PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000504853	[[110661851, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110678918, 110678939], [110681425, 110681536], [110681678, 110681792], [110682672, 110683747]]	None
ENST00000394635	[[110661851, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110678918, 110678939], [110679091, 110679115], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723207]]	[[110662048, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110678918, 110678939], [110679091, 110679115], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723127]]
ENST00000394634	[[110661851, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110678918, 110678939], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723335]]	[[110662048, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110678918, 110678939], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723127]]
ENST00000512148	[[110661879, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723141]]	[[110662048, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723127]]
ENST00000515512	[[110663031, 110663751], [110667377, 110667448]]	None
ENST00000510800	[[110685514, 110685846], [110687709, 110687980], [110723070, 110723134]]	[[110685688, 110685846], [110687709, 110687980], [110723070, 110723127]]
NM_001318057	[[110661847, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110678918, 110678939], [110679091, 110679115], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723381]]	[[110662048, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110678918, 110678939], [110679091, 110679115], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723127]]
NM_000204	[[110661847, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110678918, 110678939], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723381]]	[[110662048, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110678918, 110678939], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723127]]
NM_001331035	[[110661847, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723381]]	[[110662048, 110662266], [110663646, 110663751], [110667377, 110667658], [110670373, 110670477], [110670654, 110670758], [110673623, 110673659], [110681425, 110681536], [110681678, 110681792], [110682672, 110682848], [110685692, 110685846], [110687709, 110687980], [110723070, 110723127]]

Promoter

Chrom	Start	End	Description
chr4	110723142	110723181	CAGE_peak_1_at_CFI_5end
chr4	110723194	110723197	CAGE_peak_6_at_CFI_5end
chr4	110723224	110723236	CAGE_peak_4_at_CFI_5end
chr4	110723252	110723291	CAGE_peak_2_at_CFI_5end
chr4	110723298	110723312	CAGE_peak_3_at_CFI_5end
chr4	110723340	110723356	CAGE_peak_5_at_CFI_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I109713	109713066	109714911	0.31	[{'connected_gene': 'CASP6', 'score': 550.77}, {'connected_gene': 'GC04M109713', 'score': 550.77}, {'connected_gene': 'CFI', 'score': 11.64}, {'connected_gene': 'PLA2G12A', 'score': 0.37}]
chr4	GH04I109734	109734887	109737633	1.07	[{'connected_gene': 'PLA2G12A', 'score': 18.82}, {'connected_gene': 'CFI', 'score': 11.09}, {'connected_gene': 'GAR1', 'score': 9.84}]
chr4	GH04I109727	109727647	109731859	2.18	[{'connected_gene': 'PLA2G12A', 'score': 572.42}, {'connected_gene': 'SEC24B-AS1', 'score': 12.96}, {'connected_gene': 'CFI', 'score': 10.66}, {'connected_gene': 'GAR1', 'score': 10.19}, {'connected_gene': 'CASP6', 'score': 4.48}]
chr4	GH04I109548	109548081	109549518	0.93	[{'connected_gene': 'CFI', 'score': 10.51}, {'connected_gene': 'MCUB', 'score': 7.78}, {'connected_gene': 'RBMXP4', 'score': 7.17}, {'connected_gene': 'SEC24B', 'score': 1.45}, {'connected_gene': 'SETP20', 'score': 0.44}, {'connected_gene': 'MIR576', 'score': 0.21}]
chr4	GH04I109801	109801062	109803123	1.3	[{'connected_gene': 'CFI', 'score': 550.77}, {'connected_gene': 'LRIT3', 'score': 5.18}, {'connected_gene': 'GAR1', 'score': 5.1}, {'connected_gene': 'PLA2G12A', 'score': 0.19}]
chr4	GH04I109419	109419120	109420418	0.59	[{'connected_gene': 'CFI', 'score': 10.71}, {'connected_gene': 'RBMXP4', 'score': 4.48}, {'connected_gene': 'SEC24B-AS1', 'score': 0.39}, {'connected_gene': 'SEC24B', 'score': 0.39}, {'connected_gene': 'PIR37678', 'score': 0.34}]
chr4	GH04I109432	109432175	109435929	2	[{'connected_gene': 'SEC24B', 'score': 555.14}, {'connected_gene': 'SEC24B-AS1', 'score': 550.77}, {'connected_gene': 'RBMXP4', 'score': 11.71}, {'connected_gene': 'CFI', 'score': 10.57}, {'connected_gene': 'RN7SL55P', 'score': 0.37}]