PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000338965	[[17373272, 17373586], [17378197, 17378548], [17388555, 17388894], [17390413, 17390511], [17393552, 17398888]]	[[17373516, 17373586], [17378197, 17378548], [17388555, 17388894], [17390413, 17390511], [17393552, 17394059]]
ENST00000530403	[[17373445, 17373586], [17378197, 17378548], [17388555, 17388894], [17390413, 17390511], [17393552, 17395021], [17395170, 17395201]]	[[17373516, 17373586], [17378197, 17378548], [17388555, 17388894], [17390413, 17390511], [17393552, 17394059]]
NM_001202439	[[17373308, 17373586], [17378197, 17378548], [17388555, 17388894], [17390413, 17390511], [17393552, 17398868]]	[[17373516, 17373586], [17378197, 17378548], [17388555, 17388894], [17390413, 17390511], [17393552, 17394059]]

Promoter

Chrom	Start	End	Description
chr11	17373293	17373324	CAGE_peak_3_at_B7H6_5end
chr11	17373338	17373356	CAGE_peak_2_at_B7H6_5end
chr11	17373513	17373572	CAGE_peak_1_at_B7H6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I017388	17388601	17390275	2.1	[{'connected_gene': 'KCNJ11', 'score': 570.53}, {'connected_gene': 'NCR3LG1', 'score': 18.24}, {'connected_gene': 'RPS13', 'score': 9.48}, {'connected_gene': 'GC11P017387', 'score': 0.77}, {'connected_gene': 'GC11P017401', 'score': 0.39}]
chr11	GH11I017354	17354774	17354923	0.72	[{'connected_gene': 'KCNJ11', 'score': 12.26}, {'connected_gene': 'LOC105376576', 'score': 0.77}, {'connected_gene': 'NCR3LG1', 'score': 0.77}, {'connected_gene': 'PIR55310', 'score': 0.37}]
chr11	GH11I017402	17402331	17403355	0.38	[{'connected_gene': 'NCR3LG1', 'score': 19.19}, {'connected_gene': 'ABCC8', 'score': 11.0}, {'connected_gene': 'RPS13', 'score': 5.18}, {'connected_gene': 'GC11P017401', 'score': 0.77}, {'connected_gene': 'GC11P017408', 'score': 0.44}]
chr11	GH11I017313	17313131	17315091	1.2	[{'connected_gene': 'NCR3LG1', 'score': 34.28}, {'connected_gene': 'RPS13', 'score': 19.42}, {'connected_gene': 'SNORD14B', 'score': 9.52}, {'connected_gene': 'GC11P017338', 'score': 0.34}, {'connected_gene': 'GC11M017256', 'score': 0.22}, {'connected_gene': 'NUCB2', 'score': 0.14}]
chr11	GH11I017280	17280601	17280800	0.91	[{'connected_gene': 'NCR3LG1', 'score': 8.87}, {'connected_gene': 'GC11M017256', 'score': 0.34}, {'connected_gene': 'GC11P017338', 'score': 0.22}, {'connected_gene': 'NUCB2', 'score': 0.19}]
chr11	GH11I017383	17383634	17383803	0.58	[{'connected_gene': 'NCR3LG1', 'score': 27.65}, {'connected_gene': 'KCNJ11', 'score': 16.34}, {'connected_gene': 'GC11M017380', 'score': 0.77}, {'connected_gene': 'GC11P017387', 'score': 0.77}]
chr11	GH11I017350	17350929	17351078	0.4	[{'connected_gene': 'NCR3LG1', 'score': 569.83}, {'connected_gene': 'LOC105376576', 'score': 550.77}, {'connected_gene': 'RPS13', 'score': 1.25}, {'connected_gene': 'GC11P017338', 'score': 0.39}]
chr11	GH11I017351	17351285	17354763	2.39	[{'connected_gene': 'NCR3LG1', 'score': 604.95}, {'connected_gene': 'LOC105376576', 'score': 550.77}, {'connected_gene': 'KCNJ11', 'score': 24.2}, {'connected_gene': 'RPS13', 'score': 1.29}, {'connected_gene': 'PIR55310', 'score': 0.37}]
chr11	GH11I017267	17267600	17267843	0.9	[{'connected_gene': 'OR7E14P', 'score': 20.91}, {'connected_gene': 'NCR3LG1', 'score': 10.32}, {'connected_gene': 'GC11M017256', 'score': 0.44}, {'connected_gene': 'NUCB2', 'score': 0.22}, {'connected_gene': 'GC11P017338', 'score': 0.19}]
chr11	GH11I017385	17385737	17387343	1.12	[{'connected_gene': 'GC11P017387', 'score': 550.77}, {'connected_gene': 'KCNJ11', 'score': 19.75}, {'connected_gene': 'NCR3LG1', 'score': 14.59}, {'connected_gene': 'GC11M017380', 'score': 0.77}]
chr11	GH11I017399	17399806	17400853	0.43	[{'connected_gene': 'GC11P017401', 'score': 550.77}, {'connected_gene': 'NCR3LG1', 'score': 19.27}, {'connected_gene': 'ENSG00000260196', 'score': 11.72}, {'connected_gene': 'ABCC8', 'score': 11.34}, {'connected_gene': 'KCNJ11', 'score': 6.43}, {'connected_gene': 'RPS13', 'score': 5.31}, {'connected_gene': 'GC11P017408', 'score': 0.44}]
chr11	GH11I017401	17401109	17401509	0.4	[{'connected_gene': 'GC11P017401', 'score': 550.77}, {'connected_gene': 'NCR3LG1', 'score': 19.88}, {'connected_gene': 'ABCC8', 'score': 11.34}, {'connected_gene': 'GC11P017408', 'score': 0.44}]
chr11	GH11I017344	17344014	17344183	0.38	[{'connected_gene': 'GC11P017338', 'score': 0.44}, {'connected_gene': 'NCR3LG1', 'score': 0.44}, {'connected_gene': 'NUCB2', 'score': 0.12}]
chr11	GH11I017381	17381007	17381943	0.2	[{'connected_gene': 'GC11P017379', 'score': 550.77}, {'connected_gene': 'GC11M017380', 'score': 550.77}, {'connected_gene': 'ENSG00000260196', 'score': 550.77}, {'connected_gene': 'NCR3LG1', 'score': 26.18}, {'connected_gene': 'KCNJ11', 'score': 0.44}]