PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000425708	[[44481261, 44490231], [44491004, 44491115], [44491938, 44492065], [44492359, 44492454], [44492805, 44492974], [44496612, 44497188], [44518967, 44519162]]	[[44488066, 44490231], [44491004, 44491115], [44491938, 44492065], [44492359, 44492454], [44492805, 44492974], [44496612, 44497041]]
ENST00000396077	[[44482405, 44490231], [44491004, 44491115], [44491938, 44492065], [44492359, 44492454], [44492805, 44492974], [44496612, 44497188], [44499735, 44499856], [44519082, 44519162]]	[[44488066, 44490231], [44491004, 44491115], [44491938, 44492065], [44492359, 44492454], [44492805, 44492974], [44496612, 44497041]]
ENST00000460529	[[44491614, 44492065], [44492359, 44492454], [44492805, 44492974], [44496612, 44497188], [44499735, 44499756]]	None
ENST00000474600	[[44496370, 44497188], [44519082, 44519141]]	None
NM_181489	[[44481261, 44490231], [44491004, 44491115], [44491938, 44492065], [44492359, 44492454], [44492805, 44492974], [44496612, 44497188], [44499735, 44499856], [44519082, 44519162]]	[[44488066, 44490231], [44491004, 44491115], [44491938, 44492065], [44492359, 44492454], [44492805, 44492974], [44496612, 44497041]]

Promoter

Chrom	Start	End	Description
chr3	44519131	44519186	CAGE_peak_1_at_ZNF445_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I045130	45130418	45141564	1.72	[{'connected_gene': 'ZNF502', 'score': 25.82}, {'connected_gene': 'ZNF852', 'score': 25.25}, {'connected_gene': 'RN7SL145P', 'score': 24.84}, {'connected_gene': 'ZNF35', 'score': 19.15}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'RNU5B-3P', 'score': 10.74}, {'connected_gene': 'CLEC3B', 'score': 10.71}, {'connected_gene': 'TMEM158', 'score': 10.51}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZDHHC3', 'score': 10.13}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'ENSG00000202268', 'score': 9.78}, {'connected_gene': 'CDCP1', 'score': 9.36}, {'connected_gene': 'LOC105377059', 'score': 0.2}]
chr3	GH03I045052	45052688	45066370	1.72	[{'connected_gene': 'ZNF502', 'score': 29.2}, {'connected_gene': 'ZNF852', 'score': 25.25}, {'connected_gene': 'RN7SL145P', 'score': 24.84}, {'connected_gene': 'CLEC3B', 'score': 19.26}, {'connected_gene': 'ZNF35', 'score': 19.16}, {'connected_gene': 'CDCP1', 'score': 16.37}, {'connected_gene': 'ZNF197', 'score': 15.66}, {'connected_gene': 'ZNF660', 'score': 15.3}, {'connected_gene': 'EXOSC7', 'score': 12.21}, {'connected_gene': 'RNU5B-3P', 'score': 11.07}, {'connected_gene': 'TMEM158', 'score': 10.63}, {'connected_gene': 'ENSG00000202268', 'score': 10.23}, {'connected_gene': 'ZDHHC3', 'score': 10.2}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'LIMD1', 'score': 9.48}, {'connected_gene': 'TMEM42', 'score': 6.46}, {'connected_gene': 'KIAA1143', 'score': 5.3}, {'connected_gene': 'ZNF501', 'score': 4.21}, {'connected_gene': 'LOC105377059', 'score': 0.44}]
