PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366621	[[233749749, 233750272], [233802340, 233802736], [233807016, 233808258]]	[[233749917, 233750272], [233802340, 233802736], [233807016, 233807276]]
ENST00000472190	[[233765303, 233765660], [233802340, 233802736], [233807016, 233807445]]	None
ENST00000366620	[[233765352, 233765660], [233766253, 233766549], [233767000, 233767033], [233802340, 233802736], [233807016, 233807984]]	[[233767026, 233767033], [233802340, 233802736], [233807016, 233807276]]
ENST00000487728	[[233772269, 233772327], [233773033, 233773180], [233802340, 233802736]]	None
ENST00000446915	[[233785686, 233785795], [233802340, 233802736], [233807016, 233807237]]	[[233785686, 233785795], [233802340, 233802736], [233807016, 233807237]]
ENST00000472869	[[233791440, 233791547], [233796219, 233796412], [233797601, 233797682], [233802340, 233802432]]	None
NM_002245	[[233749749, 233750272], [233802340, 233802736], [233807016, 233808258]]	[[233749917, 233750272], [233802340, 233802736], [233807016, 233807276]]

Promoter

Chrom	Start	End	Description
chr1	233749309	233749322	CAGE_peak_10_at_KCNK1_5end
chr1	233749347	233749411	CAGE_peak_2_at_KCNK1_5end
chr1	233749454	233749466	CAGE_peak_16_at_KCNK1_5end
chr1	233749556	233749570	CAGE_peak_6_at_KCNK1_5end
chr1	233749586	233749602	CAGE_peak_9_at_KCNK1_5end
chr1	233749712	233749731	CAGE_peak_3_at_KCNK1_5end
chr1	233749739	233749761	CAGE_peak_4_at_KCNK1_5end
chr1	233749836	233749859	CAGE_peak_5_at_KCNK1_5end
chr1	233749872	233749930	CAGE_peak_1_at_KCNK1_5end
chr1	233750113	233750125	CAGE_peak_8_at_KCNK1_5end
chr1	233750141	233750152	CAGE_peak_11_at_KCNK1_5end
chr1	233765375	233765391	CAGE_peak_14_at_KCNK1_5end
chr1	233765401	233765415	CAGE_peak_12_at_KCNK1_5end
chr1	233765422	233765439	CAGE_peak_13_at_KCNK1_5end
chr1	233765566	233765580	CAGE_peak_20_at_KCNK1_5end
chr1	233791439	233791444	CAGE_peak_7_at_KCNK1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I233635	233635291	233636916	1.1	[{'connected_gene': 'RPS7P3', 'score': 60.21}, {'connected_gene': 'IRF2BP2', 'score': 42.87}, {'connected_gene': 'KCNK1', 'score': 18.9}, {'connected_gene': 'LOC101927765', 'score': 11.07}, {'connected_gene': 'NTPCR', 'score': 9.85}, {'connected_gene': 'MIR4427', 'score': 0.39}, {'connected_gene': 'GC01P233696', 'score': 0.22}]
chr1	GH01I233665	233665791	233666504	1.2	[{'connected_gene': 'RPS7P3', 'score': 11.23}, {'connected_gene': 'IRF2BP2', 'score': 11.09}, {'connected_gene': 'KCNK1', 'score': 6.23}, {'connected_gene': 'GC01P233696', 'score': 0.31}, {'connected_gene': 'MIR4427', 'score': 0.26}]
chr1	GH01I233667	233667932	233669795	1.17	[{'connected_gene': 'KCNK1', 'score': 28.83}, {'connected_gene': 'TARBP1', 'score': 10.73}, {'connected_gene': 'GC01P233696', 'score': 0.31}, {'connected_gene': 'MIR4427', 'score': 0.26}]
chr1	GH01I233720	233720978	233721330	0.78	[{'connected_gene': 'KCNK1', 'score': 24.13}, {'connected_gene': 'TARBP1', 'score': 10.73}, {'connected_gene': 'GC01P233727', 'score': 0.44}, {'connected_gene': 'GC01M233697', 'score': 0.34}]
