PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000295666	[[57896938, 57897502], [57898591, 57898718], [57899360, 57899477], [57906989, 57907099], [57976042, 57976551]]	[[57897482, 57897502], [57898591, 57898718], [57899360, 57899477], [57906989, 57907099], [57976042, 57976517]]
ENST00000537922	[[57898203, 57898718], [57899360, 57899477], [57906989, 57907099], [57976042, 57976551]]	[[57898580, 57898718], [57899360, 57899477], [57906989, 57907099], [57976042, 57976517]]
ENST00000512512	[[57896938, 57897502], [57898591, 57898718], [57899360, 57899477], [57906989, 57907099], [57931654, 57931769]]	None
ENST00000514062	[[57898203, 57898718], [57899360, 57899477], [57906989, 57907101]]	None
NM_001553	[[57897236, 57897502], [57898591, 57898718], [57899360, 57899477], [57906989, 57907099], [57976042, 57976551]]	[[57897482, 57897502], [57898591, 57898718], [57899360, 57899477], [57906989, 57907099], [57976042, 57976517]]
NM_001253835	[[57898403, 57898718], [57899360, 57899477], [57906989, 57907099], [57976042, 57976551]]	[[57898580, 57898718], [57899360, 57899477], [57906989, 57907099], [57976042, 57976517]]

Promoter

Chrom	Start	End	Description
chr4	57976544	57976560	CAGE_peak_1_at_IGFBP7_5end
chr4	57976573	57976582	CAGE_peak_2_at_IGFBP7_5end
chr4	57976588	57976589	CAGE_peak_3_at_IGFBP7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I057048	57048735	57049001	0.6	[{'connected_gene': 'NOA1', 'score': 4.73}, {'connected_gene': 'UBE2CP3', 'score': 0.34}, {'connected_gene': 'RNU6-998P', 'score': 0.25}, {'connected_gene': 'IGFBP7', 'score': 0.21}]
chr4	GH04I057100	57100721	57100826	0.4	[{'connected_gene': 'POLR2B', 'score': 9.91}, {'connected_gene': 'NOA1', 'score': 9.91}, {'connected_gene': 'IGFBP7-AS1', 'score': 0.44}, {'connected_gene': 'IGFBP7', 'score': 0.44}, {'connected_gene': 'UBE2CP3', 'score': 0.31}]
chr4	GH04I057101	57101132	57105850	1.2	[{'connected_gene': 'POLR2B', 'score': 9.91}, {'connected_gene': 'NOA1', 'score': 9.91}, {'connected_gene': 'IGFBP7-AS1', 'score': 9.48}, {'connected_gene': 'IGFBP7', 'score': 7.27}, {'connected_gene': 'UBE2CP3', 'score': 0.29}]
chr4	GH04I057073	57073633	57084542	1.53	[{'connected_gene': 'IGFBP7', 'score': 21.7}, {'connected_gene': 'IGFBP7-AS1', 'score': 18.41}, {'connected_gene': 'RNU6-998P', 'score': 10.25}, {'connected_gene': 'UBE2CP3', 'score': 0.44}]
chr4	GH04I057084	57084913	57087449	0.31	[{'connected_gene': 'IGFBP7', 'score': 20.08}, {'connected_gene': 'IGFBP7-AS1', 'score': 12.9}, {'connected_gene': 'UBE2CP3', 'score': 0.39}]
chr4	GH04I057136	57136179	57137795	0.31	[{'connected_gene': 'IGFBP7', 'score': 18.6}, {'connected_gene': 'IGFBP7-AS1', 'score': 17.56}, {'connected_gene': 'GC04P057130', 'score': 0.44}, {'connected_gene': 'ENSG00000250192', 'score': 0.37}]
chr4	GH04I057115	57115095	57115244	0.31	[{'connected_gene': 'IGFBP7', 'score': 0.77}, {'connected_gene': 'IGFBP7-AS1', 'score': 0.44}, {'connected_gene': 'GC04P057130', 'score': 0.39}]
