PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000512560	[[79275583, 79279617], [79281393, 79281482], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286059], [79286980, 79287068]]	[[79279506, 79279617], [79281393, 79281482], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286027]]
ENST00000509852	[[79278722, 79279617], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286059], [79286416, 79286486], [79286980, 79287082]]	[[79279609, 79279617], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286059], [79286416, 79286486], [79286980, 79287061]]
ENST00000512528	[[79279186, 79279617], [79281393, 79281482], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286059], [79286416, 79286486], [79286980, 79287082]]	[[79279506, 79279617], [79281393, 79281482], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286059], [79286416, 79286486], [79286980, 79287061]]
NM_001010891	[[79272538, 79279617], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286059], [79286416, 79286486], [79286980, 79287088]]	[[79279609, 79279617], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286059], [79286416, 79286486], [79286980, 79287061]]
NM_001167741	[[79272538, 79279617], [79281393, 79281482], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286059], [79286980, 79287088]]	[[79279506, 79279617], [79281393, 79281482], [79282772, 79282930], [79284061, 79284138], [79284284, 79284467], [79284974, 79285067], [79285982, 79286027]]

Promoter

Chrom	Start	End	Description
chr5	79276384	79276388	CAGE_peak_4_at_MTX3_5end
chr5	79286883	79286944	CAGE_peak_2_at_MTX3_5end
chr5	79287034	79287045	CAGE_peak_3_at_MTX3_5end
chr5	79287060	79287093	CAGE_peak_1_at_MTX3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I080124	80124463	80127599	1.58	[{'connected_gene': 'ZFYVE16', 'score': 18.53}, {'connected_gene': 'MTX3', 'score': 14.58}, {'connected_gene': 'JMY', 'score': 10.24}, {'connected_gene': 'SERINC5', 'score': 8.11}, {'connected_gene': 'FAM151B', 'score': 3.35}, {'connected_gene': 'ENSG00000251675', 'score': 0.77}, {'connected_gene': 'GC05P080097', 'score': 0.31}]
chr5	GH05I079511	79511200	79515400	2.11	[{'connected_gene': 'HOMER1', 'score': 550.77}, {'connected_gene': 'PAPD4', 'score': 16.67}, {'connected_gene': 'MTX3', 'score': 14.51}, {'connected_gene': 'JMY', 'score': 10.28}, {'connected_gene': 'GC05P079511', 'score': 0.77}]
chr5	GH05I079974	79974664	79975694	0.52	[{'connected_gene': 'THBS4', 'score': 37.7}, {'connected_gene': 'MTX3', 'score': 0.37}, {'connected_gene': 'LINC01455', 'score': 0.28}, {'connected_gene': 'LOC105379048', 'score': 0.13}]
chr5	GH05I079980	79980777	79981605	0.31	[{'connected_gene': 'THBS4', 'score': 39.75}, {'connected_gene': 'MTX3', 'score': 0.39}, {'connected_gene': 'LINC01455', 'score': 0.26}]
chr5	GH05I079962	79962921	79963221	0.52	[{'connected_gene': 'THBS4', 'score': 36.66}, {'connected_gene': 'LINC01455', 'score': 0.31}, {'connected_gene': 'MTX3', 'score': 0.31}, {'connected_gene': 'LOC105379048', 'score': 0.15}]
chr5	GH05I080035	80035299	80035358	0.61	[{'connected_gene': 'THBS4', 'score': 560.49}, {'connected_gene': 'CTD-2201I18.1', 'score': 10.47}, {'connected_gene': 'MTX3', 'score': 10.46}, {'connected_gene': 'ENSG00000251675', 'score': 9.35}, {'connected_gene': 'TRMT112P2', 'score': 0.77}]
