PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000254801	[[71521257, 71522256], [71522927, 71523008], [71527808, 71527932], [71532143, 71532377]]	[[71522045, 71522256], [71522927, 71523008], [71527808, 71527932], [71532143, 71532207]]
ENST00000510437	[[71522036, 71522256], [71522927, 71523008], [71527808, 71527932], [71532143, 71532231], [71532565, 71532692]]	[[71522045, 71522256], [71522927, 71523008], [71527808, 71527932], [71532143, 71532207]]
ENST00000543780	[[71522045, 71522256], [71522927, 71523008], [71527808, 71527932], [71529818, 71529866], [71532143, 71532207]]	[[71522045, 71522256], [71522927, 71523008], [71527808, 71527932], [71529818, 71529866], [71532143, 71532207]]
ENST00000510614	[[71522079, 71522256], [71522927, 71523008], [71527808, 71527932], [71531576, 71531603], [71532143, 71532231], [71532565, 71532601]]	[[71522079, 71522256], [71522927, 71523008], [71527808, 71527932], [71531576, 71531603], [71532143, 71532207]]
ENST00000391614	[[71522101, 71522256], [71522927, 71523008], [71527808, 71527932], [71529818, 71529866], [71532143, 71532243]]	[[71522101, 71522256], [71522927, 71523008], [71527808, 71527932], [71529818, 71529866], [71532143, 71532207]]
ENST00000470866	[[71522985, 71523008], [71527808, 71527932], [71532143, 71532231], [71547494, 71547534]]	[[71522985, 71523008], [71527808, 71527932], [71532143, 71532207]]
NM_144646	[[71521257, 71522256], [71522927, 71523008], [71527808, 71527932], [71532143, 71532348]]	[[71522045, 71522256], [71522927, 71523008], [71527808, 71527932], [71532143, 71532207]]

Promoter

Chrom	Start	End	Description
chr4	71532209	71532244	CAGE_peak_1_at_IGJ_5end
chr4	71532273	71532287	CAGE_peak_2_at_IGJ_5end
chr4	71532339	71532348	CAGE_peak_3_at_IGJ_5end
chr4	71532616	71532662	CAGE_peak_5_at_IGJ_5end
chr4	71532668	71532695	CAGE_peak_4_at_IGJ_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I070947	70947201	70947800	0.2	[{'connected_gene': 'MOB1B', 'score': 12.2}, {'connected_gene': 'UTP3', 'score': 10.05}, {'connected_gene': 'JCHAIN', 'score': 10.04}, {'connected_gene': 'DCK', 'score': 4.36}]
chr4	GH04I070948	70948801	70949000	0.31	[{'connected_gene': 'MOB1B', 'score': 12.2}, {'connected_gene': 'UTP3', 'score': 10.05}, {'connected_gene': 'JCHAIN', 'score': 10.04}, {'connected_gene': 'DCK', 'score': 0.26}]
chr4	GH04I070938	70938257	70938316	0.76	[{'connected_gene': 'MOB1B', 'score': 550.28}, {'connected_gene': 'GRSF1', 'score': 11.12}, {'connected_gene': 'JCHAIN', 'score': 10.22}, {'connected_gene': 'DCK', 'score': 0.23}]
chr4	GH04I070901	70901526	70904540	2.36	[{'connected_gene': 'MOB1B', 'score': 567.62}, {'connected_gene': 'DCK', 'score': 11.9}, {'connected_gene': 'GRSF1', 'score': 11.85}, {'connected_gene': 'UTP3', 'score': 10.35}, {'connected_gene': 'JCHAIN', 'score': 10.35}]
chr4	GH04I070721	70721344	70723203	1.88	[{'connected_gene': 'RUFY3', 'score': 563.9}, {'connected_gene': 'UTP3', 'score': 11.44}, {'connected_gene': 'JCHAIN', 'score': 11.4}, {'connected_gene': 'ENSG00000272986', 'score': 0.37}, {'connected_gene': 'PIR34937', 'score': 0.26}]
chr4	GH04I070733	70733285	70738078	2.28	[{'connected_gene': 'RUFY3', 'score': 576.96}, {'connected_gene': 'RNU6-784P', 'score': 13.43}, {'connected_gene': 'RNU6-520P', 'score': 13.43}, {'connected_gene': 'UTP3', 'score': 11.24}, {'connected_gene': 'JCHAIN', 'score': 11.23}, {'connected_gene': 'PIR34937', 'score': 0.31}, {'connected_gene': 'ENSG00000272986', 'score': 0.29}]
