PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377507	[[7979906, 7980983], [7993221, 7993356], [7995072, 7995203], [7997749, 7997816], [7998252, 7998390], [7998780, 7998888], [7999954, 8000138], [8000843, 8000926]]	[[7980894, 7980983], [7993221, 7993356], [7995072, 7995203], [7997749, 7997816], [7998252, 7998390], [7998780, 7998888], [7999954, 8000054]]
ENST00000492571	[[7993186, 7993356], [7995072, 7995203], [7996519, 7996623], [7997749, 7997816], [7998252, 7998364]]	[[7996574, 7996623], [7997749, 7997816], [7998252, 7998364]]
ENST00000474475	[[7981859, 7982081], [7993221, 7993356], [7995072, 7995160]]	[[7982040, 7982081], [7993221, 7993356], [7995072, 7995160]]
NM_001561	[[7975930, 7980983], [7993221, 7993356], [7995072, 7995203], [7997749, 7997816], [7998252, 7998390], [7998780, 7998888], [7999954, 8000138], [8000843, 8000993], [8003198, 8003225]]	[[7980894, 7980983], [7993221, 7993356], [7995072, 7995203], [7997749, 7997816], [7998252, 7998390], [7998780, 7998888], [7999954, 8000054]]

Promoter

Chrom	Start	End	Description
chr1	8000872	8000922	CAGE_peak_1_at_TNFRSF9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I007706	7706161	7706310	0.31	[{'connected_gene': 'VAMP3', 'score': 11.01}, {'connected_gene': 'ENSG00000236266', 'score': 10.2}, {'connected_gene': 'PER3', 'score': 10.16}, {'connected_gene': 'TNFRSF9', 'score': 10.07}, {'connected_gene': 'LOC105376689', 'score': 0.77}, {'connected_gene': 'CAMTA1', 'score': 0.03}]
chr1	GH01I007752	7752401	7753530	0.97	[{'connected_gene': 'PER3', 'score': 10.6}, {'connected_gene': 'TNFRSF9', 'score': 9.91}, {'connected_gene': 'ENSG00000270171', 'score': 5.53}, {'connected_gene': 'ENSG00000270035', 'score': 4.86}, {'connected_gene': 'VAMP3', 'score': 0.37}, {'connected_gene': 'LOC105376689', 'score': 0.25}, {'connected_gene': 'CAMTA1', 'score': 0.03}]
chr1	GH01I008283	8283021	8284137	0.96	[{'connected_gene': 'SLC45A1', 'score': 11.31}, {'connected_gene': 'TNFRSF9', 'score': 10.23}, {'connected_gene': 'GC01M008275', 'score': 0.44}, {'connected_gene': 'RNU6-991P', 'score': 0.44}]
chr1	GH01I008010	8010072	8010390	1.03	[{'connected_gene': 'SLC45A1', 'score': 12.81}, {'connected_gene': 'PARK7', 'score': 11.04}, {'connected_gene': 'TNFRSF9', 'score': 10.41}, {'connected_gene': 'ERRFI1', 'score': 3.09}, {'connected_gene': 'PER3', 'score': 1.45}, {'connected_gene': 'GC01P008012', 'score': 0.77}, {'connected_gene': 'ENSG00000284716', 'score': 0.39}]
chr1	GH01I008007	8007581	8007710	0.58	[{'connected_gene': 'SLC45A1', 'score': 11.28}, {'connected_gene': 'PARK7', 'score': 11.05}, {'connected_gene': 'TNFRSF9', 'score': 10.42}, {'connected_gene': 'GC01P008012', 'score': 0.77}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}, {'connected_gene': 'ERRFI1', 'score': 0.37}]
chr1	GH01I008012	8007301	8007421	0.63	[{'connected_gene': 'SLC45A1', 'score': 11.28}, {'connected_gene': 'PARK7', 'score': 11.05}, {'connected_gene': 'TNFRSF9', 'score': 10.42}, {'connected_gene': 'GC01P008012', 'score': 0.77}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}, {'connected_gene': 'ERRFI1', 'score': 0.37}]
