PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000380956	[[391738, 391809], [393097, 393368], [394820, 395007], [395846, 395935], [397107, 397252], [398827, 398935], [401423, 401777], [405017, 405130], [407454, 411447]]	[[393152, 393368], [394820, 395007], [395846, 395935], [397107, 397252], [398827, 398935], [401423, 401777], [405017, 405130], [407454, 407598]]
ENST00000468485	[[391751, 391809], [394820, 395007], [395846, 396074]]	None
ENST00000495137	[[391767, 391809], [394820, 395007], [395846, 395935], [397107, 397546]]	None
ENST00000493114	[[391767, 391809], [393097, 393368], [394820, 395007], [395846, 395935], [397107, 397252], [398827, 398935], [401423, 401777], [405017, 405130], [406765, 406899], [407454, 407618]]	[[393152, 393368], [394820, 395007], [395846, 395935], [397107, 397252], [398827, 398935], [401423, 401777], [405017, 405130], [406765, 406786]]
ENST00000469834	[[393278, 393368], [394820, 395007], [395846, 395915]]	None
NM_001195286	[[391738, 391809], [393097, 393368], [394820, 395007], [395846, 395935], [397110, 397252], [398827, 398935], [401423, 401777], [405017, 405130], [407454, 411443]]	[[393152, 393368], [394820, 395007], [395846, 395935], [397110, 397252], [398827, 398935], [401423, 401777], [405017, 405130], [407454, 407598]]
NR_046000	[[391738, 391809], [393097, 393368], [394820, 395007], [395846, 395935], [397110, 397252], [398827, 398935], [401423, 401777], [405017, 405130], [406765, 406899], [407454, 411443]]	None
NM_002460	[[391738, 391809], [393097, 393368], [394820, 395007], [395846, 395935], [397107, 397252], [398827, 398935], [401423, 401777], [405017, 405130], [407454, 411443]]	[[393152, 393368], [394820, 395007], [395846, 395935], [397107, 397252], [398827, 398935], [401423, 401777], [405017, 405130], [407454, 407598]]

Promoter

Chrom	Start	End	Description
chr6	391743	391759	CAGE_peak_1_at_IRF4_5end
chr6	396521	396527	CAGE_peak_4_at_IRF4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I000290	290008	300044	2.72	[{'connected_gene': 'DUSP22', 'score': 554.19}, {'connected_gene': 'EXOC2', 'score': 10.62}, {'connected_gene': 'IRF4', 'score': 9.54}, {'connected_gene': 'LOC102723922', 'score': 0.77}, {'connected_gene': 'GC06P000310', 'score': 0.37}]
chr6	GH06I000390	390872	394490	2.35	[{'connected_gene': 'IRF4', 'score': 576.18}, {'connected_gene': 'CICP18', 'score': 11.09}, {'connected_gene': 'ENSG00000205653', 'score': 10.57}, {'connected_gene': 'DUSP22', 'score': 3.3}, {'connected_gene': 'EXOC2', 'score': 1.25}, {'connected_gene': 'GC06P000406', 'score': 0.39}]
chr6	GH06I000219	219489	222459	1.54	[{'connected_gene': 'IRF4', 'score': 12.77}, {'connected_gene': 'DUSP22', 'score': 1.92}, {'connected_gene': 'PIR44572', 'score': 0.44}, {'connected_gene': 'GC06M000230', 'score': 0.44}, {'connected_gene': 'LOC285766', 'score': 0.37}]