chr4	GH04I057059	57059971	57066910	1.1	[{'connected_gene': 'IGFBP7', 'score': 7.25}, {'connected_gene': 'ENSG00000269949', 'score': 6.71}, {'connected_gene': 'UBE2CP3', 'score': 0.44}, {'connected_gene': 'RNU6-998P', 'score': 0.21}]
chr4	GH04I057049	57049264	57050158	0.2	[{'connected_gene': 'IGFBP7', 'score': 5.4}, {'connected_gene': 'UBE2CP3', 'score': 0.34}, {'connected_gene': 'RNU6-998P', 'score': 0.25}]
chr4	GH04I057148	57148195	57149475	0.43	[{'connected_gene': 'IGFBP7-AS1', 'score': 12.05}, {'connected_gene': 'IGFBP7', 'score': 12.05}, {'connected_gene': 'SPINK2', 'score': 4.15}, {'connected_gene': 'ENSG00000250192', 'score': 0.44}, {'connected_gene': 'GC04P057130', 'score': 0.37}]
chr4	GH04I057163	57163155	57164764	1.07	[{'connected_gene': 'IGFBP7-AS1', 'score': 11.8}, {'connected_gene': 'IGFBP7', 'score': 11.8}, {'connected_gene': 'RNU6-998P', 'score': 9.64}, {'connected_gene': 'ENSG00000250192', 'score': 0.44}, {'connected_gene': 'GC04P057230', 'score': 0.2}]
chr4	GH04I057106	57106050	57106779	0.2	[{'connected_gene': 'IGFBP7-AS1', 'score': 0.77}, {'connected_gene': 'IGFBP7', 'score': 0.77}, {'connected_gene': 'UBE2CP3', 'score': 0.29}]
chr4	GH04I057087	57087508	57088108	0.2	[{'connected_gene': 'IGFBP7-AS1', 'score': 12.9}, {'connected_gene': 'IGFBP7', 'score': 12.9}, {'connected_gene': 'UBE2CP3', 'score': 0.37}]
chr4	GH04I057131	57131962	57132598	0.4	[{'connected_gene': 'IGFBP7-AS1', 'score': 12.06}, {'connected_gene': 'IGFBP7', 'score': 12.06}, {'connected_gene': 'GC04P057130', 'score': 0.77}, {'connected_gene': 'ENSG00000250192', 'score': 0.34}]
chr4	GH04I057107	57107001	57112640	2.13	[{'connected_gene': 'IGFBP7-AS1', 'score': 560.86}, {'connected_gene': 'IGFBP7', 'score': 557.46}]
chr4	GH04I057118	57118164	57120367	1.33	[{'connected_gene': 'IGFBP7-AS1', 'score': 10.19}, {'connected_gene': 'IGFBP7', 'score': 2.43}, {'connected_gene': 'GC04P057130', 'score': 0.39}]
chr4	GH04I057090	57090001	57090844	0.78	[{'connected_gene': 'RNU6-998P', 'score': 9.62}, {'connected_gene': 'POLR2B', 'score': 9.61}, {'connected_gene': 'NOA1', 'score': 9.61}, {'connected_gene': 'IGFBP7', 'score': 5.11}, {'connected_gene': 'IGFBP7-AS1', 'score': 0.37}, {'connected_gene': 'UBE2CP3', 'score': 0.37}]
chr4	GH04I057093	57093986	57096846	0.94	[{'connected_gene': 'RNU6-998P', 'score': 10.34}, {'connected_gene': 'POLR2B', 'score': 9.6}, {'connected_gene': 'NOA1', 'score': 9.6}, {'connected_gene': 'IGFBP7-AS1', 'score': 7.41}, {'connected_gene': 'IGFBP7', 'score': 0.39}, {'connected_gene': 'UBE2CP3', 'score': 0.34}]
chr4	GH04I057091	57091072	57092087	0.2	[{'connected_gene': 'RNU6-998P', 'score': 9.62}, {'connected_gene': 'POLR2B', 'score': 9.61}, {'connected_gene': 'NOA1', 'score': 9.61}, {'connected_gene': 'IGFBP7-AS1', 'score': 0.37}, {'connected_gene': 'IGFBP7', 'score': 0.37}, {'connected_gene': 'UBE2CP3', 'score': 0.37}]
