PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000535240	[[68164813, 68164998], [68170964, 68172464]]	[[68171180, 68172464]]
ENST00000243457	[[68165675, 68165842], [68170964, 68176189]]	[[68171180, 68172464]]
NM_000891	[[68165675, 68165842], [68170964, 68176185]]	[[68171180, 68172464]]

Promoter

Chrom	Start	End	Description
chr17	68164415	68164431	CAGE_peak_3_at_KCNJ2_5end
chr17	68164752	68164760	CAGE_peak_5_at_KCNJ2_5end
chr17	68165657	68165688	CAGE_peak_1_at_KCNJ2_5end
chr17	68165689	68165700	CAGE_peak_2_at_KCNJ2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I070174	70174826	70178887	0.43	[{'connected_gene': 'KCNJ2-AS1', 'score': 6.86}, {'connected_gene': 'GC17M070172', 'score': 0.77}, {'connected_gene': 'KCNJ2', 'score': 0.44}, {'connected_gene': 'CALM2P1', 'score': 0.21}]
chr17	GH17I070136	70136618	70139200	1.32	[{'connected_gene': 'KCNJ2', 'score': 4.98}, {'connected_gene': 'KCNJ2-AS1', 'score': 4.69}, {'connected_gene': 'LOC105371881', 'score': 0.44}, {'connected_gene': 'LOC105371882', 'score': 0.34}]
chr17	GH17I070167	70167503	70171801	2.1	[{'connected_gene': 'KCNJ2', 'score': 550.77}, {'connected_gene': 'KCNJ2-AS1', 'score': 550.77}, {'connected_gene': 'GC17M070164', 'score': 550.77}, {'connected_gene': 'GC17M070172', 'score': 0.77}]
chr17	GH17I070123	70123307	70123445	0.46	[{'connected_gene': 'KCNJ2', 'score': 11.98}, {'connected_gene': 'LOC105371881', 'score': 0.44}, {'connected_gene': 'GC17P070128', 'score': 0.44}, {'connected_gene': 'GC17P070078', 'score': 0.25}, {'connected_gene': 'KCNJ16', 'score': 0.2}]
chr17	GH17I070121	70121171	70121317	0.34	[{'connected_gene': 'KCNJ2', 'score': 5.83}, {'connected_gene': 'LOC105371881', 'score': 0.44}, {'connected_gene': 'GC17P070128', 'score': 0.44}, {'connected_gene': 'GC17P070078', 'score': 0.26}, {'connected_gene': 'KCNJ16', 'score': 0.2}]
chr17	GH17I069757	69757551	69758923	1.06	[{'connected_gene': 'KCNJ2', 'score': 8.28}, {'connected_gene': 'GC17P069764', 'score': 0.44}, {'connected_gene': 'GC17M069737', 'score': 0.37}, {'connected_gene': 'LINC01483', 'score': 0.09}]
chr17	GH17I070265	70265493	70265751	0.25	[{'connected_gene': 'KCNJ2', 'score': 20.29}, {'connected_gene': 'GC17P070276', 'score': 0.39}, {'connected_gene': 'CALM2P1', 'score': 0.34}]
chr17	GH17I070266	70266441	70266723	0.3	[{'connected_gene': 'KCNJ2', 'score': 26.1}, {'connected_gene': 'GC17P070276', 'score': 0.39}, {'connected_gene': 'CALM2P1', 'score': 0.31}]
chr17	GH17I070344	70344001	70345040	0.99	[{'connected_gene': 'KCNJ2', 'score': 15.07}, {'connected_gene': 'GC17P070324', 'score': 0.37}, {'connected_gene': 'ENSG00000267109', 'score': 0.34}]
chr17	GH17I070364	70364790	70365961	1.21	[{'connected_gene': 'KCNJ2', 'score': 13.41}, {'connected_gene': 'ENSG00000267109', 'score': 0.77}, {'connected_gene': 'GC17P070324', 'score': 0.26}]
chr17	GH17I070289	70289401	70289800	0.2	[{'connected_gene': 'KCNJ2', 'score': 6.02}, {'connected_gene': 'GC17P070294', 'score': 0.44}, {'connected_gene': 'GC17P070276', 'score': 0.39}]