chr1	GH01I008009	8008681	8008810	0.63	[{'connected_gene': 'SLC45A1', 'score': 11.28}, {'connected_gene': 'PARK7', 'score': 11.05}, {'connected_gene': 'TNFRSF9', 'score': 10.41}, {'connected_gene': 'GC01P008012', 'score': 0.77}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}, {'connected_gene': 'ERRFI1', 'score': 0.37}]
chr1	GH01I008014	8009161	8009310	0.66	[{'connected_gene': 'SLC45A1', 'score': 11.28}, {'connected_gene': 'PARK7', 'score': 11.05}, {'connected_gene': 'TNFRSF9', 'score': 10.41}, {'connected_gene': 'GC01P008012', 'score': 0.77}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}, {'connected_gene': 'ERRFI1', 'score': 0.37}]
chr1	GH01I008008	8007941	8008070	0.4	[{'connected_gene': 'SLC45A1', 'score': 11.28}, {'connected_gene': 'PARK7', 'score': 11.05}, {'connected_gene': 'TNFRSF9', 'score': 10.42}, {'connected_gene': 'GC01P008012', 'score': 0.77}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}, {'connected_gene': 'ERRFI1', 'score': 0.37}]
chr1	GH01I008426	8426478	8429034	1.28	[{'connected_gene': 'RERE', 'score': 18.29}, {'connected_gene': 'ENSG00000221083', 'score': 11.13}, {'connected_gene': 'TNFRSF9', 'score': 1.62}, {'connected_gene': 'LOC102724552', 'score': 0.77}, {'connected_gene': 'PIR35776', 'score': 0.37}, {'connected_gene': 'GC01M008444', 'score': 0.37}]
chr1	GH01I007890	7890842	7890858	0.35	[{'connected_gene': 'TNFRSF9', 'score': 1.78}, {'connected_gene': 'SLC45A1', 'score': 1.34}, {'connected_gene': 'UTS2', 'score': 0.34}, {'connected_gene': 'ENSG00000236266', 'score': 0.21}]
chr1	GH01I007887	7887590	7887875	0.22	[{'connected_gene': 'TNFRSF9', 'score': 2.53}, {'connected_gene': 'UTS2', 'score': 0.31}, {'connected_gene': 'ENSG00000236266', 'score': 0.21}]
chr1	GH01I007921	7921734	7922855	0.2	[{'connected_gene': 'UTS2', 'score': 23.55}, {'connected_gene': 'PER3', 'score': 10.47}, {'connected_gene': 'PARK7', 'score': 9.34}, {'connected_gene': 'PIR36767', 'score': 0.44}, {'connected_gene': 'TNFRSF9', 'score': 0.34}]
chr1	GH01I007912	7912676	7913652	0.77	[{'connected_gene': 'UTS2', 'score': 584.35}, {'connected_gene': 'TNFRSF9', 'score': 11.58}, {'connected_gene': 'VAMP3', 'score': 10.48}, {'connected_gene': 'PER3', 'score': 10.35}, {'connected_gene': 'SLC45A1', 'score': 9.43}, {'connected_gene': 'ENSG00000238290', 'score': 8.86}, {'connected_gene': 'ENSG00000236266', 'score': 0.17}]
chr1	GH01I007703	7703724	7706031	1.47	[{'connected_gene': 'LOC105376689', 'score': 550.77}, {'connected_gene': 'PER3', 'score': 17.02}, {'connected_gene': 'ENSG00000270171', 'score': 11.42}, {'connected_gene': 'VAMP3', 'score': 11.01}, {'connected_gene': 'SLC45A1', 'score': 10.49}, {'connected_gene': 'ENSG00000236266', 'score': 10.2}, {'connected_gene': 'TNFRSF9', 'score': 10.07}, {'connected_gene': 'CAMTA1', 'score': 5.63}]