chr5	GH05I079955	79955511	79957529	0.68	[{'connected_gene': 'THBS4', 'score': 38.25}, {'connected_gene': 'CTD-2201I18.1', 'score': 10.08}, {'connected_gene': 'LINC01455', 'score': 0.37}, {'connected_gene': 'MTX3', 'score': 0.29}, {'connected_gene': 'LOC105379048', 'score': 0.15}]
chr5	GH05I080959	80959121	80962239	1.92	[{'connected_gene': 'RASGRF2', 'score': 559.29}, {'connected_gene': 'RASGRF2-AS1', 'score': 550.77}, {'connected_gene': 'CKMT2-AS1', 'score': 11.9}, {'connected_gene': 'ENSG00000248794', 'score': 9.79}, {'connected_gene': 'MTX3', 'score': 9.72}, {'connected_gene': 'DHFR', 'score': 4.94}]
chr5	GH05I079989	79989912	79992019	2	[{'connected_gene': 'MTX3', 'score': 557.01}, {'connected_gene': 'THBS4', 'score': 550.77}, {'connected_gene': 'LINC01455', 'score': 0.23}]
chr5	GH05I079144	79144077	79144247	1.04	[{'connected_gene': 'MTX3', 'score': 12.39}, {'connected_gene': 'JMY', 'score': 11.93}, {'connected_gene': 'RNY3P1', 'score': 0.31}, {'connected_gene': 'GC05M079171', 'score': 0.31}, {'connected_gene': 'BHMT', 'score': 0.29}, {'connected_gene': 'DMGDH', 'score': 0.16}]
chr5	GH05I080251	80251315	80259062	2.46	[{'connected_gene': 'SERINC5', 'score': 550.77}, {'connected_gene': 'GC05P080257', 'score': 550.77}, {'connected_gene': 'PAPD4', 'score': 56.54}, {'connected_gene': 'RPS3AP20', 'score': 22.04}, {'connected_gene': 'MTX3', 'score': 12.0}, {'connected_gene': 'ENSG00000251675', 'score': 10.99}, {'connected_gene': 'CTD-2201I18.1', 'score': 10.3}, {'connected_gene': 'THBS4', 'score': 10.28}, {'connected_gene': 'DHFR', 'score': 5.27}, {'connected_gene': 'GC05P080258', 'score': 0.77}, {'connected_gene': 'GC05P080147', 'score': 0.14}]
chr5	GH05I079611	79611157	79614665	2.1	[{'connected_gene': 'PAPD4', 'score': 585.5}, {'connected_gene': 'RPS3AP20', 'score': 12.18}, {'connected_gene': 'MTX3', 'score': 11.59}, {'connected_gene': 'CRSP8P', 'score': 11.35}, {'connected_gene': 'GC05M079620', 'score': 0.44}]
chr5	GH05I079937	79937978	79939318	0.38	[{'connected_gene': 'LINC01455', 'score': 0.77}, {'connected_gene': 'MTX3', 'score': 0.23}, {'connected_gene': 'LOC105379048', 'score': 0.18}]
chr5	GH05I080487	80487108	80490800	2.01	[{'connected_gene': 'LOC105379049', 'score': 550.77}, {'connected_gene': 'FAM151B', 'score': 550.77}, {'connected_gene': 'ZCCHC9', 'score': 25.34}, {'connected_gene': 'PAPD4', 'score': 15.85}, {'connected_gene': 'CKMT2-AS1', 'score': 15.85}, {'connected_gene': 'MTX3', 'score': 10.47}, {'connected_gene': 'ZFYVE16', 'score': 6.07}, {'connected_gene': 'DHFR', 'score': 5.33}, {'connected_gene': 'RPS27AP9', 'score': 0.39}]
chr5	GH05I079801	79801001	79801400	0.72	[{'connected_gene': 'LOC102724557', 'score': 550.77}, {'connected_gene': 'ENSG00000250258', 'score': 18.58}, {'connected_gene': 'MTX3', 'score': 16.54}, {'connected_gene': 'PAPD4', 'score': 12.63}, {'connected_gene': 'RPS3AP20', 'score': 12.42}, {'connected_gene': 'JMY', 'score': 10.79}, {'connected_gene': 'CMYA5', 'score': 10.21}, {'connected_gene': 'GC05P079745', 'score': 0.22}]