chr3	GH03I045107	45107997	45108823	0.38	[{'connected_gene': 'ZNF502', 'score': 17.75}, {'connected_gene': 'RN7SL145P', 'score': 16.63}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'CDCP1', 'score': 0.28}, {'connected_gene': 'LOC105377059', 'score': 0.26}]
chr3	GH03I045103	45103514	45107225	1.45	[{'connected_gene': 'ZNF502', 'score': 17.76}, {'connected_gene': 'RN7SL145P', 'score': 16.63}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'TMEM158', 'score': 4.98}, {'connected_gene': 'CDCP1', 'score': 1.67}, {'connected_gene': 'LOC105377059', 'score': 0.28}]
chr3	GH03I044962	44962531	44970626	1.35	[{'connected_gene': 'TGM4', 'score': 16.63}, {'connected_gene': 'RN7SL145P', 'score': 12.33}, {'connected_gene': 'ZNF852', 'score': 11.62}, {'connected_gene': 'CLEC3B', 'score': 11.24}, {'connected_gene': 'ZNF445', 'score': 11.23}, {'connected_gene': 'LIMD1', 'score': 11.19}, {'connected_gene': 'EXOSC7', 'score': 10.83}, {'connected_gene': 'ENSG00000235845', 'score': 10.65}, {'connected_gene': 'ZNF502', 'score': 10.41}, {'connected_gene': 'RNU5B-3P', 'score': 10.06}, {'connected_gene': 'ZDHHC3', 'score': 0.44}, {'connected_gene': 'RPL12P44', 'score': 0.31}]
chr3	GH03I044611	44611083	44611373	0.24	[{'connected_gene': 'KIAA1143', 'score': 13.67}, {'connected_gene': 'ZNF197', 'score': 3.77}, {'connected_gene': 'ZNF660', 'score': 3.1}, {'connected_gene': 'ZKSCAN7', 'score': 2.34}, {'connected_gene': 'ZNF445', 'score': 1.85}, {'connected_gene': 'ZNF502', 'score': 1.81}, {'connected_gene': 'ZNF501', 'score': 1.64}, {'connected_gene': 'PIR39553', 'score': 0.39}, {'connected_gene': 'ENSG00000236869', 'score': 0.19}]
chr3	GH03I043584	43584149	43584600	1.12	[{'connected_gene': 'NKTR', 'score': 24.97}, {'connected_gene': 'ZNF662', 'score': 21.2}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'SNRK-AS1', 'score': 11.24}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'RPL18AP9', 'score': 0.15}, {'connected_gene': 'TUBAP3', 'score': 0.15}, {'connected_gene': 'ANO10', 'score': 0.14}, {'connected_gene': 'GC03M043165', 'score': 0.05}]
chr3	GH03I043522	43522560	43523894	0.93	[{'connected_gene': 'NKTR', 'score': 24.98}, {'connected_gene': 'ZNF662', 'score': 21.2}, {'connected_gene': 'SNRK-AS1', 'score': 14.87}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'RPL18AP9', 'score': 0.28}, {'connected_gene': 'ANO10', 'score': 0.1}, {'connected_gene': 'TUBAP3', 'score': 0.1}, {'connected_gene': 'GC03M043165', 'score': 0.05}]
chr3	GH03I045109	45109175	45111267	1.12	[{'connected_gene': 'ZNF445', 'score': 4.68}, {'connected_gene': 'CDCP1', 'score': 0.28}, {'connected_gene': 'LOC105377059', 'score': 0.26}]
chr3	GH03I044451	44451158	44452236	0.2	[{'connected_gene': 'ZNF445', 'score': 11.77}, {'connected_gene': 'ZNF852', 'score': 11.35}, {'connected_gene': 'GC03M044441', 'score': 0.44}]
chr3	GH03I044359	44359065	44360434	0.92	[{'connected_gene': 'ZNF445', 'score': 9.38}, {'connected_gene': 'ZNF197', 'score': 8.44}, {'connected_gene': 'TMEM42', 'score': 5.37}, {'connected_gene': 'LOC105377055', 'score': 0.34}, {'connected_gene': 'TCAIM', 'score': 0.34}, {'connected_gene': 'LINC01988', 'score': 0.21}]