chr4	GH04I070927	70927023	70928233	0.79	[{'connected_gene': 'UTP3', 'score': 10.59}, {'connected_gene': 'JCHAIN', 'score': 10.59}, {'connected_gene': 'MOB1B', 'score': 6.33}, {'connected_gene': 'DCK', 'score': 0.21}]
chr4	GH04I070723	70723801	70724000	0.38	[{'connected_gene': 'UTP3', 'score': 11.42}, {'connected_gene': 'JCHAIN', 'score': 11.4}, {'connected_gene': 'RUFY3', 'score': 0.37}, {'connected_gene': 'ENSG00000272986', 'score': 0.37}, {'connected_gene': 'PIR34937', 'score': 0.28}]
chr4	GH04I070740	70740063	70741182	0.49	[{'connected_gene': 'UTP3', 'score': 11.05}, {'connected_gene': 'JCHAIN', 'score': 11.04}, {'connected_gene': 'PIR34937', 'score': 0.34}, {'connected_gene': 'RUFY3', 'score': 0.28}, {'connected_gene': 'ENSG00000272986', 'score': 0.28}]
chr4	GH04I070738	70738778	70739882	0.59	[{'connected_gene': 'UTP3', 'score': 11.05}, {'connected_gene': 'JCHAIN', 'score': 11.04}, {'connected_gene': 'PIR34937', 'score': 0.34}, {'connected_gene': 'ENSG00000272986', 'score': 0.29}, {'connected_gene': 'RUFY3', 'score': 0.28}]
chr4	GH04I070769	70769190	70769440	0.2	[{'connected_gene': 'UTP3', 'score': 10.82}, {'connected_gene': 'JCHAIN', 'score': 10.81}, {'connected_gene': 'PIR34937', 'score': 0.44}, {'connected_gene': 'RUFY3', 'score': 0.2}, {'connected_gene': 'GC04P070840', 'score': 0.19}]
chr4	GH04I071008	71008317	71009075	0.2	[{'connected_gene': 'UTP3', 'score': 11.0}, {'connected_gene': 'JCHAIN', 'score': 11.0}, {'connected_gene': 'DCK', 'score': 5.05}, {'connected_gene': 'MOB1B', 'score': 0.14}, {'connected_gene': 'GC04M071034', 'score': 0.1}]
chr4	GH04I071003	71003259	71007942	0.88	[{'connected_gene': 'UTP3', 'score': 11.0}, {'connected_gene': 'JCHAIN', 'score': 11.0}, {'connected_gene': 'DCK', 'score': 4.57}, {'connected_gene': 'RUFY3', 'score': 4.48}, {'connected_gene': 'MOB1B', 'score': 0.15}, {'connected_gene': 'GC04M071034', 'score': 0.1}]
chr4	GH04I071025	71025565	71026879	0.66	[{'connected_gene': 'UTP3', 'score': 10.23}, {'connected_gene': 'JCHAIN', 'score': 10.22}, {'connected_gene': 'DCK', 'score': 4.98}, {'connected_gene': 'GC04M071034', 'score': 0.12}]
chr4	GH04I071184	71184344	71184473	0.7	[{'connected_gene': 'JCHAIN', 'score': 9.11}, {'connected_gene': 'SLC4A4', 'score': 0.77}, {'connected_gene': 'GC04M071034', 'score': 0.34}]
chr4	GH04I070957	70957887	70959530	0.2	[{'connected_gene': 'JCHAIN', 'score': 10.18}, {'connected_gene': 'UTP3', 'score': 10.18}, {'connected_gene': 'DCK', 'score': 6.2}, {'connected_gene': 'RUFY3', 'score': 5.72}, {'connected_gene': 'MOB1B', 'score': 0.22}]
chr4	GH04I070759	70759134	70759800	0.49	[{'connected_gene': 'JCHAIN', 'score': 10.75}, {'connected_gene': 'UTP3', 'score': 10.55}, {'connected_gene': 'DCK', 'score': 5.61}, {'connected_gene': 'PIR34937', 'score': 0.77}, {'connected_gene': 'ENSG00000272986', 'score': 0.23}, {'connected_gene': 'RUFY3', 'score': 0.22}]
chr4	GH04I071067	71067484	71067613	0.8	[{'connected_gene': 'JCHAIN', 'score': 10.12}, {'connected_gene': 'UTP3', 'score': 9.63}, {'connected_gene': 'DCK', 'score': 0.18}, {'connected_gene': 'GC04M071034', 'score': 0.16}]
chr4	GH04I070613	70613601	70614200	0.59	[{'connected_gene': 'JCHAIN', 'score': 10.42}, {'connected_gene': 'UTP3', 'score': 10.29}, {'connected_gene': 'ENAM', 'score': 0.39}, {'connected_gene': 'AMBN', 'score': 0.34}]
