PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr19	11456842	11456853	CAGE_peak_4_at_TMEM205_5end
chr19	11456872	11456896	CAGE_peak_3_at_TMEM205_5end
chr19	11456905	11456930	CAGE_peak_2_at_TMEM205_5end
chr19	11456935	11456981	CAGE_peak_1_at_TMEM205_5end
chr19	11457102	11457109	CAGE_peak_10_at_TMEM205_5end
chr19	11457128	11457146	CAGE_peak_6_at_TMEM205_5end
chr19	11457162	11457170	CAGE_peak_7_at_TMEM205_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I011034	11034456	11037071	0.88	[{'connected_gene': 'SMARCA4', 'score': 9.15}, {'connected_gene': 'ILF3-AS1', 'score': 7.66}, {'connected_gene': 'TMEM205', 'score': 4.31}, {'connected_gene': 'ENSG00000278643', 'score': 0.77}, {'connected_gene': 'PIR38577', 'score': 0.37}]
chr19	GH19I011369	11369725	11369854	0.6	[{'connected_gene': 'TMEM205', 'score': 12.65}, {'connected_gene': 'RAB3D', 'score': 12.65}, {'connected_gene': 'CCDC159', 'score': 12.63}, {'connected_gene': 'TSPAN16', 'score': 12.11}, {'connected_gene': 'SWSAP1', 'score': 0.77}, {'connected_gene': 'ENSG00000267277', 'score': 0.44}, {'connected_gene': 'PLPPR2', 'score': 0.39}]
chr19	GH19I011380	11379565	11379714	0.49	[{'connected_gene': 'TMEM205', 'score': 12.18}, {'connected_gene': 'CCDC159', 'score': 12.18}, {'connected_gene': 'RAB3D', 'score': 12.18}, {'connected_gene': 'EPOR', 'score': 0.77}, {'connected_gene': 'PIR61774', 'score': 0.77}]
chr19	GH19I011379	11379797	11384934	2.3	[{'connected_gene': 'EPOR', 'score': 550.77}, {'connected_gene': 'KRI1', 'score': 50.83}, {'connected_gene': 'ILF3', 'score': 48.58}, {'connected_gene': 'TIMM29', 'score': 33.13}, {'connected_gene': 'ZNF44', 'score': 30.47}, {'connected_gene': 'ZNF136', 'score': 28.81}, {'connected_gene': 'ZNF433', 'score': 22.96}, {'connected_gene': 'ZNF878', 'score': 22.76}, {'connected_gene': 'ZNF20', 'score': 20.78}, {'connected_gene': 'ZNF563', 'score': 18.33}, {'connected_gene': 'ZNF763', 'score': 17.76}, {'connected_gene': 'CDC37', 'score': 15.06}, {'connected_gene': 'ZNF700', 'score': 14.29}, {'connected_gene': 'ZNF844', 'score': 14.28}, {'connected_gene': 'ZNF441', 'score': 14.11}, {'connected_gene': 'RGL3', 'score': 14.08}, {'connected_gene': 'ZNF627', 'score': 13.75}, {'connected_gene': 'SWSAP1', 'score': 12.63}, {'connected_gene': 'ENSG00000242615', 'score': 12.32}, {'connected_gene': 'TMEM205', 'score': 12.16}, {'connected_gene': 'CCDC159', 'score': 12.16}, {'connected_gene': 'RAB3D', 'score': 12.16}, {'connected_gene': 'ZNF442', 'score': 12.03}, {'connected_gene': 'ZNF433-AS1', 'score': 11.2}, {'connected_gene': 'CARM1', 'score': 10.9}, {'connected_gene': 'LOC100289333', 'score': 9.76}, {'connected_gene': 'KANK2', 'score': 4.69}, {'connected_gene': 'PIR61774', 'score': 0.44}]
chr19	GH19I011115	11115818	11117092	0.43	[{'connected_gene': 'SPC24', 'score': 5.69}, {'connected_gene': 'TMEM205', 'score': 4.98}, {'connected_gene': 'MIR6886', 'score': 0.77}, {'connected_gene': 'LDLR', 'score': 0.31}]
chr19	GH19I011105	11105794	11107153	0.77	[{'connected_gene': 'SPC24', 'score': 6.06}, {'connected_gene': 'TMEM205', 'score': 4.47}, {'connected_gene': 'MIR6886', 'score': 0.44}, {'connected_gene': 'LDLR', 'score': 0.37}]
chr19	GH19I011113	11113018	11113937	0.43	[{'connected_gene': 'MIR6886', 'score': 550.77}, {'connected_gene': 'TMEM205', 'score': 4.98}, {'connected_gene': 'LDLR', 'score': 0.34}, {'connected_gene': 'SPC24', 'score': 0.26}]