chr3	GH03I044233	44233079	44238725	1.17	[{'connected_gene': 'ZNF660', 'score': 39.63}, {'connected_gene': 'ZNF502', 'score': 20.16}, {'connected_gene': 'ZNF197', 'score': 19.44}, {'connected_gene': 'ZKSCAN7', 'score': 12.54}, {'connected_gene': 'ZNF445', 'score': 11.38}, {'connected_gene': 'ZNF852', 'score': 10.59}, {'connected_gene': 'RNU6-367P', 'score': 9.97}, {'connected_gene': 'ZNF35', 'score': 9.79}, {'connected_gene': 'SNRK-AS1', 'score': 9.72}, {'connected_gene': 'MIR138-1', 'score': 9.49}, {'connected_gene': 'TCAIM', 'score': 7.76}, {'connected_gene': 'ENSG00000271941', 'score': 5.94}, {'connected_gene': 'TOPAZ1', 'score': 0.44}, {'connected_gene': 'PIR53341', 'score': 0.13}]
chr3	GH03I044613	44613081	44613382	0.24	[{'connected_gene': 'ZNF660', 'score': 3.95}, {'connected_gene': 'ZNF445', 'score': 3.39}, {'connected_gene': 'ZKSCAN7', 'score': 2.85}, {'connected_gene': 'ZNF197', 'score': 2.56}, {'connected_gene': 'ZNF501', 'score': 1.76}, {'connected_gene': 'PIR39553', 'score': 0.44}, {'connected_gene': 'ENSG00000236869', 'score': 0.19}]
chr3	GH03I044355	44355055	44356400	1.02	[{'connected_gene': 'ZNF660', 'score': 45.06}, {'connected_gene': 'ZNF445', 'score': 10.84}, {'connected_gene': 'ZNF197', 'score': 8.93}, {'connected_gene': 'LOC105377055', 'score': 0.37}, {'connected_gene': 'TCAIM', 'score': 0.37}, {'connected_gene': 'LINC01988', 'score': 0.2}]
chr3	GH03I044341	44341787	44343000	0.58	[{'connected_gene': 'ZNF660', 'score': 42.5}, {'connected_gene': 'ZNF852', 'score': 10.52}, {'connected_gene': 'ZNF445', 'score': 10.11}, {'connected_gene': 'ZKSCAN7', 'score': 9.36}, {'connected_gene': 'ZNF197', 'score': 8.43}, {'connected_gene': 'TCAIM', 'score': 0.77}, {'connected_gene': 'LOC105377055', 'score': 0.77}, {'connected_gene': 'LINC01988', 'score': 0.18}]
chr3	GH03I044468	44468572	44469582	1.03	[{'connected_gene': 'ZNF660', 'score': 45.99}, {'connected_gene': 'ZNF197', 'score': 16.47}, {'connected_gene': 'ZNF445', 'score': 0.44}, {'connected_gene': 'GC03M044441', 'score': 0.34}]
chr3	GH03I043767	43767725	43771957	1.75	[{'connected_gene': 'ZNF852', 'score': 19.44}, {'connected_gene': 'SNRK-AS1', 'score': 11.14}, {'connected_gene': 'ZNF445', 'score': 10.07}, {'connected_gene': 'ZNF662', 'score': 10.03}, {'connected_gene': 'ENSG00000235886', 'score': 0.39}, {'connected_gene': 'LOC105377054', 'score': 0.39}, {'connected_gene': 'GC03M043165', 'score': 0.08}]
chr3	GH03I044337	44337275	44340862	2.09	[{'connected_gene': 'TCAIM', 'score': 550.77}, {'connected_gene': 'LOC105377055', 'score': 550.77}, {'connected_gene': 'ZNF660', 'score': 44.39}, {'connected_gene': 'ZNF852', 'score': 15.31}, {'connected_gene': 'ZNF35', 'score': 13.14}, {'connected_gene': 'SNRK-AS1', 'score': 12.19}, {'connected_gene': 'ZNF445', 'score': 10.74}, {'connected_gene': 'ZNF197', 'score': 7.35}, {'connected_gene': 'ENSG00000271941', 'score': 5.94}, {'connected_gene': 'ZNF502', 'score': 4.87}, {'connected_gene': 'LINC01988', 'score': 0.17}]
