PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361484	[[70002350, 70004942]]	[[70003784, 70004618]]
NM_201550	[[70002343, 70004942]]	[[70003784, 70004618]]

Promoter

Chrom	Start	End	Description
chr12	70004523	70004545	CAGE_peak_3_at_LRRC10_5end
chr12	70004575	70004590	CAGE_peak_4_at_LRRC10_5end
chr12	70004622	70004647	CAGE_peak_2_at_LRRC10_5end
chr12	70004648	70004694	CAGE_peak_1_at_LRRC10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I069610	69610894	69610953	0.5	[{'connected_gene': 'LRRC10', 'score': 550.77}, {'connected_gene': 'CCT2', 'score': 0.31}]
chr12	GH12I069613	69613346	69613501	0.22	[{'connected_gene': 'LRRC10', 'score': 11.44}, {'connected_gene': 'LOC105369823', 'score': 0.39}]
chr12	GH12I069616	69616001	69616200	0.38	[{'connected_gene': 'LRRC10', 'score': 0.77}, {'connected_gene': 'LOC105369823', 'score': 0.44}]
chr12	GH12I069655	69655003	69658858	1.08	[{'connected_gene': 'BEST3', 'score': 30.12}, {'connected_gene': 'RAB3IP', 'score': 16.67}, {'connected_gene': 'LRRC10', 'score': 12.03}, {'connected_gene': 'LOC101928002', 'score': 11.37}, {'connected_gene': 'ENSG00000279551', 'score': 0.77}, {'connected_gene': 'LOC105369823', 'score': 0.29}]
chr12	GH12I069619	69619509	69619530	0.23	[{'connected_gene': 'CCT2', 'score': 20.04}, {'connected_gene': 'FRS2', 'score': 19.78}, {'connected_gene': 'CPSF6', 'score': 19.26}, {'connected_gene': 'YEATS4', 'score': 18.54}, {'connected_gene': 'LYZ', 'score': 10.65}, {'connected_gene': 'RAB3IP', 'score': 2.06}, {'connected_gene': 'LOC105369823', 'score': 0.77}, {'connected_gene': 'LRRC10', 'score': 0.44}]
chr12	GH12I069584	69584769	69586522	2.08	[{'connected_gene': 'CCT2', 'score': 555.47}, {'connected_gene': 'MIR3913-1', 'score': 550.77}, {'connected_gene': 'MIR3913-2', 'score': 550.77}, {'connected_gene': 'FRS2', 'score': 17.32}, {'connected_gene': 'RAP1B', 'score': 13.28}, {'connected_gene': 'NUP107', 'score': 10.24}, {'connected_gene': 'LYZ', 'score': 10.13}, {'connected_gene': 'LRRC10', 'score': 0.31}]
chr12	GH12I069624	69624161	69624310	0.97	[{'connected_gene': 'LOC105369823', 'score': 550.77}, {'connected_gene': 'LYZ', 'score': 10.34}, {'connected_gene': 'LRRC10', 'score': 0.39}]