chr19	GH19I011343	11343256	11348236	2.12	[{'connected_gene': 'PIR37751', 'score': 550.77}, {'connected_gene': 'CCDC159', 'score': 550.77}, {'connected_gene': 'TMEM205', 'score': 550.77}, {'connected_gene': 'PIR44072', 'score': 550.77}, {'connected_gene': 'RAB3D', 'score': 550.77}, {'connected_gene': 'ILF3', 'score': 92.13}, {'connected_gene': 'ZNF136', 'score': 78.4}, {'connected_gene': 'KRI1', 'score': 77.84}, {'connected_gene': 'ZNF627', 'score': 62.92}, {'connected_gene': 'ZNF844', 'score': 55.62}, {'connected_gene': 'ZNF44', 'score': 52.29}, {'connected_gene': 'ZNF625', 'score': 43.61}, {'connected_gene': 'TIMM29', 'score': 43.51}, {'connected_gene': 'ZNF20', 'score': 42.87}, {'connected_gene': 'ZNF441', 'score': 41.48}, {'connected_gene': 'ZNF491', 'score': 34.62}, {'connected_gene': 'ZNF763', 'score': 33.85}, {'connected_gene': 'ZNF433', 'score': 33.84}, {'connected_gene': 'ZNF700', 'score': 29.7}, {'connected_gene': 'ZNF788', 'score': 23.81}, {'connected_gene': 'ZNF878', 'score': 22.8}, {'connected_gene': 'CDC37', 'score': 22.57}, {'connected_gene': 'ENSG00000242615', 'score': 21.46}, {'connected_gene': 'ZNF440', 'score': 18.47}, {'connected_gene': 'ZNF823', 'score': 13.4}, {'connected_gene': 'YIPF2', 'score': 11.18}, {'connected_gene': 'ZNF887P', 'score': 11.18}, {'connected_gene': 'ILF3-AS1', 'score': 11.08}, {'connected_gene': 'CARM1', 'score': 10.91}, {'connected_gene': 'ZNF439', 'score': 10.8}, {'connected_gene': 'RPL28P5', 'score': 10.69}, {'connected_gene': 'QTRT1', 'score': 9.74}, {'connected_gene': 'RPL18AP13', 'score': 9.72}, {'connected_gene': 'ENSG00000267174', 'score': 6.44}]
chr19	GH19I011373	11373205	11379434	2.53	[{'connected_gene': 'PIR61774', 'score': 550.77}, {'connected_gene': 'ENSG00000267277', 'score': 550.77}, {'connected_gene': 'SWSAP1', 'score': 550.77}, {'connected_gene': 'ILF3', 'score': 48.6}, {'connected_gene': 'KRI1', 'score': 43.59}, {'connected_gene': 'ZNF627', 'score': 37.21}, {'connected_gene': 'ZNF136', 'score': 35.31}, {'connected_gene': 'ZNF442', 'score': 35.14}, {'connected_gene': 'ZNF844', 'score': 34.32}, {'connected_gene': 'ZNF44', 'score': 29.56}, {'connected_gene': 'TIMM29', 'score': 29.24}, {'connected_gene': 'ZNF625', 'score': 24.43}, {'connected_gene': 'ZNF823', 'score': 23.77}, {'connected_gene': 'ZNF491', 'score': 23.26}, {'connected_gene': 'ZNF563', 'score': 22.85}, {'connected_gene': 'ZNF20', 'score': 21.65}, {'connected_gene': 'ZNF763', 'score': 18.75}, {'connected_gene': 'ZNF441', 'score': 12.34}, {'connected_gene': 'TMEM205', 'score': 12.2}, {'connected_gene': 'CCDC159', 'score': 12.18}, {'connected_gene': 'RAB3D', 'score': 12.18}, {'connected_gene': 'YIPF2', 'score': 12.07}, {'connected_gene': 'ZNF878', 'score': 11.83}, {'connected_gene': 'HNRNPA1P10', 'score': 11.52}, {'connected_gene': 'ZNF887P', 'score': 11.18}, {'connected_gene': 'CARM1', 'score': 10.9}, {'connected_gene': 'ZNF700', 'score': 10.41}, {'connected_gene': 'RPL18AP13', 'score': 9.74}, {'connected_gene': 'QTRT1', 'score': 9.73}, {'connected_gene': 'CDC37', 'score': 9.73}, {'connected_gene': 'PLPPR2', 'score': 7.81}, {'connected_gene': 'ELAVL3', 'score': 6.16}, {'connected_gene': 'PRKCSH', 'score': 5.16}, {'connected_gene': 'ZNF439', 'score': 2.17}, {'connected_gene': 'CCDC151', 'score': 2.05}, {'connected_gene': 'ZNF653', 'score': 2.01}, {'connected_gene': 'SMARCA4', 'score': 1.58}, {'connected_gene': 'EPOR', 'score': 0.44}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000586218	[[11453451, 11453796], [11455927, 11456091], [11456802, 11456886]]	[[11453490, 11453796], [11455927, 11456008]]
