PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000560741	[[89179383, 89179523], [89182573, 89182825], [89195340, 89195541], [89198645, 89198852]]	[[89182597, 89182825], [89195340, 89195541], [89198645, 89198762]]
ENST00000558992	[[89179400, 89179523], [89180592, 89180659]]	None
ENST00000306072	[[89181973, 89182307], [89182573, 89182825], [89195340, 89195541], [89198645, 89199714]]	[[89182597, 89182825], [89195340, 89195541], [89198645, 89198762]]
ENST00000379224	[[89182171, 89182307], [89182573, 89182825], [89193465, 89193617]]	[[89182597, 89182825], [89193465, 89193501]]
ENST00000559876	[[89182183, 89182307], [89182573, 89182825], [89195400, 89195541], [89198645, 89198742]]	[[89182597, 89182825], [89195400, 89195541], [89198645, 89198742]]
ENST00000558942	[[89182193, 89182307], [89182573, 89182825], [89193465, 89195541], [89198645, 89198847]]	None
ENST00000560573	[[89182273, 89182409], [89182573, 89182825], [89193465, 89195541], [89198645, 89198879]]	None
ENST00000557824	[[89190142, 89195541], [89198645, 89198880]]	None
ENST00000558236	[[89191050, 89191233], [89195340, 89195417]]	None
ENST00000560746	[[89193483, 89193560], [89194596, 89194812], [89195340, 89195541], [89198645, 89198881]]	None
ENST00000546338	[[89195266, 89195541], [89198650, 89198856]]	None
NR_130134	[[89178867, 89178931], [89195340, 89195541], [89198645, 89199575]]	None
NM_001303235	[[89178867, 89178931], [89193465, 89195541], [89198645, 89199575]]	[[89195145, 89195541], [89198645, 89198762]]
NM_001303233	[[89178867, 89178931], [89182573, 89182825], [89195340, 89195541], [89198645, 89199575]]	[[89182597, 89182825], [89195340, 89195541], [89198645, 89198762]]
NM_001303234	[[89178867, 89178931], [89179397, 89179523], [89182573, 89182825], [89195340, 89195541], [89198645, 89199575]]	[[89182597, 89182825], [89195340, 89195541], [89198645, 89198762]]
NM_001303237	[[89181973, 89182307], [89182573, 89182825], [89195400, 89195541], [89198645, 89199575]]	[[89182597, 89182825], [89195400, 89195541], [89198645, 89198762]]
NM_002201	[[89181973, 89182307], [89182573, 89182825], [89195340, 89195541], [89198645, 89199575]]	[[89182597, 89182825], [89195340, 89195541], [89198645, 89198762]]
NM_001303236	[[89181973, 89182409], [89182573, 89182825], [89193465, 89195541], [89198645, 89199575]]	[[89195145, 89195541], [89198645, 89198762]]

Promoter

Chrom	Start	End	Description
chr15	89178835	89178856	CAGE_peak_7_at_ISG20_5end
chr15	89178857	89178898	CAGE_peak_3_at_ISG20_5end
chr15	89182034	89182039	CAGE_peak_8_at_ISG20_5end
chr15	89182156	89182177	CAGE_peak_6_at_ISG20_5end
chr15	89182178	89182202	CAGE_peak_4_at_ISG20_5end
chr15	89182208	89182225	CAGE_peak_5_at_ISG20_5end
chr15	89182240	89182265	CAGE_peak_1_at_ISG20_5end
chr15	89182269	89182283	CAGE_peak_2_at_ISG20_5end
chr15	89182552	89182578	CAGE_peak_9_at_ISG20_5end
chr15	89182587	89182600	CAGE_peak_11_at_ISG20_5end
chr15	89191020	89191067	CAGE_peak_13_at_ISG20_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I088620	88620624	88632285	2.26	[{'connected_gene': 'AEN', 'score': 557.3}, {'connected_gene': 'POLG', 'score': 19.76}, {'connected_gene': 'FANCI', 'score': 10.39}, {'connected_gene': 'ISG20', 'score': 9.43}, {'connected_gene': 'PIR37400', 'score': 0.44}, {'connected_gene': 'GC15M088633', 'score': 0.44}, {'connected_gene': 'MIR3529', 'score': 0.39}]
chr15	GH15I088662	88662250	88662399	0.31	[{'connected_gene': 'AEN', 'score': 12.17}, {'connected_gene': 'MIR7-2', 'score': 10.58}, {'connected_gene': 'ENSG00000173867', 'score': 10.51}, {'connected_gene': 'MRPL46', 'score': 10.49}, {'connected_gene': 'MRPS11', 'score': 10.49}, {'connected_gene': 'ISG20', 'score': 0.31}, {'connected_gene': 'PIR50540', 'score': 0.29}]
