PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000403915	[[18059113, 18059313], [18098946, 18099138], [18112216, 18114221]]	[[18112275, 18113751]]
ENST00000481414	[[18059933, 18060073], [18098946, 18099138], [18100674, 18100902]]	None
ENST00000304101	[[18059944, 18060073], [18098946, 18099138], [18112216, 18114228]]	[[18112275, 18113751]]
ENST00000465292	[[18059960, 18060073], [18098946, 18099138], [18351655, 18351774], [18499915, 18500026], [18542832, 18542882]]	None
ENST00000419802	[[18060649, 18060728], [18098946, 18099138], [18112216, 18112498]]	[[18112275, 18112498]]
NM_001282428	[[18059113, 18059313], [18098946, 18099138], [18112216, 18114225]]	[[18112275, 18113751]]
NM_002252	[[18059923, 18060073], [18098946, 18099138], [18112216, 18114225]]	[[18112275, 18113751]]

Promoter

Chrom	Start	End	Description
chr2	18059906	18059945	CAGE_peak_1_at_KCNS3_5end
chr2	18059947	18059968	CAGE_peak_2_at_KCNS3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I017877	17877798	17877857	0.76	[{'connected_gene': 'KCNS3', 'score': 550.77}, {'connected_gene': 'ZPAXP', 'score': 0.31}]
chr2	GH02I017934	17934227	17935543	0.43	[{'connected_gene': 'KCNS3', 'score': 10.78}, {'connected_gene': 'ENSG00000260331', 'score': 10.44}, {'connected_gene': 'GC02P017933', 'score': 0.77}, {'connected_gene': 'GC02M017915', 'score': 0.29}]
chr2	GH02I018153	18153916	18155024	0.56	[{'connected_gene': 'KCNS3', 'score': 5.98}, {'connected_gene': 'GC02P018107', 'score': 0.25}, {'connected_gene': 'GC02P018305', 'score': 0.1}]
chr2	GH02I017892	17892708	17893624	0.59	[{'connected_gene': 'KCNS3', 'score': 29.07}, {'connected_gene': 'ENSG00000260331', 'score': 4.32}, {'connected_gene': 'GC02P017933', 'score': 0.28}]
chr2	GH02I018119	18119763	18120432	0.51	[{'connected_gene': 'KCNS3', 'score': 5.54}, {'connected_gene': 'GC02P018107', 'score': 0.39}, {'connected_gene': 'GC02P018305', 'score': 0.09}]
chr2	GH02I018076	18076894	18078379	0.2	[{'connected_gene': 'KCNS3', 'score': 7.26}, {'connected_gene': 'GC02P018107', 'score': 0.31}, {'connected_gene': 'GC02M018040', 'score': 0.28}, {'connected_gene': 'ENSG00000212455', 'score': 0.28}]
chr2	GH02I017878	17878200	17880340	1.85	[{'connected_gene': 'KCNS3', 'score': 589.7}, {'connected_gene': 'GC02P017933', 'score': 0.23}]
chr2	GH02I018065	18065775	18065924	0.31	[{'connected_gene': 'GEN1', 'score': 4.99}, {'connected_gene': 'GC02M018040', 'score': 0.31}, {'connected_gene': 'ENSG00000212455', 'score': 0.31}, {'connected_gene': 'GC02P018107', 'score': 0.26}, {'connected_gene': 'KCNS3', 'score': 0.09}]
chr2	GH02I018046	18046626	18049092	0.88	[{'connected_gene': 'GEN1', 'score': 4.85}, {'connected_gene': 'MSGN1', 'score': 2.37}, {'connected_gene': 'GC02M018040', 'score': 0.44}, {'connected_gene': 'ENSG00000212455', 'score': 0.44}, {'connected_gene': 'GC02P018107', 'score': 0.22}, {'connected_gene': 'KCNS3', 'score': 0.09}]
chr2	GH02I017884	17884888	17884952	0.22	[{'connected_gene': 'MSGN1', 'score': 2.74}, {'connected_gene': 'KCNS3', 'score': 0.44}, {'connected_gene': 'GC02P017933', 'score': 0.25}]
chr2	GH02I018180	18180871	18181228	0.22	[{'connected_gene': 'MSGN1', 'score': 2.36}, {'connected_gene': 'GC02P018107', 'score': 0.19}, {'connected_gene': 'GC02P018305', 'score': 0.13}, {'connected_gene': 'KCNS3', 'score': 0.06}]
chr2	GH02I018311	18311015	18311984	0.69	[{'connected_gene': 'LOC105373451', 'score': 550.77}, {'connected_gene': 'GC02M018309', 'score': 0.77}, {'connected_gene': 'GC02P018305', 'score': 0.44}, {'connected_gene': 'KCNS3', 'score': 0.04}]
chr2	GH02I018066	18066155	18066304	0.31	[{'connected_gene': 'GC02M018040', 'score': 0.31}, {'connected_gene': 'ENSG00000212455', 'score': 0.31}, {'connected_gene': 'GC02P018107', 'score': 0.26}, {'connected_gene': 'KCNS3', 'score': 0.09}]
chr2	GH02I018209	18209833	18210861	0.67	[{'connected_gene': 'GC02P018305', 'score': 0.15}, {'connected_gene': 'GC02P018107', 'score': 0.15}, {'connected_gene': 'KCNS3', 'score': 0.06}]
chr2	GH02I018197	18197422	18197741	0.22	[{'connected_gene': 'GC02P018107', 'score': 0.16}, {'connected_gene': 'GC02P018305', 'score': 0.14}, {'connected_gene': 'KCNS3', 'score': 0.06}]
chr2	GH02I017976	17976346	17978394	0.58	[{'connected_gene': 'GC02M017915', 'score': 0.39}, {'connected_gene': 'GC02M018040', 'score': 0.21}, {'connected_gene': 'ENSG00000212455', 'score': 0.21}, {'connected_gene': 'KCNS3', 'score': 0.15}]
chr2	GH02I017979	17979386	17980339	0.2	[{'connected_gene': 'GC02M017915', 'score': 0.39}, {'connected_gene': 'GC02M018040', 'score': 0.21}, {'connected_gene': 'ENSG00000212455', 'score': 0.21}, {'connected_gene': 'KCNS3', 'score': 0.15}]
chr2	GH02I018068	18068015	18068280	0.26	[{'connected_gene': 'GC02M018040', 'score': 0.31}, {'connected_gene': 'ENSG00000212455', 'score': 0.31}, {'connected_gene': 'GC02P018107', 'score': 0.28}, {'connected_gene': 'KCNS3', 'score': 0.08}]
chr2	GH02I018298	18298911	18301703	1.15	[{'connected_gene': 'GC02P018305', 'score': 0.44}, {'connected_gene': 'LOC105373451', 'score': 0.39}, {'connected_gene': 'GC02P018107', 'score': 0.08}, {'connected_gene': 'KCNS3', 'score': 0.05}]