chr6	GH06I000225	224385	226982	1.43	[{'connected_gene': 'IRF4', 'score': 13.5}, {'connected_gene': 'ENSG00000205653', 'score': 13.03}, {'connected_gene': 'DUSP22', 'score': 1.72}, {'connected_gene': 'PIR44572', 'score': 0.77}, {'connected_gene': 'GC06M000230', 'score': 0.77}, {'connected_gene': 'LOC285766', 'score': 0.34}]
chr6	GH06I000316	316370	318580	1.27	[{'connected_gene': 'IRF4', 'score': 14.32}, {'connected_gene': 'ENSG00000205653', 'score': 10.83}, {'connected_gene': 'DUSP22', 'score': 2.41}, {'connected_gene': 'PIR42293', 'score': 0.77}, {'connected_gene': 'GC06P000310', 'score': 0.44}]
chr6	GH06I000422	422274	423865	1.27	[{'connected_gene': 'IRF4', 'score': 10.09}, {'connected_gene': 'DUSP22', 'score': 1.57}, {'connected_gene': 'GC06P000406', 'score': 0.37}, {'connected_gene': 'GC06P000444', 'score': 0.34}]
chr6	GH06I000326	326986	328930	1.25	[{'connected_gene': 'IRF4', 'score': 11.66}, {'connected_gene': 'ENSG00000205653', 'score': 10.34}, {'connected_gene': 'PIR42293', 'score': 0.44}, {'connected_gene': 'GC06M000335', 'score': 0.39}, {'connected_gene': 'DUSP22', 'score': 0.28}]
chr6	GH06I000218	218120	219275	0.92	[{'connected_gene': 'IRF4', 'score': 11.15}, {'connected_gene': 'LOC285766', 'score': 0.39}, {'connected_gene': 'PIR44572', 'score': 0.39}, {'connected_gene': 'GC06M000230', 'score': 0.39}]
chr6	GH06I000304	304415	306268	0.83	[{'connected_gene': 'IRF4', 'score': 10.88}, {'connected_gene': 'GC06P000310', 'score': 0.77}, {'connected_gene': 'LOC102723922', 'score': 0.39}, {'connected_gene': 'DUSP22', 'score': 0.39}]
chr6	GH06I000306	306393	307878	0.93	[{'connected_gene': 'IRF4', 'score': 10.84}, {'connected_gene': 'GC06P000310', 'score': 0.77}, {'connected_gene': 'LOC102723922', 'score': 0.39}, {'connected_gene': 'DUSP22', 'score': 0.37}]
chr6	GH06I000389	389741	389890	0.89	[{'connected_gene': 'IRF4', 'score': 550.77}, {'connected_gene': 'ENSG00000205653', 'score': 10.74}, {'connected_gene': 'GC06M000362', 'score': 0.77}]
chr6	GH06I000395	395081	395230	0.72	[{'connected_gene': 'IRF4', 'score': 0.77}, {'connected_gene': 'GC06P000406', 'score': 0.39}]
chr6	GH06I000180	180834	181930	0.62	[{'connected_gene': 'LOC105374869', 'score': 550.77}, {'connected_gene': 'IRF4', 'score': 11.38}, {'connected_gene': 'ENSG00000218577', 'score': 0.39}, {'connected_gene': 'LOC285766', 'score': 0.34}]
chr6	GH06I000387	387336	387726	0.68	[{'connected_gene': 'GC06M000362', 'score': 550.77}, {'connected_gene': 'ENSG00000205653', 'score': 10.75}, {'connected_gene': 'DUSP22', 'score': 1.69}, {'connected_gene': 'IRF4', 'score': 0.77}]
chr6	GH06I000398	398191	400535	1.15	[{'connected_gene': 'ENSG00000205653', 'score': 10.85}, {'connected_gene': 'IRF4', 'score': 6.89}, {'connected_gene': 'DUSP22', 'score': 2.52}, {'connected_gene': 'EXOC2', 'score': 2.22}, {'connected_gene': 'GC06P000406', 'score': 0.44}]
chr6	GH06I000228	227922	228119	0.89	[{'connected_gene': 'PIR44572', 'score': 550.77}, {'connected_gene': 'GC06M000230', 'score': 550.77}, {'connected_gene': 'ENSG00000205653', 'score': 12.11}, {'connected_gene': 'IRF4', 'score': 11.71}, {'connected_gene': 'DUSP22', 'score': 1.52}, {'connected_gene': 'LOC285766', 'score': 0.34}]
