PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000383693	[[100120036, 100121283], [100148540, 100148729], [100170562, 100170793], [100174620, 100175163]]	[[100148573, 100148729], [100170562, 100170793], [100174620, 100174770]]
ENST00000466996	[[100120375, 100121283], [100148540, 100148729], [100170579, 100170793], [100174620, 100175032]]	[[100148573, 100148729], [100170579, 100170594]]
ENST00000489752	[[100120454, 100121283], [100148540, 100148729], [100170523, 100170793], [100174620, 100175145]]	[[100148573, 100148729], [100170523, 100170793], [100174620, 100174770]]
NM_001085451	[[100120036, 100121283], [100148540, 100148729], [100170562, 100170793], [100174620, 100175170]]	[[100148573, 100148729], [100170562, 100170793], [100174620, 100174770]]

Promoter

Chrom	Start	End	Description
chr3	100120375	100120431	CAGE_peak_1_at_LNP1_5end
chr3	100120441	100120453	CAGE_peak_5_at_LNP1_5end
chr3	100120462	100120481	CAGE_peak_4_at_LNP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I100386	100386013	100387465	0.73	[{'connected_gene': 'TOMM70', 'score': 9.33}, {'connected_gene': 'LNP1', 'score': 0.39}, {'connected_gene': 'NIT2', 'score': 0.23}]
chr3	GH03I100608	100608852	100616052	1.47	[{'connected_gene': 'ADGRG7', 'score': 550.77}, {'connected_gene': 'TFG', 'score': 16.39}, {'connected_gene': 'ENSG00000252989', 'score': 11.27}, {'connected_gene': 'TOMM70', 'score': 5.81}, {'connected_gene': 'TMEM45A', 'score': 5.01}, {'connected_gene': 'LNP1', 'score': 4.8}, {'connected_gene': 'GC03M100588', 'score': 0.37}]
chr3	GH03I100309	100309248	100309631	0.22	[{'connected_gene': 'NIT2', 'score': 11.94}, {'connected_gene': 'TBC1D23', 'score': 11.91}, {'connected_gene': 'LNP1', 'score': 10.82}, {'connected_gene': 'TOMM70', 'score': 10.82}, {'connected_gene': 'TFG', 'score': 9.79}]
chr3	GH03I100333	100333694	100337095	1.99	[{'connected_gene': 'NIT2', 'score': 563.51}, {'connected_gene': 'LNP1', 'score': 31.32}, {'connected_gene': 'TOMM70', 'score': 18.25}, {'connected_gene': 'TBC1D23', 'score': 16.69}]
chr3	GH03I100359	100359139	100359354	0.25	[{'connected_gene': 'NIT2', 'score': 12.08}, {'connected_gene': 'LNP1', 'score': 11.49}, {'connected_gene': 'TOMM70', 'score': 11.49}, {'connected_gene': 'FILIP1L', 'score': 1.21}]
chr3	GH03I100360	100360335	100360578	0.22	[{'connected_gene': 'NIT2', 'score': 12.05}, {'connected_gene': 'LNP1', 'score': 11.49}, {'connected_gene': 'TOMM70', 'score': 11.49}]
chr3	GH03I100352	100352264	100353388	0.52	[{'connected_gene': 'NIT2', 'score': 0.37}, {'connected_gene': 'LNP1', 'score': 0.25}]
chr3	GH03I100424	100424966	100425986	0.59	[{'connected_gene': 'TBC1D23', 'score': 4.39}, {'connected_gene': 'PIR48705', 'score': 0.34}, {'connected_gene': 'LNP1', 'score': 0.34}, {'connected_gene': 'GC03P100464', 'score': 0.28}]
chr3	GH03I100553	100553393	100555934	0.59	[{'connected_gene': 'TMEM45A', 'score': 13.3}, {'connected_gene': 'LNP1', 'score': 10.05}, {'connected_gene': 'TOMM70', 'score': 10.05}, {'connected_gene': 'GC03P100561', 'score': 0.44}, {'connected_gene': 'GC03P100533', 'score': 0.34}]
chr3	GH03I100556	100556450	100557468	0.66	[{'connected_gene': 'TMEM45A', 'score': 11.29}, {'connected_gene': 'LNP1', 'score': 10.05}, {'connected_gene': 'TOMM70', 'score': 10.05}, {'connected_gene': 'GC03P100561', 'score': 0.77}, {'connected_gene': 'GC03P100533', 'score': 0.34}]
chr3	GH03I100395	100395368	100397200	0.6	[{'connected_gene': 'LNP1', 'score': 20.82}, {'connected_gene': 'TOMM70', 'score': 0.44}, {'connected_gene': 'NIT2', 'score': 0.21}]
chr3	GH03I100369	100369585	100369858	0.24	[{'connected_gene': 'LNP1', 'score': 11.07}, {'connected_gene': 'TOMM70', 'score': 11.07}, {'connected_gene': 'NIT2', 'score': 0.28}]
chr3	GH03I100398	100398001	100398200	0.2	[{'connected_gene': 'LNP1', 'score': 0.77}, {'connected_gene': 'TOMM70', 'score': 0.77}, {'connected_gene': 'NIT2', 'score': 0.21}]
chr3	GH03I100399	100399390	100404289	2.07	[{'connected_gene': 'LNP1', 'score': 570.83}, {'connected_gene': 'TOMM70', 'score': 558.51}, {'connected_gene': 'PIR48705', 'score': 550.77}, {'connected_gene': 'TBC1D23', 'score': 11.06}, {'connected_gene': 'TFG', 'score': 9.84}, {'connected_gene': 'GC03P100464', 'score': 0.21}]