chr3	GH03I044974	44974043	44977602	2.21	[{'connected_gene': 'EXOSC7', 'score': 566.38}, {'connected_gene': 'ZDHHC3', 'score': 554.91}, {'connected_gene': 'ZNF445', 'score': 16.55}, {'connected_gene': 'RN7SL145P', 'score': 14.75}, {'connected_gene': 'CLEC3B', 'score': 11.34}, {'connected_gene': 'ZNF502', 'score': 11.08}, {'connected_gene': 'ZKSCAN7', 'score': 10.78}, {'connected_gene': 'ZNF852', 'score': 10.5}, {'connected_gene': 'RNU5B-3P', 'score': 9.69}, {'connected_gene': 'KIAA1143', 'score': 9.3}, {'connected_gene': 'ZNF197', 'score': 6.24}]
chr3	GH03I043734	43734722	43739342	1.12	[{'connected_gene': 'RNU6-367P', 'score': 10.26}, {'connected_gene': 'ZNF445', 'score': 4.72}, {'connected_gene': 'PIR40588', 'score': 0.39}, {'connected_gene': 'LOC105377054', 'score': 0.34}, {'connected_gene': 'GC03M043165', 'score': 0.07}]
chr3	GH03I045117	45117655	45128322	1.63	[{'connected_gene': 'RN7SL145P', 'score': 33.45}, {'connected_gene': 'ZNF852', 'score': 31.56}, {'connected_gene': 'LIMD1', 'score': 20.77}, {'connected_gene': 'ZNF502', 'score': 20.45}, {'connected_gene': 'ZNF445', 'score': 18.34}, {'connected_gene': 'TMEM158', 'score': 17.84}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'FYCO1', 'score': 12.84}, {'connected_gene': 'CDCP1', 'score': 12.82}, {'connected_gene': 'RNU5B-3P', 'score': 10.33}, {'connected_gene': 'CLEC3B', 'score': 10.32}, {'connected_gene': 'XCR1', 'score': 10.29}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ENSG00000202268', 'score': 9.66}, {'connected_gene': 'LOC105377059', 'score': 0.23}]
chr3	GH03I044438	44438419	44441955	1.49	[{'connected_gene': 'LINC00694', 'score': 550.77}, {'connected_gene': 'ZNF660', 'score': 48.66}, {'connected_gene': 'ZNF197', 'score': 25.29}, {'connected_gene': 'ZNF852', 'score': 22.6}, {'connected_gene': 'ZNF502', 'score': 17.77}, {'connected_gene': 'ZNF445', 'score': 10.22}, {'connected_gene': 'ZNF35', 'score': 10.13}, {'connected_gene': 'GC03M044441', 'score': 0.44}]
chr3	GH03I044476	44476010	44478273	1.89	[{'connected_gene': 'LOC101928529', 'score': 550.77}, {'connected_gene': 'ZNF445', 'score': 550.77}, {'connected_gene': 'GC03M044441', 'score': 0.29}]
chr3	GH03I044532	44532929	44533078	0.99	[{'connected_gene': 'ZNF197', 'score': 24.83}, {'connected_gene': 'ZNF852', 'score': 12.13}, {'connected_gene': 'ZKSCAN7', 'score': 11.23}, {'connected_gene': 'ENSG00000235845', 'score': 10.51}, {'connected_gene': 'TGM4', 'score': 10.51}, {'connected_gene': 'ZNF445', 'score': 10.46}, {'connected_gene': 'ZNF660', 'score': 10.35}, {'connected_gene': 'ZNF501', 'score': 10.05}, {'connected_gene': 'CLEC3B', 'score': 9.82}, {'connected_gene': 'RNU5B-3P', 'score': 9.81}, {'connected_gene': 'ZNF35', 'score': 9.64}, {'connected_gene': 'KIAA1143', 'score': 6.39}, {'connected_gene': 'LOC100419748', 'score': 0.77}]
