PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000556826	[[58030639, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056231], [58060656, 58060842], [58332440, 58332780]]	[[58030852, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056231], [58060656, 58060842], [58332440, 58332543]]
ENST00000557430	[[58060762, 58060842], [58069115, 58069261], [58070760, 58070973], [58266129, 58266225]]	None
ENST00000556568	[[58070725, 58070973], [58448630, 58448912]]	None
ENST00000339762	[[58030639, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056231], [58060656, 58060842], [58063404, 58063615]]	[[58030852, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056231], [58060656, 58060842], [58063404, 58063615]]
ENST00000554729	[[58030695, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056228], [58060656, 58060842], [58063516, 58063615]]	[[58030852, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056151]]
ENST00000557254	[[58030856, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038733], [58046143, 58046232], [58047156, 58047257], [58047931, 58048151], [58055933, 58056231], [58060656, 58060842], [58062452, 58063615]]	[[58047239, 58047257], [58047931, 58048151], [58055933, 58056151]]
ENST00000556306	[[58036580, 58036698], [58038611, 58038737], [58047156, 58047257], [58047931, 58048053]]	[[58047239, 58047257], [58047931, 58048053]]
ENST00000554648	[[58443468, 58443675], [58448630, 58448781]]	None
NM_001306087	[[58030639, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056231], [58060656, 58060842], [58332440, 58332592]]	[[58030852, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056231], [58060656, 58060842], [58332440, 58332543]]
NM_001206920	[[58030639, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056228], [58060656, 58060842], [58332440, 58332592]]	[[58030852, 58031094], [58033192, 58033282], [58036505, 58036698], [58038611, 58038737], [58047931, 58048151], [58055933, 58056228], [58060656, 58060842], [58332440, 58332543]]

Promoter

Chrom	Start	End	Description
chr14	58332635	58332653	CAGE_peak_2_at_SLC35F4_5end
chr14	58332663	58332678	CAGE_peak_3_at_SLC35F4_5end
chr14	58332762	58332773	CAGE_peak_5_at_SLC35F4_5end
chr14	58332774	58332786	CAGE_peak_4_at_SLC35F4_5end
chr14	58332793	58332817	CAGE_peak_1_at_SLC35F4_5end
chr14	58448696	58448733	CAGE_peak_9_at_SLC35F4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I058426	58426145	58429744	2.3	[{'connected_gene': 'KIAA0586', 'score': 578.89}, {'connected_gene': 'TIMM9', 'score': 572.6}, {'connected_gene': 'GC14M058423', 'score': 550.77}, {'connected_gene': 'PSMA3-AS1', 'score': 31.23}, {'connected_gene': 'ENSG00000259969', 'score': 29.5}, {'connected_gene': 'ENSG00000258682', 'score': 28.75}, {'connected_gene': 'HMGB1P14', 'score': 22.92}, {'connected_gene': 'SLC35F4', 'score': 11.28}, {'connected_gene': 'ARID4A', 'score': 10.77}, {'connected_gene': 'RPL31P4', 'score': 10.61}, {'connected_gene': 'HNRNPCP1', 'score': 10.05}, {'connected_gene': 'RPL9P5', 'score': 6.16}, {'connected_gene': 'GC14P058442', 'score': 0.39}, {'connected_gene': 'ENSG00000258378', 'score': 0.31}, {'connected_gene': 'GC14P058345', 'score': 0.18}]