chr17	GH17I070527	70527001	70527889	0.87	[{'connected_gene': 'KCNJ2', 'score': 8.32}, {'connected_gene': 'GC17M070495', 'score': 0.29}, {'connected_gene': 'PIR58465', 'score': 0.29}, {'connected_gene': 'PIR37193', 'score': 0.25}]
chr17	GH17I070290	70290148	70290563	0.31	[{'connected_gene': 'KCNJ2', 'score': 19.55}, {'connected_gene': 'GC17P070294', 'score': 0.77}, {'connected_gene': 'GC17P070276', 'score': 0.39}]
chr17	GH17I070343	70343169	70343461	0.37	[{'connected_gene': 'KCNJ2', 'score': 13.87}, {'connected_gene': 'GC17P070324', 'score': 0.37}, {'connected_gene': 'ENSG00000267109', 'score': 0.31}]
chr17	GH17I070288	70288555	70289024	0.51	[{'connected_gene': 'KCNJ2', 'score': 24.49}, {'connected_gene': 'GC17P070294', 'score': 0.44}, {'connected_gene': 'GC17P070276', 'score': 0.39}]
chr17	GH17I070292	70292549	70292693	0.39	[{'connected_gene': 'KCNJ2', 'score': 14.5}, {'connected_gene': 'GC17P070294', 'score': 0.77}, {'connected_gene': 'GC17M070291', 'score': 0.39}, {'connected_gene': 'GC17P070276', 'score': 0.37}]
chr17	GH17I070313	70313058	70315199	1.12	[{'connected_gene': 'KCNJ2', 'score': 23.75}, {'connected_gene': 'GC17M070291', 'score': 0.44}, {'connected_gene': 'GC17P070324', 'score': 0.39}, {'connected_gene': 'ENSG00000267109', 'score': 0.23}]
chr17	GH17I070298	70298933	70299540	0.78	[{'connected_gene': 'KCNJ2', 'score': 21.44}, {'connected_gene': 'ENSG00000267194', 'score': 5.95}, {'connected_gene': 'GC17P070294', 'score': 0.77}, {'connected_gene': 'GC17M070291', 'score': 0.44}]
chr17	GH17I070286	70286232	70286820	0.24	[{'connected_gene': 'KCNJ2', 'score': 27.07}, {'connected_gene': 'GC17P070294', 'score': 0.44}, {'connected_gene': 'GC17P070276', 'score': 0.44}]
chr17	GH17I070156	70156643	70161344	0.46	[{'connected_gene': 'LOC105371882', 'score': 550.77}, {'connected_gene': 'LOC105371881', 'score': 11.24}, {'connected_gene': 'KCNJ2-AS1', 'score': 6.26}, {'connected_gene': 'KCNJ2', 'score': 0.44}]
chr17	GH17I070164	70164115	70166147	0.31	[{'connected_gene': 'LOC105371881', 'score': 10.96}, {'connected_gene': 'KCNJ2-AS1', 'score': 6.42}, {'connected_gene': 'KCNJ2', 'score': 0.77}, {'connected_gene': 'GC17M070164', 'score': 0.77}, {'connected_gene': 'LOC105371882', 'score': 0.44}]
chr17	GH17I070173	70173008	70174642	0.52	[{'connected_gene': 'GC17M070172', 'score': 550.77}, {'connected_gene': 'KCNJ2-AS1', 'score': 7.05}, {'connected_gene': 'KCNJ2', 'score': 0.44}, {'connected_gene': 'CALM2P1', 'score': 0.2}]
chr17	GH17I069759	69759966	69765234	1.28	[{'connected_gene': 'GC17P069764', 'score': 550.77}, {'connected_gene': 'KCNJ2', 'score': 8.85}, {'connected_gene': 'GC17M069737', 'score': 0.34}, {'connected_gene': 'LINC01483', 'score': 0.09}]
chr17	GH17I070296	70295952	70296354	0.33	[{'connected_gene': 'GC17P070294', 'score': 550.77}, {'connected_gene': 'KCNJ2', 'score': 18.44}, {'connected_gene': 'GC17M070291', 'score': 0.44}]
chr17	GH17I070295	70295001	70295858	0.6	[{'connected_gene': 'GC17P070294', 'score': 550.77}, {'connected_gene': 'KCNJ2', 'score': 26.29}, {'connected_gene': 'GC17M070291', 'score': 0.44}]