PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000394272	[[91474147, 91474635], [91474933, 91475174], [91475284, 91475340], [91475658, 91475799]]	[[91474504, 91474635], [91474933, 91475174], [91475284, 91475340], [91475658, 91475770]]
ENST00000330334	[[91474154, 91474786], [91474933, 91475174], [91475284, 91475340], [91475658, 91475776]]	[[91474772, 91474786], [91474933, 91475174], [91475284, 91475340], [91475658, 91475770]]
ENST00000494993	[[91474154, 91474635], [91474933, 91475174], [91475284, 91475782]]	None
ENST00000559898	[[91474328, 91475174], [91475284, 91475340], [91475658, 91475780]]	[[91474910, 91475174], [91475284, 91475340], [91475658, 91475770]]
ENST00000559834	[[91474380, 91474635], [91474933, 91475754]]	None
ENST00000561036	[[91474566, 91474635], [91474933, 91475174], [91475284, 91475340], [91475615, 91475706]]	[[91474566, 91474635], [91474933, 91475174], [91475284, 91475340], [91475615, 91475706]]
NR_104447	[[91474147, 91474635], [91474933, 91475174], [91475284, 91475340], [91475615, 91475799]]	None
NM_198527	[[91474147, 91474786], [91474933, 91475174], [91475284, 91475340], [91475658, 91475799]]	[[91474772, 91474786], [91474933, 91475174], [91475284, 91475340], [91475658, 91475770]]
NM_001286451	[[91474147, 91474635], [91474933, 91475174], [91475284, 91475340], [91475658, 91475799]]	[[91474504, 91474635], [91474933, 91475174], [91475284, 91475340], [91475658, 91475770]]

Promoter

Chrom	Start	End	Description
chr15	91475727	91475742	CAGE_peak_2_at_HDDC3_5end
chr15	91475747	91475802	CAGE_peak_1_at_HDDC3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I090928	90928001	90933160	2.32	[{'connected_gene': 'UNC45A', 'score': 597.61}, {'connected_gene': 'HDDC3', 'score': 550.77}, {'connected_gene': 'RCCD1', 'score': 18.35}, {'connected_gene': 'ENSG00000259212', 'score': 13.29}, {'connected_gene': 'ENSG00000259314', 'score': 13.03}, {'connected_gene': 'MAN2A2', 'score': 12.57}, {'connected_gene': 'FES', 'score': 12.51}, {'connected_gene': 'ENSG00000224441', 'score': 0.77}]
chr15	GH15I090834	90834644	90835111	0.79	[{'connected_gene': 'FURIN', 'score': 12.56}, {'connected_gene': 'FES', 'score': 12.51}, {'connected_gene': 'VPS33B-DT', 'score': 12.35}, {'connected_gene': 'HDDC3', 'score': 11.42}, {'connected_gene': 'UNC45A', 'score': 11.42}, {'connected_gene': 'ENSG00000200677', 'score': 11.01}, {'connected_gene': 'LOC105370969', 'score': 0.77}, {'connected_gene': 'GC15M090794', 'score': 0.39}]
chr15	GH15I090933	90933291	90933440	0.46	[{'connected_gene': 'HDDC3', 'score': 550.77}, {'connected_gene': 'ENSG00000224441', 'score': 550.77}, {'connected_gene': 'UNC45A', 'score': 0.77}]
chr15	GH15I090986	90986931	90987080	0.6	[{'connected_gene': 'VPS33B', 'score': 12.3}, {'connected_gene': 'VPS33B-DT', 'score': 12.3}, {'connected_gene': 'HDDC3', 'score': 10.95}, {'connected_gene': 'ENSG00000224441', 'score': 10.95}, {'connected_gene': 'UNC45A', 'score': 10.94}, {'connected_gene': 'GC15M090978', 'score': 0.44}, {'connected_gene': 'PRC1', 'score': 0.44}, {'connected_gene': 'ENSG00000200142', 'score': 0.44}, {'connected_gene': 'PRC1-AS1', 'score': 0.34}, {'connected_gene': 'GC15P090938', 'score': 0.25}]
chr15	GH15I090829	90829260	90831892	1.39	[{'connected_gene': 'FES', 'score': 24.13}, {'connected_gene': 'UNC45A', 'score': 13.99}, {'connected_gene': 'FURIN', 'score': 12.54}, {'connected_gene': 'VPS33B-DT', 'score': 12.34}, {'connected_gene': 'HDDC3', 'score': 11.41}, {'connected_gene': 'ENSG00000200677', 'score': 11.01}, {'connected_gene': 'IQGAP1', 'score': 3.52}, {'connected_gene': 'LOC105370969', 'score': 0.44}, {'connected_gene': 'GC15M090794', 'score': 0.39}]
chr15	GH15I090835	90835911	90842736	1.71	[{'connected_gene': 'LOC105370969', 'score': 559.05}, {'connected_gene': 'UNC45A', 'score': 24.0}, {'connected_gene': 'FES', 'score': 20.55}, {'connected_gene': 'BLM', 'score': 17.98}, {'connected_gene': 'FURIN', 'score': 13.79}, {'connected_gene': 'VPS33B-DT', 'score': 13.57}, {'connected_gene': 'LOC100631255', 'score': 12.19}, {'connected_gene': 'MAN2A2', 'score': 11.75}, {'connected_gene': 'HDDC3', 'score': 11.42}, {'connected_gene': 'ENSG00000259314', 'score': 11.27}, {'connected_gene': 'ENSG00000200677', 'score': 11.01}, {'connected_gene': 'VPS33B', 'score': 10.72}, {'connected_gene': 'CRTC3', 'score': 1.97}, {'connected_gene': 'IQGAP1', 'score': 1.32}, {'connected_gene': 'GC15M090794', 'score': 0.37}]