chr14	GH14I058104	58104883	58105032	0.75	[{'connected_gene': 'TOMM20L', 'score': 20.1}, {'connected_gene': 'ENSG00000259969', 'score': 11.88}, {'connected_gene': 'SLC35F4', 'score': 11.36}, {'connected_gene': 'RPL31P4', 'score': 10.08}, {'connected_gene': 'LOC440181', 'score': 9.8}, {'connected_gene': 'GC14M058071', 'score': 0.77}, {'connected_gene': 'GC14P058110', 'score': 0.44}, {'connected_gene': 'C14orf37', 'score': 0.08}]
chr14	GH14I057977	57977319	57977579	0.22	[{'connected_gene': 'SLC35F4', 'score': 8.25}, {'connected_gene': 'ACTR10', 'score': 1.37}, {'connected_gene': 'C14orf37', 'score': 1.35}, {'connected_gene': 'GC14M057931', 'score': 0.39}]
chr14	GH14I057760	57760270	57760649	0.22	[{'connected_gene': 'SLC35F4', 'score': 13.62}, {'connected_gene': 'NAA30', 'score': 2.76}, {'connected_gene': 'ACTR10', 'score': 1.76}, {'connected_gene': 'EXOC5', 'score': 1.61}, {'connected_gene': 'C14orf37', 'score': 1.51}, {'connected_gene': 'RN7SKP99', 'score': 0.18}, {'connected_gene': 'GC14M057656', 'score': 0.18}]
chr14	GH14I057866	57866040	57866099	0.84	[{'connected_gene': 'SLC35F4', 'score': 550.13}, {'connected_gene': 'RN7SKP99', 'score': 0.31}, {'connected_gene': 'GC14M057931', 'score': 0.15}]
chr14	GH14I057833	57832964	57834207	0.96	[{'connected_gene': 'SLC35F4', 'score': 28.94}, {'connected_gene': 'RN7SKP99', 'score': 0.77}, {'connected_gene': 'GC14M057656', 'score': 0.1}]
chr14	GH14I057944	57944803	57945625	0.38	[{'connected_gene': 'SLC35F4', 'score': 4.89}, {'connected_gene': 'GC14M057931', 'score': 0.34}, {'connected_gene': 'RN7SKP99', 'score': 0.14}]
chr14	GH14I057822	57822346	57824680	0.31	[{'connected_gene': 'SLC35F4', 'score': 36.91}, {'connected_gene': 'RN7SKP99', 'score': 0.39}, {'connected_gene': 'GC14M057656', 'score': 0.11}]
chr14	GH14I057845	57845146	57848717	0.51	[{'connected_gene': 'SLC35F4', 'score': 14.31}, {'connected_gene': 'RN7SKP99', 'score': 0.44}, {'connected_gene': 'GC14M057931', 'score': 0.13}]
chr14	GH14I057871	57871623	57871772	0.57	[{'connected_gene': 'RN7SKP99', 'score': 0.29}, {'connected_gene': 'GC14M057931', 'score': 0.16}, {'connected_gene': 'SLC35F4', 'score': 0.14}]
chr14	GH14I057832	57832123	57832272	0.4	[{'connected_gene': 'RN7SKP99', 'score': 0.44}, {'connected_gene': 'GC14M057656', 'score': 0.1}, {'connected_gene': 'SLC35F4', 'score': 0.1}]
chr14	GH14I057865	57865483	57865572	0.72	[{'connected_gene': 'ENSG00000258682', 'score': 16.4}, {'connected_gene': 'PSMA3-AS1', 'score': 14.31}, {'connected_gene': 'ARID4A', 'score': 13.05}, {'connected_gene': 'HMGB1P14', 'score': 10.4}, {'connected_gene': 'RN7SKP99', 'score': 0.31}, {'connected_gene': 'GC14M057931', 'score': 0.15}, {'connected_gene': 'SLC35F4', 'score': 0.13}]
chr14	GH14I057961	57961903	57963428	0.38	[{'connected_gene': 'GC14M057931', 'score': 0.77}, {'connected_gene': 'SLC35F4', 'score': 0.37}, {'connected_gene': 'RN7SKP99', 'score': 0.13}]
chr14	GH14I057725	57725783	57725972	0.46	[{'connected_gene': 'GC14M057656', 'score': 0.25}, {'connected_gene': 'RN7SKP99', 'score': 0.14}, {'connected_gene': 'SLC35F4', 'score': 0.07}]
chr14	GH14I057749	57749192	57749588	0.22	[{'connected_gene': 'GC14M057656', 'score': 0.19}, {'connected_gene': 'RN7SKP99', 'score': 0.17}, {'connected_gene': 'SLC35F4', 'score': 0.07}]
chr14	GH14I057714	57714199	57714977	0.71	[{'connected_gene': 'GC14M057656', 'score': 0.28}, {'connected_gene': 'RN7SKP99', 'score': 0.13}, {'connected_gene': 'SLC35F4', 'score': 0.06}]