chr6	GH06I000234	234806	237031	1.2	[{'connected_gene': 'ENSG00000205653', 'score': 11.18}, {'connected_gene': 'IRF4', 'score': 10.85}, {'connected_gene': 'DUSP22', 'score': 4.43}, {'connected_gene': 'LOC105374870', 'score': 0.77}, {'connected_gene': 'GC06M000261', 'score': 0.28}]
chr6	GH06I000321	321401	321800	0.74	[{'connected_gene': 'PIR42293', 'score': 550.77}, {'connected_gene': 'IRF4', 'score': 11.04}, {'connected_gene': 'GC06M000335', 'score': 0.37}, {'connected_gene': 'DUSP22', 'score': 0.31}]
chr6	GH06I000346	346714	346924	0.51	[{'connected_gene': 'PIR49830', 'score': 550.77}, {'connected_gene': 'PIR35740', 'score': 550.77}, {'connected_gene': 'IRF4', 'score': 10.68}, {'connected_gene': 'GC06M000335', 'score': 0.44}, {'connected_gene': 'DUSP22', 'score': 0.22}]
chr6	GH06I000323	321181	321330	0.8	[{'connected_gene': 'PIR42293', 'score': 550.77}, {'connected_gene': 'IRF4', 'score': 11.04}, {'connected_gene': 'GC06M000335', 'score': 0.37}, {'connected_gene': 'DUSP22', 'score': 0.31}]
chr6	GH06I000319	319799	320052	1.03	[{'connected_gene': 'PIR42293', 'score': 550.77}, {'connected_gene': 'IRF4', 'score': 15.46}, {'connected_gene': 'DUSP22', 'score': 3.41}, {'connected_gene': 'GC06P000310', 'score': 0.44}]
chr6	GH06I000562	562381	562570	0.2	[{'connected_gene': 'GC06M000555', 'score': 550.77}, {'connected_gene': 'ENSG00000205653', 'score': 10.01}, {'connected_gene': 'IRF4', 'score': 9.83}, {'connected_gene': 'ENSG00000230433', 'score': 0.28}, {'connected_gene': 'EXOC2', 'score': 0.12}]
chr6	GH06I000498	498099	500596	0.77	[{'connected_gene': 'ENSG00000230433', 'score': 12.9}, {'connected_gene': 'IRF4', 'score': 11.24}, {'connected_gene': 'ENSG00000205653', 'score': 10.21}, {'connected_gene': 'EXOC2', 'score': 6.36}, {'connected_gene': 'GC06P000481', 'score': 0.37}]
chr6	GH06I000501	501801	502479	0.96	[{'connected_gene': 'ENSG00000230433', 'score': 12.9}, {'connected_gene': 'IRF4', 'score': 11.24}, {'connected_gene': 'ENSG00000205653', 'score': 10.21}, {'connected_gene': 'GC06P000481', 'score': 0.34}, {'connected_gene': 'EXOC2', 'score': 0.08}]
chr6	GH06I000223	223023	223930	0.63	[{'connected_gene': 'ENSG00000205653', 'score': 12.85}, {'connected_gene': 'IRF4', 'score': 11.16}, {'connected_gene': 'PIR44572', 'score': 0.44}, {'connected_gene': 'GC06M000230', 'score': 0.44}, {'connected_gene': 'LOC285766', 'score': 0.37}]
chr6	GH06I000224	224221	224370	0.31	[{'connected_gene': 'ENSG00000205653', 'score': 12.85}, {'connected_gene': 'IRF4', 'score': 11.16}, {'connected_gene': 'PIR44572', 'score': 0.44}, {'connected_gene': 'GC06M000230', 'score': 0.44}, {'connected_gene': 'LOC285766', 'score': 0.37}]
chr6	GH06I000227	227421	227570	0.98	[{'connected_gene': 'ENSG00000205653', 'score': 12.11}, {'connected_gene': 'IRF4', 'score': 11.71}, {'connected_gene': 'PIR44572', 'score': 0.77}, {'connected_gene': 'GC06M000230', 'score': 0.77}, {'connected_gene': 'LOC285766', 'score': 0.34}]