chr1	GH01I233613	233613182	233616424	2.67	[{'connected_gene': 'KCNK1', 'score': 558.65}, {'connected_gene': 'IRF2BP2', 'score': 16.5}, {'connected_gene': 'PCNX2', 'score': 12.82}, {'connected_gene': 'RPS7P3', 'score': 10.71}, {'connected_gene': 'MIR4427', 'score': 0.44}]
chr1	GH01I233627	233627561	233627629	0.39	[{'connected_gene': 'KCNK1', 'score': 8.33}, {'connected_gene': 'MIR4427', 'score': 0.77}, {'connected_gene': 'GC01P233696', 'score': 0.2}]
chr1	GH01I233670	233670690	233672056	0.46	[{'connected_gene': 'KCNK1', 'score': 6.54}, {'connected_gene': 'GC01P233696', 'score': 0.34}, {'connected_gene': 'MIR4427', 'score': 0.25}]
chr1	GH01I233638	233638444	233640273	0.54	[{'connected_gene': 'KCNK1', 'score': 16.88}, {'connected_gene': 'MIR4427', 'score': 0.37}, {'connected_gene': 'GC01P233696', 'score': 0.22}]
chr1	GH01I233646	233646460	233648389	0.43	[{'connected_gene': 'KCNK1', 'score': 17.49}, {'connected_gene': 'MIR4427', 'score': 0.34}, {'connected_gene': 'GC01P233696', 'score': 0.25}]
chr1	GH01I233660	233660765	233663255	0.38	[{'connected_gene': 'KCNK1', 'score': 17.78}, {'connected_gene': 'GC01P233696', 'score': 0.29}, {'connected_gene': 'MIR4427', 'score': 0.28}]
chr1	GH01I233649	233649600	233653728	0.43	[{'connected_gene': 'KCNK1', 'score': 17.82}, {'connected_gene': 'MIR4427', 'score': 0.31}, {'connected_gene': 'GC01P233696', 'score': 0.26}]
chr1	GH01I233672	233672675	233675162	1.33	[{'connected_gene': 'KCNK1', 'score': 16.2}, {'connected_gene': 'GC01P233696', 'score': 0.34}, {'connected_gene': 'MIR4427', 'score': 0.25}]
chr1	GH01I233654	233654479	233656924	1.06	[{'connected_gene': 'KCNK1', 'score': 25.59}, {'connected_gene': 'MIR4427', 'score': 0.29}, {'connected_gene': 'GC01P233696', 'score': 0.26}]
chr1	GH01I233616	233616747	233618074	0.43	[{'connected_gene': 'KCNK1', 'score': 0.77}, {'connected_gene': 'MIR4427', 'score': 0.44}]
chr1	GH01I233734	233734339	233737227	0.66	[{'connected_gene': 'KCNK1', 'score': 9.4}, {'connected_gene': 'GC01P233727', 'score': 0.44}, {'connected_gene': 'GC01P233751', 'score': 0.37}, {'connected_gene': 'GC01M233735', 'score': 0.31}]
chr1	GH01I233706	233706283	233708827	1.2	[{'connected_gene': 'KCNK1', 'score': 5.28}, {'connected_gene': 'GC01M233697', 'score': 0.44}, {'connected_gene': 'GC01P233696', 'score': 0.39}, {'connected_gene': 'GC01P233727', 'score': 0.37}]
chr1	GH01I233588	233588201	233588400	0.59	[{'connected_gene': 'KCNK1', 'score': 13.01}, {'connected_gene': 'GC01M233527', 'score': 0.22}]
chr1	GH01I233607	233607595	233607744	0.57	[{'connected_gene': 'KCNK1', 'score': 0.44}, {'connected_gene': 'GC01M233527', 'score': 0.19}]
chr1	GH01I233542	233542798	233544713	1.13	[{'connected_gene': 'LOC101927765', 'score': 11.07}, {'connected_gene': 'GC01M233527', 'score': 0.39}, {'connected_gene': 'KCNK1', 'score': 0.19}]
chr1	GH01I233629	233629129	233633438	0.56	[{'connected_gene': 'MIR4427', 'score': 0.44}, {'connected_gene': 'KCNK1', 'score': 0.37}, {'connected_gene': 'GC01P233696', 'score': 0.21}]
chr1	GH01I233625	233625263	233626815	0.74	[{'connected_gene': 'MIR4427', 'score': 550.77}, {'connected_gene': 'KCNK1', 'score': 0.39}, {'connected_gene': 'GC01P233696', 'score': 0.2}]