chr15	GH15I088664	88664530	88664679	0.49	[{'connected_gene': 'AEN', 'score': 12.17}, {'connected_gene': 'MIR7-2', 'score': 10.58}, {'connected_gene': 'ENSG00000173867', 'score': 10.51}, {'connected_gene': 'MRPL46', 'score': 10.49}, {'connected_gene': 'MRPS11', 'score': 10.49}, {'connected_gene': 'ISG20', 'score': 0.31}, {'connected_gene': 'PIR50540', 'score': 0.29}]
chr15	GH15I088562	88562862	88564412	0.84	[{'connected_gene': 'POLG', 'score': 12.8}, {'connected_gene': 'FANCI', 'score': 12.53}, {'connected_gene': 'LINC01586', 'score': 7.32}, {'connected_gene': 'ISG20', 'score': 4.78}, {'connected_gene': 'ENSG00000173867', 'score': 4.78}, {'connected_gene': 'ENSG00000259569', 'score': 0.77}, {'connected_gene': 'DET1', 'score': 0.37}]
chr15	GH15I088681	88681518	88682196	0.72	[{'connected_gene': 'MIR7-2', 'score': 11.16}, {'connected_gene': 'AEN', 'score': 10.83}, {'connected_gene': 'PIR50540', 'score': 0.37}, {'connected_gene': 'ISG20', 'score': 0.25}]
chr15	GH15I088659	88659186	88660345	0.78	[{'connected_gene': 'ISG20', 'score': 16.03}, {'connected_gene': 'AEN', 'score': 11.96}, {'connected_gene': 'ENSG00000173867', 'score': 10.7}, {'connected_gene': 'MRPS11', 'score': 10.67}, {'connected_gene': 'MRPL46', 'score': 10.67}, {'connected_gene': 'HAPLN3', 'score': 10.26}, {'connected_gene': 'ACAN', 'score': 5.06}, {'connected_gene': 'PIR50540', 'score': 0.28}]
chr15	GH15I088652	88652586	88653378	0.63	[{'connected_gene': 'ISG20', 'score': 13.32}, {'connected_gene': 'AEN', 'score': 11.99}, {'connected_gene': 'POLG', 'score': 4.58}, {'connected_gene': 'PIR50540', 'score': 0.26}]
chr15	GH15I088655	88655070	88658039	1.19	[{'connected_gene': 'ISG20', 'score': 27.59}, {'connected_gene': 'AEN', 'score': 12.63}, {'connected_gene': 'MIR7-2', 'score': 11.32}, {'connected_gene': 'ENSG00000173867', 'score': 10.7}, {'connected_gene': 'MRPS11', 'score': 10.67}, {'connected_gene': 'MRPL46', 'score': 10.67}, {'connected_gene': 'HAPLN3', 'score': 10.26}, {'connected_gene': 'PIR50540', 'score': 0.26}]
chr15	GH15I088634	88634201	88642965	2.82	[{'connected_gene': 'ISG20', 'score': 585.21}, {'connected_gene': 'AEN', 'score': 7.42}, {'connected_gene': 'ABHD2', 'score': 1.8}, {'connected_gene': 'PIR50540', 'score': 0.22}]
chr15	GH15I088644	88644450	88646956	0.54	[{'connected_gene': 'ISG20', 'score': 11.32}, {'connected_gene': 'PIR50540', 'score': 0.23}]
chr15	GH15I088647	88647037	88652330	1.23	[{'connected_gene': 'ISG20', 'score': 13.22}, {'connected_gene': 'PIR50540', 'score': 0.25}]
chr15	GH15I089124	89124978	89141178	1.74	[{'connected_gene': 'ABHD2', 'score': 37.68}, {'connected_gene': 'LOC102724566', 'score': 10.78}, {'connected_gene': 'DET1', 'score': 6.08}, {'connected_gene': 'ISG20', 'score': 1.35}, {'connected_gene': 'HMGB1P8', 'score': 0.77}, {'connected_gene': 'GC15M089136', 'score': 0.77}, {'connected_gene': 'RNU7-195P', 'score': 0.39}]
chr15	GH15I089086	89086690	89095682	2.57	[{'connected_gene': 'ABHD2', 'score': 561.49}, {'connected_gene': 'LOC102724566', 'score': 13.74}, {'connected_gene': 'POLG', 'score': 13.05}, {'connected_gene': 'RNU7-195P', 'score': 12.81}, {'connected_gene': 'ENSG00000261407', 'score': 11.51}, {'connected_gene': 'LOC100631255', 'score': 10.74}, {'connected_gene': 'FANCI', 'score': 10.46}, {'connected_gene': 'TICRR', 'score': 9.8}, {'connected_gene': 'HAPLN3', 'score': 1.84}, {'connected_gene': 'ISG20', 'score': 1.66}, {'connected_gene': 'GC15M089095', 'score': 0.39}]
chr15	GH15I088611	88611770	88611919	0.2	[{'connected_gene': 'MIR3529', 'score': 550.77}, {'connected_gene': 'GC15P088613', 'score': 550.77}, {'connected_gene': 'GC15P088612', 'score': 550.77}, {'connected_gene': 'MIR7-2', 'score': 550.77}, {'connected_gene': 'ISG20', 'score': 4.85}, {'connected_gene': 'AEN', 'score': 0.44}]
chr15	GH15I088633	88633075	88633920	0.31	[{'connected_gene': 'PIR37400', 'score': 550.77}, {'connected_gene': 'GC15M088633', 'score': 550.77}, {'connected_gene': 'ISG20', 'score': 11.17}]