chr3	GH03I044442	44442092	44443475	0.43	[{'connected_gene': 'ZNF197', 'score': 5.94}, {'connected_gene': 'GC03M044441', 'score': 0.77}, {'connected_gene': 'LINC00694', 'score': 0.77}, {'connected_gene': 'ZNF445', 'score': 0.29}]
chr3	GH03I044624	44624201	44626393	2.02	[{'connected_gene': 'ZNF197', 'score': 584.76}, {'connected_gene': 'ZNF197-AS1', 'score': 550.77}, {'connected_gene': 'ZNF35', 'score': 21.81}, {'connected_gene': 'ZNF852', 'score': 21.56}, {'connected_gene': 'KIAA1143', 'score': 14.13}, {'connected_gene': 'ZNF660', 'score': 11.28}, {'connected_gene': 'ZDHHC3', 'score': 10.08}, {'connected_gene': 'ZNF502', 'score': 10.05}, {'connected_gene': 'ZNF445', 'score': 10.0}, {'connected_gene': 'ENSG00000236869', 'score': 0.21}]
chr3	GH03I044602	44602478	44602731	0.22	[{'connected_gene': 'ZNF197-AS1', 'score': 11.74}, {'connected_gene': 'ZNF445', 'score': 11.57}, {'connected_gene': 'ZKSCAN7', 'score': 10.52}, {'connected_gene': 'ZNF501', 'score': 9.77}, {'connected_gene': 'ZNF660', 'score': 2.28}, {'connected_gene': 'ZNF35', 'score': 2.14}, {'connected_gene': 'ZNF197', 'score': 1.54}, {'connected_gene': 'PIR39553', 'score': 0.37}, {'connected_gene': 'ENSG00000236869', 'score': 0.18}]
chr3	GH03I043685	43685888	43688788	0.93	[{'connected_gene': 'TUBAP3', 'score': 550.77}, {'connected_gene': 'ZNF662', 'score': 21.2}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SNRK-AS1', 'score': 11.22}, {'connected_gene': 'ZNF35', 'score': 10.08}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'ABHD5', 'score': 4.91}, {'connected_gene': 'ENSG00000261786', 'score': 4.34}, {'connected_gene': 'ANO10', 'score': 0.77}, {'connected_gene': 'RPL18AP9', 'score': 0.08}, {'connected_gene': 'GC03M043165', 'score': 0.06}]
chr3	GH03I044435	44435425	44436593	0.49	[{'connected_gene': 'PIR57313', 'score': 0.77}, {'connected_gene': 'LINC00694', 'score': 0.77}, {'connected_gene': 'ZNF445', 'score': 0.26}]
chr3	GH03I044445	44445115	44446028	0.2	[{'connected_gene': 'GC03M044441', 'score': 550.77}, {'connected_gene': 'LINC00694', 'score': 0.44}, {'connected_gene': 'ZNF445', 'score': 0.29}]
chr3	GH03I044685	44685000	44686200	1.26	[{'connected_gene': 'ENSG00000236869', 'score': 550.77}, {'connected_gene': 'LOC101928592', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 24.18}, {'connected_gene': 'ZNF35', 'score': 21.76}, {'connected_gene': 'KIAA1143', 'score': 15.25}, {'connected_gene': 'ZNF852', 'score': 13.11}, {'connected_gene': 'KIF15', 'score': 11.25}, {'connected_gene': 'ZNF501', 'score': 11.14}, {'connected_gene': 'ZNF660', 'score': 10.61}, {'connected_gene': 'ZNF502', 'score': 10.19}, {'connected_gene': 'ZKSCAN7', 'score': 10.17}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'ZNF445', 'score': 8.93}, {'connected_gene': 'PIR62310', 'score': 0.77}]
chr3	GH03I044444	44444001	44444815	0.2	[{'connected_gene': 'GC03M044441', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 14.76}, {'connected_gene': 'LINC00694', 'score': 0.77}, {'connected_gene': 'ZNF445', 'score': 0.29}]