PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
LINC01139	0	EGFR	5	affinity chromatography technology, unspecified method	Lin A (2016), Lin A (2016)	2
LINC01139	0	LRRK2	5	affinity chromatography technology, unspecified method	Lin A (2016), Lin A (2016)	2
EGFR	5	PTK6	1	affinity chromatography technology, unspecified method	Kamalati T (1996), Jones RB (2006)	2
LINC01139	0	PTK6	1	affinity chromatography technology, unspecified method	Lin A (2016), Lin A (2016)	2
LINC01139	0	GPNMB	1	affinity chromatography technology, unspecified method	Lin A (2016), Lin A (2016)	2
LINC01139	0	HIF1A	1	affinity chromatography technology, unspecified method	Lin A (2016), Lin A (2016)	2
LRRK2	5	HIF1A	1	enzymatic study	Lin A (2016)	1
PTK6	1	HIF1A	1	enzymatic study	Lin A (2016)	1
EGFR	5	GPNMB	1	enzymatic study	Lin A (2016)	1