chr3	GH03I100316	100316657	100316846	0.67	[{'connected_gene': 'LNP1', 'score': 10.59}, {'connected_gene': 'TOMM70', 'score': 10.59}, {'connected_gene': 'TFG', 'score': 10.31}, {'connected_gene': 'TBC1D23', 'score': 7.37}, {'connected_gene': 'NIT2', 'score': 0.37}]
chr3	GH03I100781	100781797	100784233	0.43	[{'connected_gene': 'LNP1', 'score': 7.08}, {'connected_gene': 'GC03P100791', 'score': 0.44}, {'connected_gene': 'GC03P100766', 'score': 0.37}, {'connected_gene': 'ABI3BP', 'score': 0.08}]
chr3	GH03I100810	100810823	100810986	0.38	[{'connected_gene': 'LNP1', 'score': 6.3}, {'connected_gene': 'GC03P100818', 'score': 0.44}, {'connected_gene': 'GC03P100791', 'score': 0.37}, {'connected_gene': 'ABI3BP', 'score': 0.09}]
chr3	GH03I099750	99750657	99754126	0.85	[{'connected_gene': 'FILIP1L', 'score': 12.54}, {'connected_gene': 'LNP1', 'score': 5.01}, {'connected_gene': 'TMEM45A', 'score': 4.49}, {'connected_gene': 'PIR47462', 'score': 0.39}, {'connected_gene': 'GC03P099792', 'score': 0.28}, {'connected_gene': 'COL8A1', 'score': 0.14}]
chr3	GH03I101009	101009359	101011495	0.38	[{'connected_gene': 'RNU6-865P', 'score': 10.94}, {'connected_gene': 'ABI3BP', 'score': 6.06}, {'connected_gene': 'LNP1', 'score': 4.89}, {'connected_gene': 'GC03M101028', 'score': 0.34}]
chr3	GH03I100639	100639888	100642774	1.21	[{'connected_gene': 'TFG', 'score': 15.53}, {'connected_gene': 'ADGRG7', 'score': 11.19}, {'connected_gene': 'TMEM45A', 'score': 5.61}, {'connected_gene': 'LNP1', 'score': 4.07}, {'connected_gene': 'ENSG00000252989', 'score': 0.77}, {'connected_gene': 'GC03M100588', 'score': 0.39}]
chr3	GH03I100634	100634595	100637404	1.29	[{'connected_gene': 'TFG', 'score': 7.61}, {'connected_gene': 'TMEM45A', 'score': 5.89}, {'connected_gene': 'LNP1', 'score': 4.29}, {'connected_gene': 'GC03M100588', 'score': 0.44}, {'connected_gene': 'ENSG00000252989', 'score': 0.39}, {'connected_gene': 'ADGRG7', 'score': 0.31}]
chr3	GH03I100591	100591089	100592181	0.69	[{'connected_gene': 'TFG', 'score': 18.35}, {'connected_gene': 'LNP1', 'score': 10.96}, {'connected_gene': 'TOMM70', 'score': 10.96}, {'connected_gene': 'TMEM45A', 'score': 7.45}, {'connected_gene': 'GC03P100589', 'score': 0.77}, {'connected_gene': 'ADGRG7', 'score': 0.37}, {'connected_gene': 'GC03M100588', 'score': 0.28}]
chr3	GH03I100681	100681008	100683899	0.59	[{'connected_gene': 'TFG', 'score': 18.31}, {'connected_gene': 'ENSG00000252989', 'score': 11.58}, {'connected_gene': 'LNP1', 'score': 9.32}, {'connected_gene': 'TMEM45A', 'score': 4.58}, {'connected_gene': 'GMFBP1', 'score': 0.37}, {'connected_gene': 'ADGRG7', 'score': 0.19}]
chr3	GH03I100706	100706709	100706864	0.38	[{'connected_gene': 'TFG', 'score': 9.02}, {'connected_gene': 'LNP1', 'score': 8.21}, {'connected_gene': 'GMFBP1', 'score': 0.26}]
chr3	GH03I100707	100707367	100711329	2	[{'connected_gene': 'TFG', 'score': 560.28}, {'connected_gene': 'LNP1', 'score': 8.22}, {'connected_gene': 'GC03M100717', 'score': 0.39}]
chr3	GH03I100154	100154679	100156311	0.38	[{'connected_gene': 'GC03P100154', 'score': 550.77}, {'connected_gene': 'TMEM30CP', 'score': 11.33}, {'connected_gene': 'LNP1', 'score': 4.41}, {'connected_gene': 'LOC105374009', 'score': 0.77}, {'connected_gene': 'CMSS1', 'score': 0.05}]
chr3	GH03I100590	100590401	100590959	1.11	[{'connected_gene': 'GC03P100589', 'score': 550.77}, {'connected_gene': 'LNP1', 'score': 10.34}, {'connected_gene': 'TOMM70', 'score': 10.34}, {'connected_gene': 'TMEM45A', 'score': 7.45}, {'connected_gene': 'ADGRG7', 'score': 0.37}, {'connected_gene': 'GC03M100588', 'score': 0.28}]
chr3	GH03I100438	100438017	100438166	0.31	[{'connected_gene': 'GC03P100464', 'score': 0.31}, {'connected_gene': 'PIR48705', 'score': 0.28}, {'connected_gene': 'LNP1', 'score': 0.28}]
chr3	GH03I100696	100696437	100699565	0.71	[{'connected_gene': 'ENSG00000252989', 'score': 10.27}, {'connected_gene': 'TFG', 'score': 8.44}, {'connected_gene': 'LNP1', 'score': 8.31}, {'connected_gene': 'ADGRG7', 'score': 8.13}, {'connected_gene': 'GMFBP1', 'score': 0.29}]