chr6	GH06I000434	434454	435499	1.05	[{'connected_gene': 'ENSG00000230433', 'score': 11.3}, {'connected_gene': 'IRF4', 'score': 11.3}, {'connected_gene': 'HUS1B', 'score': 1.42}, {'connected_gene': 'GC06P000444', 'score': 0.44}, {'connected_gene': 'GC06P000406', 'score': 0.31}]
chr6	GH06I000309	309320	310270	0.76	[{'connected_gene': 'GC06P000310', 'score': 550.77}, {'connected_gene': 'ENSG00000205653', 'score': 10.43}, {'connected_gene': 'IRF4', 'score': 10.18}, {'connected_gene': 'LOC102723922', 'score': 0.37}, {'connected_gene': 'DUSP22', 'score': 0.37}]
chr6	GH06I000356	356658	357982	0.89	[{'connected_gene': 'GC06M000356', 'score': 550.77}, {'connected_gene': 'PIR52831', 'score': 550.77}, {'connected_gene': 'IRF4', 'score': 10.89}, {'connected_gene': 'ENSG00000205653', 'score': 9.91}, {'connected_gene': 'GC06P000367', 'score': 0.39}]
chr6	GH06I000407	403401	403550	0.6	[{'connected_gene': 'ENSG00000205653', 'score': 11.24}, {'connected_gene': 'GC06P000406', 'score': 0.77}, {'connected_gene': 'IRF4', 'score': 0.39}]
chr6	GH06I000404	404450	405377	0.52	[{'connected_gene': 'GC06P000406', 'score': 550.77}, {'connected_gene': 'ENSG00000205653', 'score': 11.24}, {'connected_gene': 'IRF4', 'score': 0.39}]
chr6	GH06I000354	354957	356560	0.52	[{'connected_gene': 'GC06M000356', 'score': 550.77}, {'connected_gene': 'PIR52831', 'score': 550.77}, {'connected_gene': 'IRF4', 'score': 11.03}, {'connected_gene': 'GC06P000367', 'score': 0.39}]
chr6	GH06I000446	446901	447050	0.2	[{'connected_gene': 'PIR55434', 'score': 550.77}, {'connected_gene': 'IRF4', 'score': 10.84}, {'connected_gene': 'GC06P000444', 'score': 0.77}]
chr6	GH06I000406	405421	405570	0.38	[{'connected_gene': 'GC06P000406', 'score': 550.77}, {'connected_gene': 'ENSG00000205653', 'score': 11.64}, {'connected_gene': 'IRF4', 'score': 0.39}]
chr6	GH06I000408	408701	408830	0.72	[{'connected_gene': 'ENSG00000205653', 'score': 11.64}, {'connected_gene': 'GC06P000406', 'score': 0.77}, {'connected_gene': 'IRF4', 'score': 0.37}, {'connected_gene': 'GC06P000444', 'score': 0.28}]
chr6	GH06I000396	396261	396410	0.66	[{'connected_gene': 'ENSG00000205653', 'score': 10.85}, {'connected_gene': 'IRF4', 'score': 7.11}, {'connected_gene': 'GC06P000406', 'score': 0.39}]
chr6	GH06I000405	404021	404310	0.46	[{'connected_gene': 'ENSG00000205653', 'score': 11.24}, {'connected_gene': 'GC06P000406', 'score': 0.77}, {'connected_gene': 'IRF4', 'score': 0.39}]
chr6	GH06I000403	403701	403850	0.54	[{'connected_gene': 'ENSG00000205653', 'score': 11.24}, {'connected_gene': 'GC06P000406', 'score': 0.77}, {'connected_gene': 'IRF4', 'score': 0.39}]
chr6	GH06I000229	229164	229558	1.01	[{'connected_gene': 'PIR44572', 'score': 550.77}, {'connected_gene': 'LOC105374870', 'score': 550.77}, {'connected_gene': 'GC06M000230', 'score': 550.77}, {'connected_gene': 'IRF4', 'score': 13.46}, {'connected_gene': 'ENSG00000205653', 'score': 12.08}, {'connected_gene': 'DUSP22', 'score': 1.94}, {'connected_gene': 'LOC285766', 'score': 0.34}]