PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377893	[[6307405, 6310063], [6310499, 6310684], [6311397, 6311590], [6313777, 6314207], [6314609, 6315074], [6320884, 6321035]]	[[6309397, 6310063], [6310499, 6310684], [6311397, 6311590], [6313777, 6314207], [6314609, 6314965]]
NM_207370	[[6307405, 6310063], [6310499, 6310684], [6311397, 6311590], [6313777, 6314207], [6314609, 6315074], [6320884, 6321035]]	[[6309397, 6310063], [6310499, 6310684], [6311397, 6311590], [6313777, 6314207], [6314609, 6314965]]

Promoter

Chrom	Start	End	Description
chr1	6321055	6321069	CAGE_peak_2_at_GPR153_5end
chr1	6321111	6321174	CAGE_peak_1_at_GPR153_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I006293	6293628	6295795	0.99	[{'connected_gene': 'ESPN', 'score': 17.97}, {'connected_gene': 'THAP3', 'score': 14.88}, {'connected_gene': 'NOL9', 'score': 12.33}, {'connected_gene': 'LINC00337', 'score': 11.71}, {'connected_gene': 'ICMT', 'score': 11.71}, {'connected_gene': 'NPHP4', 'score': 9.9}, {'connected_gene': 'ZBTB48', 'score': 3.67}, {'connected_gene': 'GPR153', 'score': 2.23}, {'connected_gene': 'ACOT7', 'score': 1.52}, {'connected_gene': 'GC01P006262', 'score': 0.29}, {'connected_gene': 'ENSG00000271746', 'score': 0.15}]
chr1	GH01I006315	6315941	6317745	0.95	[{'connected_gene': 'ESPN', 'score': 15.32}, {'connected_gene': 'CHD5', 'score': 10.53}, {'connected_gene': 'GPR153', 'score': 6.34}, {'connected_gene': 'GC01P006262', 'score': 0.22}, {'connected_gene': 'ENSG00000271746', 'score': 0.18}, {'connected_gene': 'ACOT7', 'score': 0.18}]
chr1	GH01I006275	6275547	6277685	1.35	[{'connected_gene': 'ESPN', 'score': 12.58}, {'connected_gene': 'RNF207', 'score': 11.04}, {'connected_gene': 'GPR153', 'score': 2.04}, {'connected_gene': 'ZBTB48', 'score': 1.93}, {'connected_gene': 'PHF13', 'score': 1.38}, {'connected_gene': 'ACOT7', 'score': 1.28}, {'connected_gene': 'GC01P006262', 'score': 0.37}, {'connected_gene': 'ENSG00000271746', 'score': 0.13}]
chr1	GH01I006327	6327963	6332120	0.86	[{'connected_gene': 'ESPN', 'score': 19.71}, {'connected_gene': 'RNF207', 'score': 9.55}, {'connected_gene': 'GPR153', 'score': 5.94}, {'connected_gene': 'ACOT7', 'score': 5.67}, {'connected_gene': 'ENSG00000271746', 'score': 0.21}, {'connected_gene': 'GC01P006262', 'score': 0.2}]
chr1	GH01I006320	6320534	6321429	0.31	[{'connected_gene': 'ESPN', 'score': 19.05}, {'connected_gene': 'GPR153', 'score': 6.11}, {'connected_gene': 'ACOT7', 'score': 5.65}, {'connected_gene': 'GC01P006262', 'score': 0.22}, {'connected_gene': 'ENSG00000271746', 'score': 0.19}]
chr1	GH01I006313	6313463	6313839	0.54	[{'connected_gene': 'ESPN', 'score': 20.08}, {'connected_gene': 'ZBTB48', 'score': 3.5}, {'connected_gene': 'ACOT7', 'score': 2.11}, {'connected_gene': 'GPR153', 'score': 1.7}, {'connected_gene': 'GC01P006262', 'score': 0.23}, {'connected_gene': 'ENSG00000271746', 'score': 0.18}]
