'GC16P046804', 'score': 0.34}]
chr16	GH16I046829	46828001	46828200	0.38	[{'connected_gene': 'C16orf87', 'score': 0.77}, {'connected_gene': 'GC16P046804', 'score': 0.34}]
chr16	GH16I046809	46809601	46810200	0.38	[{'connected_gene': 'ORC6', 'score': 11.03}, {'connected_gene': 'VPS35', 'score': 11.03}, {'connected_gene': 'GPT2', 'score': 10.27}, {'connected_gene': 'GC16P046804', 'score': 0.44}, {'connected_gene': 'C16orf87', 'score': 0.34}]
chr16	GH16I046843	46843923	46845162	0.38	[{'connected_gene': 'CKBP1', 'score': 550.77}, {'connected_gene': 'GPT2', 'score': 12.1}, {'connected_gene': 'ORC6', 'score': 11.23}, {'connected_gene': 'VPS35', 'score': 11.23}, {'connected_gene': 'MYLK3', 'score': 10.91}, {'connected_gene': 'C16orf87', 'score': 0.39}]