chr1	GH01I008011	8010995	8011503	0.43	[{'connected_gene': 'GC01P008012', 'score': 550.77}, {'connected_gene': 'SLC45A1', 'score': 11.28}, {'connected_gene': 'PARK7', 'score': 11.04}, {'connected_gene': 'TNFRSF9', 'score': 10.41}, {'connected_gene': 'ENSG00000284716', 'score': 0.39}, {'connected_gene': 'ERRFI1', 'score': 0.37}]
chr1	GH01I007940	7940001	7943200	1.63	[{'connected_gene': 'GC01P007941', 'score': 550.77}, {'connected_gene': 'TNFRSF9', 'score': 550.77}, {'connected_gene': 'ENSG00000270330', 'score': 550.77}, {'connected_gene': 'UTS2', 'score': 17.85}, {'connected_gene': 'RERE', 'score': 9.68}, {'connected_gene': 'LOC100129776', 'score': 4.57}]
chr1	GH01I007948	7948982	7949556	0.56	[{'connected_gene': 'GC01P007952', 'score': 0.77}, {'connected_gene': 'GC01P007941', 'score': 0.44}, {'connected_gene': 'TNFRSF9', 'score': 0.44}]
chr1	GH01I008126	8126602	8128404	1.19	[{'connected_gene': 'ENSG00000238290', 'score': 10.94}, {'connected_gene': 'PARK7', 'score': 5.64}, {'connected_gene': 'VAMP3', 'score': 1.76}, {'connected_gene': 'TNFRSF9', 'score': 1.55}, {'connected_gene': 'LOC100129776', 'score': 0.21}, {'connected_gene': 'RPL7AP18', 'score': 0.2}]
chr1	GH01I007993	7993156	7994944	1.38	[{'connected_gene': 'ENSG00000238290', 'score': 41.3}, {'connected_gene': 'PARK7', 'score': 11.6}, {'connected_gene': 'ERRFI1', 'score': 11.51}, {'connected_gene': 'SLC45A1', 'score': 10.89}, {'connected_gene': 'TNFRSF9', 'score': 10.38}, {'connected_gene': 'PER3', 'score': 9.07}, {'connected_gene': 'VAMP3', 'score': 8.8}, {'connected_gene': 'ENSG00000284747', 'score': 0.77}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}]
chr1	GH01I007991	7991225	7992943	0.52	[{'connected_gene': 'ENSG00000284747', 'score': 550.77}, {'connected_gene': 'ENSG00000238290', 'score': 17.77}, {'connected_gene': 'PARK7', 'score': 11.6}, {'connected_gene': 'ERRFI1', 'score': 11.51}, {'connected_gene': 'SLC45A1', 'score': 10.89}, {'connected_gene': 'TNFRSF9', 'score': 10.4}, {'connected_gene': 'PER3', 'score': 9.07}, {'connected_gene': 'VAMP3', 'score': 8.8}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}]
chr1	GH01I008002	8002830	8007092	1.44	[{'connected_gene': 'ENSG00000238290', 'score': 41.21}, {'connected_gene': 'PARK7', 'score': 30.08}, {'connected_gene': 'ERRFI1', 'score': 11.36}, {'connected_gene': 'SLC45A1', 'score': 11.28}, {'connected_gene': 'LINC01714', 'score': 10.59}, {'connected_gene': 'RNU1-7P', 'score': 10.59}, {'connected_gene': 'TNFRSF9', 'score': 10.42}, {'connected_gene': 'UTS2', 'score': 9.6}, {'connected_gene': 'PER3', 'score': 9.39}, {'connected_gene': 'GC01P008012', 'score': 0.44}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}, {'connected_gene': 'ENSG00000284747', 'score': 0.39}]
chr1	GH01I007929	7929606	7931819	0.64	[{'connected_gene': 'PIR36767', 'score': 550.77}, {'connected_gene': 'PARK7', 'score': 25.24}, {'connected_gene': 'UTS2', 'score': 16.03}, {'connected_gene': 'VAMP3', 'score': 10.32}, {'connected_gene': 'SLC45A1', 'score': 9.48}, {'connected_gene': 'GC01P007941', 'score': 0.39}, {'connected_gene': 'TNFRSF9', 'score': 0.39}]