chr4	GH04I057097	57097799	57100431	0.94	[{'connected_gene': 'RNU6-998P', 'score': 10.33}, {'connected_gene': 'POLR2B', 'score': 9.91}, {'connected_gene': 'NOA1', 'score': 9.91}, {'connected_gene': 'IGFBP7-AS1', 'score': 0.39}, {'connected_gene': 'IGFBP7', 'score': 0.39}, {'connected_gene': 'UBE2CP3', 'score': 0.31}]
chr4	GH04I057098	57097160	57097552	0.2	[{'connected_gene': 'RNU6-998P', 'score': 10.34}, {'connected_gene': 'IGFBP7', 'score': 5.74}, {'connected_gene': 'IGFBP7-AS1', 'score': 0.39}, {'connected_gene': 'UBE2CP3', 'score': 0.34}]
chr4	GH04I057068	57068401	57069400	0.69	[{'connected_gene': 'RNU6-998P', 'score': 10.61}, {'connected_gene': 'IGFBP7', 'score': 6.07}, {'connected_gene': 'UBE2CP3', 'score': 0.77}]
chr4	GH04I057042	57041530	57047216	0.92	[{'connected_gene': 'RNU6-998P', 'score': 11.05}, {'connected_gene': 'ENSG00000269949', 'score': 6.15}, {'connected_gene': 'IGFBP7', 'score': 5.46}, {'connected_gene': 'UBE2CP3', 'score': 0.31}]
chr4	GH04I057050	57050523	57056868	0.89	[{'connected_gene': 'RNU6-998P', 'score': 10.56}, {'connected_gene': 'IGFBP7', 'score': 7.06}, {'connected_gene': 'ENSG00000269949', 'score': 5.65}, {'connected_gene': 'UBE2CP3', 'score': 0.37}]
chr4	GH04I057070	57070494	57071863	0.78	[{'connected_gene': 'UBE2CP3', 'score': 550.77}, {'connected_gene': 'IGFBP7', 'score': 18.87}, {'connected_gene': 'IGFBP7-AS1', 'score': 16.83}, {'connected_gene': 'RNU6-998P', 'score': 10.55}]
chr4	GH04I057072	57072325	57073395	0.43	[{'connected_gene': 'UBE2CP3', 'score': 550.77}, {'connected_gene': 'IGFBP7', 'score': 18.24}, {'connected_gene': 'IGFBP7-AS1', 'score': 16.82}]
chr4	GH04I057037	57037249	57038836	0.63	[{'connected_gene': 'ENSG00000269949', 'score': 21.76}, {'connected_gene': 'RNU6-998P', 'score': 11.65}, {'connected_gene': 'NOA1', 'score': 11.58}, {'connected_gene': 'POLR2B', 'score': 11.56}, {'connected_gene': 'UBE2CP3', 'score': 0.29}, {'connected_gene': 'IGFBP7', 'score': 0.19}]
chr4	GH04I057038	57038914	57041140	0.46	[{'connected_gene': 'ENSG00000269949', 'score': 14.64}, {'connected_gene': 'RNU6-998P', 'score': 10.79}, {'connected_gene': 'NOA1', 'score': 7.93}, {'connected_gene': 'UBE2CP3', 'score': 0.29}, {'connected_gene': 'IGFBP7', 'score': 0.19}]
chr4	GH04I057034	57034271	57036133	0.38	[{'connected_gene': 'ENSG00000269949', 'score': 22.25}, {'connected_gene': 'RNU6-998P', 'score': 11.66}, {'connected_gene': 'POLR2B', 'score': 11.58}, {'connected_gene': 'NOA1', 'score': 11.58}, {'connected_gene': 'UBE2CP3', 'score': 0.28}, {'connected_gene': 'IGFBP7', 'score': 0.18}]
chr4	GH04I057041	57041384	57041444	0.4	[{'connected_gene': 'ENSG00000269949', 'score': 12.65}, {'connected_gene': 'RNU6-998P', 'score': 11.06}, {'connected_gene': 'UBE2CP3', 'score': 0.29}, {'connected_gene': 'IGFBP7', 'score': 0.2}]
chr4	GH04I057057	57057249	57058066	0.4	[{'connected_gene': 'ENSG00000269949', 'score': 4.85}, {'connected_gene': 'UBE2CP3', 'score': 0.39}, {'connected_gene': 'IGFBP7', 'score': 0.23}, {'connected_gene': 'RNU6-998P', 'score': 0.23}]