ENST00000593256	[[11453451, 11453796], [11455927, 11456091], [11456195, 11456304], [11456802, 11456976]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000447337	[[11453451, 11453796], [11455927, 11456091], [11456195, 11456304], [11456683, 11456981]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000354882	[[11453453, 11453796], [11455927, 11456091], [11456195, 11456722]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000585722	[[11453453, 11453796], [11455927, 11456731]]	None
ENST00000586590	[[11453453, 11453796], [11455927, 11456091], [11456195, 11456304], [11456883, 11456944]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000586956	[[11453453, 11453796], [11455927, 11456091], [11456195, 11456413], [11456683, 11456961]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000589555	[[11453454, 11453796], [11455927, 11456091], [11456195, 11456413], [11456883, 11456947]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000587948	[[11453454, 11453796], [11455927, 11456091], [11456195, 11456304], [11457009, 11457082]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000588560	[[11453460, 11453796], [11455927, 11456091], [11456195, 11456413], [11456802, 11456924]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000588321	[[11453485, 11453776], [11455913, 11456932]]	None
ENST00000586701	[[11453517, 11453796], [11455927, 11456091], [11456883, 11457003]]	[[11453517, 11453796], [11455927, 11456008]]
ENST00000592952	[[11453525, 11453796], [11456195, 11456304], [11456883, 11456931]]	[[11453525, 11453796], [11456195, 11456295]]
ENST00000590482	[[11453548, 11453796], [11455927, 11456091], [11456195, 11456304], [11457096, 11457194]]	[[11453548, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000591677	[[11453739, 11453796], [11455927, 11456091], [11456195, 11456304], [11456683, 11456981]]	[[11453739, 11453796], [11455927, 11456091], [11456195, 11456295]]
ENST00000590788	[[11455927, 11456091], [11456195, 11456304], [11456818, 11456938]]	[[11455927, 11456091], [11456195, 11456295]]
NM_198536	[[11453451, 11453796], [11455927, 11456091], [11456195, 11456981]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
NM_033408	[[11453451, 11453796], [11455927, 11456091], [11456195, 11456304], [11456683, 11456981]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
NM_001321112	[[11453451, 11453796], [11455927, 11456091], [11456195, 11456413], [11456802, 11456981]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
NM_001145416	[[11453451, 11453796], [11455927, 11456091], [11456195, 11456304], [11456802, 11456981]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
NM_001321114	[[11453451, 11453796], [11455927, 11456091], [11456195, 11456413], [11456883, 11456981]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]
NM_001321113	[[11453451, 11453796], [11455927, 11456091], [11456195, 11456304], [11456883, 11456981]]	[[11453490, 11453796], [11455927, 11456091], [11456195, 11456295]]