chr4	GH04I070637	70637244	70637804	0.46	[{'connected_gene': 'JCHAIN', 'score': 11.19}, {'connected_gene': 'UTP3', 'score': 11.02}, {'connected_gene': 'ENAM', 'score': 0.44}, {'connected_gene': 'LOC101927297', 'score': 0.26}]
chr4	GH04I070652	70652001	70652200	0.52	[{'connected_gene': 'JCHAIN', 'score': 11.98}, {'connected_gene': 'UTP3', 'score': 11.82}, {'connected_gene': 'ENAM', 'score': 0.34}, {'connected_gene': 'LOC101927297', 'score': 0.31}]
chr4	GH04I070754	70754119	70755631	0.86	[{'connected_gene': 'JCHAIN', 'score': 11.19}, {'connected_gene': 'DCK', 'score': 5.91}, {'connected_gene': 'PIR34937', 'score': 0.44}, {'connected_gene': 'RUFY3', 'score': 0.23}, {'connected_gene': 'ENSG00000272986', 'score': 0.23}]
chr4	GH04I070682	70682864	70683553	0.2	[{'connected_gene': 'JCHAIN', 'score': 550.77}, {'connected_gene': 'LOC101927297', 'score': 0.77}, {'connected_gene': 'UTP3', 'score': 0.44}, {'connected_gene': 'ENAM', 'score': 0.23}]
chr4	GH04I070666	70666619	70666678	0.93	[{'connected_gene': 'JCHAIN', 'score': 550.37}, {'connected_gene': 'LOC101927297', 'score': 0.39}, {'connected_gene': 'ENAM', 'score': 0.28}]
chr4	GH04I070836	70836827	70840640	2.01	[{'connected_gene': 'GRSF1', 'score': 550.77}, {'connected_gene': 'GC04P070840', 'score': 550.77}, {'connected_gene': 'UTP3', 'score': 10.1}, {'connected_gene': 'JCHAIN', 'score': 10.1}, {'connected_gene': 'RUFY3', 'score': 8.35}, {'connected_gene': 'DCK', 'score': 5.96}, {'connected_gene': 'PIR34937', 'score': 0.18}]
chr4	GH04I070837	70836282	70836341	0.73	[{'connected_gene': 'GRSF1', 'score': 550.44}, {'connected_gene': 'UTP3', 'score': 10.11}, {'connected_gene': 'JCHAIN', 'score': 10.1}, {'connected_gene': 'GC04P070840', 'score': 0.77}, {'connected_gene': 'PIR34937', 'score': 0.19}]
chr4	GH04I070992	70992159	70998319	2.53	[{'connected_gene': 'DCK', 'score': 559.06}, {'connected_gene': 'RUFY3', 'score': 5.16}, {'connected_gene': 'MOB1B', 'score': 4.77}, {'connected_gene': 'JCHAIN', 'score': 3.75}, {'connected_gene': 'GC04M071034', 'score': 0.1}]
chr4	GH04I070969	70969833	70972006	0.8	[{'connected_gene': 'DCK', 'score': 19.44}, {'connected_gene': 'RUFY3', 'score': 12.17}, {'connected_gene': 'GRSF1', 'score': 11.48}, {'connected_gene': 'JCHAIN', 'score': 10.93}, {'connected_gene': 'UTP3', 'score': 10.93}, {'connected_gene': 'MOB1B', 'score': 0.2}]
chr4	GH04I070742	70742401	70742600	0.4	[{'connected_gene': 'RNU6-784P', 'score': 11.98}, {'connected_gene': 'RUFY3', 'score': 11.98}, {'connected_gene': 'RNU6-520P', 'score': 11.96}, {'connected_gene': 'UTP3', 'score': 10.45}, {'connected_gene': 'JCHAIN', 'score': 10.43}, {'connected_gene': 'PIR34937', 'score': 0.34}, {'connected_gene': 'ENSG00000272986', 'score': 0.28}]
chr4	GH04I070673	70673523	70674224	0.2	[{'connected_gene': 'LOC101927297', 'score': 0.77}, {'connected_gene': 'JCHAIN', 'score': 0.44}, {'connected_gene': 'ENAM', 'score': 0.25}]
chr4	GH04I070671	70671908	70672729	0.2	[{'connected_gene': 'LOC101927297', 'score': 0.44}, {'connected_gene': 'JCHAIN', 'score': 0.44}, {'connected_gene': 'ENAM', 'score': 0.26}]
chr4	GH04I070678	70677953	70679133	1.14	[{'connected_gene': 'LOC101927297', 'score': 550.77}, {'connected_gene': 'ENAM', 'score': 10.8}, {'connected_gene': 'JCHAIN', 'score': 6.86}, {'connected_gene': 'DCK', 'score': 2.9}]
chr4	GH04I070677	70677400	70677601	0.51	[{'connected_gene': 'LOC101927297', 'score': 550.77}, {'connected_gene': 'ENAM', 'score': 10.8}, {'connected_gene': 'JCHAIN', 'score': 0.77}]