chr1	GH01I006299	6299190	6303682	1.07	[{'connected_gene': 'ESPN', 'score': 18.97}, {'connected_gene': 'ACOT7', 'score': 5.85}, {'connected_gene': 'ZBTB48', 'score': 3.34}, {'connected_gene': 'PLEKHG5', 'score': 2.75}, {'connected_gene': 'GPR153', 'score': 2.15}, {'connected_gene': 'HES2', 'score': 2.06}, {'connected_gene': 'THAP3', 'score': 1.97}, {'connected_gene': 'NPHP4', 'score': 1.56}, {'connected_gene': 'GC01P006262', 'score': 0.26}, {'connected_gene': 'ENSG00000271746', 'score': 0.16}]
chr1	GH01I006290	6290072	6292388	1.2	[{'connected_gene': 'ESPN', 'score': 13.81}, {'connected_gene': 'ACOT7', 'score': 6.98}, {'connected_gene': 'ZBTB48', 'score': 4.03}, {'connected_gene': 'GPR153', 'score': 1.91}, {'connected_gene': 'GC01P006262', 'score': 0.31}, {'connected_gene': 'ENSG00000271746', 'score': 0.15}]
chr1	GH01I006244	6244780	6246696	1.75	[{'connected_gene': 'HES3', 'score': 550.77}, {'connected_gene': 'GPR153', 'score': 14.98}]
chr1	GH01I006245	6244501	6244650	0.51	[{'connected_gene': 'HES3', 'score': 550.77}, {'connected_gene': 'GPR153', 'score': 0.37}]
chr1	GH01I006260	6259429	6259488	0.81	[{'connected_gene': 'GPR153', 'score': 550.77}, {'connected_gene': 'GC01P006262', 'score': 550.77}, {'connected_gene': 'HES3', 'score': 0.37}]
chr1	GH01I006256	6256761	6256910	0.46	[{'connected_gene': 'GPR153', 'score': 20.43}, {'connected_gene': 'HES3', 'score': 0.39}]
chr1	GH01I006257	6257661	6257810	0.2	[{'connected_gene': 'GPR153', 'score': 21.4}, {'connected_gene': 'HES3', 'score': 0.39}]
chr1	GH01I006259	6259681	6264315	2.35	[{'connected_gene': 'GPR153', 'score': 572.89}, {'connected_gene': 'GC01P006262', 'score': 550.77}, {'connected_gene': 'ICMT', 'score': 18.67}, {'connected_gene': 'LINC00337', 'score': 12.7}, {'connected_gene': 'RPL22', 'score': 10.53}, {'connected_gene': 'RNF207', 'score': 10.52}, {'connected_gene': 'LOC102724450', 'score': 10.52}, {'connected_gene': 'CHD5', 'score': 10.52}, {'connected_gene': 'NOL9', 'score': 10.26}, {'connected_gene': 'THAP3', 'score': 1.99}, {'connected_gene': 'ACOT7', 'score': 0.12}, {'connected_gene': 'ENSG00000271746', 'score': 0.12}]
chr1	GH01I006238	6238037	6242725	1.24	[{'connected_gene': 'GPR153', 'score': 11.29}, {'connected_gene': 'LINC00337', 'score': 10.36}, {'connected_gene': 'ICMT', 'score': 5.27}, {'connected_gene': 'HES3', 'score': 0.77}]
chr1	GH01I006326	6325949	6326285	0.31	[{'connected_gene': 'GPR153', 'score': 6.05}, {'connected_gene': 'GC01P006262', 'score': 0.21}, {'connected_gene': 'ENSG00000271746', 'score': 0.2}, {'connected_gene': 'ACOT7', 'score': 0.2}]
chr1	GH01I006247	6246781	6246990	1.06	[{'connected_gene': 'ICMT', 'score': 7.13}, {'connected_gene': 'HES3', 'score': 0.77}, {'connected_gene': 'GPR153', 'score': 0.39}]
chr1	GH01I006233	6233275	6236706	2.02	[{'connected_gene': 'ICMT', 'score': 568.99}, {'connected_gene': 'LINC00337', 'score': 562.66}, {'connected_gene': 'ZBTB48', 'score': 21.74}, {'connected_gene': 'RPL22', 'score': 11.28}, {'connected_gene': 'THAP3', 'score': 11.15}, {'connected_gene': 'NOL9', 'score': 10.08}, {'connected_gene': 'GPR153', 'score': 7.82}, {'connected_gene': 'RNF207', 'score': 5.4}]
chr1	GH01I006281	6281147	6283232	1.15	[{'connected_gene': 'ACOT7', 'score': 1.97}, {'connected_gene': 'GPR153', 'score': 1.75}, {'connected_gene': 'GC01P006262', 'score': 0.34}, {'connected_gene': 'ENSG00000271746', 'score': 0.14}]