PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000280606	[[31094745, 31095130], [31095439, 31095656], [31095878, 31096024], [31096100, 31096345], [31096430, 31096581], [31097284, 31097504], [31097657, 31097812], [31097953, 31098219], [31098857, 31099020], [31099126, 31099147], [31100072, 31100284]]	[[31095110, 31095130], [31095439, 31095656], [31095878, 31096024], [31096100, 31096345], [31096430, 31096581], [31097284, 31097504], [31097657, 31097812], [31097953, 31098219], [31098857, 31099020], [31099126, 31099147], [31100072, 31100130]]
ENST00000486499	[[31094757, 31096581], [31097284, 31100949]]	None
ENST00000492427	[[31097335, 31097504], [31097657, 31097812], [31097953, 31098219], [31098857, 31100049]]	None
NM_001039503	[[31094744, 31095130], [31095439, 31095656], [31095878, 31096024], [31096100, 31096345], [31096430, 31096581], [31097284, 31097504], [31097657, 31097812], [31097953, 31098219], [31098857, 31099020], [31099126, 31099147], [31100072, 31100130]]	[[31095110, 31095130], [31095439, 31095656], [31095878, 31096024], [31096100, 31096345], [31096430, 31096581], [31097284, 31097504], [31097657, 31097812], [31097953, 31098219], [31098857, 31099020], [31099126, 31099147], [31100072, 31100130]]

Promoter

Chrom	Start	End	Description
chr16	31106211	31106315	CAGE_peak_1_at_PRSS53_5end,CAGE_peak_2_at_VKORC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I031093	31092613	31096569	2.1	[{'connected_gene': 'VKORC1', 'score': 559.46}, {'connected_gene': 'ENSG00000280160', 'score': 550.77}, {'connected_gene': 'ENSG00000255439', 'score': 550.77}, {'connected_gene': 'SETD1A', 'score': 69.32}, {'connected_gene': 'ZNF785', 'score': 63.38}, {'connected_gene': 'ZNF720', 'score': 56.93}, {'connected_gene': 'FUS', 'score': 56.81}, {'connected_gene': 'ZNF689', 'score': 49.4}, {'connected_gene': 'SRCAP', 'score': 48.16}, {'connected_gene': 'ZNF747', 'score': 42.01}, {'connected_gene': 'ZNF764', 'score': 40.19}, {'connected_gene': 'C16orf58', 'score': 39.29}, {'connected_gene': 'NPIPB13', 'score': 35.64}, {'connected_gene': 'MIR762HG', 'score': 30.5}, {'connected_gene': 'KAT8', 'score': 30.28}, {'connected_gene': 'ZNF646', 'score': 29.08}, {'connected_gene': 'FBRS', 'score': 23.92}, {'connected_gene': 'ZNF688', 'score': 20.67}, {'connected_gene': 'ENSG00000260267', 'score': 19.81}, {'connected_gene': 'RNF40', 'score': 19.17}, {'connected_gene': 'ENSG00000262766', 'score': 19.01}, {'connected_gene': 'PRSS53', 'score': 14.06}, {'connected_gene': 'BCL7C', 'score': 12.2}, {'connected_gene': 'ENSG00000260304', 'score': 12.08}, {'connected_gene': 'ENSG00000261474', 'score': 11.86}, {'connected_gene': 'LOC730183', 'score': 10.98}, {'connected_gene': 'HSD3B7', 'score': 10.11}, {'connected_gene': 'ARMC5', 'score': 10.02}, {'connected_gene': 'ZNF629', 'score': 9.73}]
chr16	GH16I031090	31090576	31091397	0.56	[{'connected_gene': 'PRSS53', 'score': 550.77}, {'connected_gene': 'KAT8', 'score': 19.28}, {'connected_gene': 'ENSG00000255439', 'score': 0.77}, {'connected_gene': 'ENSG00000280160', 'score': 0.77}, {'connected_gene': 'VKORC1', 'score': 0.44}]
chr16	GH16I031088	31088953	31089012	0.76	[{'connected_gene': 'PRSS53', 'score': 550.77}, {'connected_gene': 'PIR60151', 'score': 0.77}, {'connected_gene': 'GC16P031249', 'score': 0.77}, {'connected_gene': 'ENSG00000255439', 'score': 0.44}]
chr16	GH16I030872	30872255	30877514	1.93	[{'connected_gene': 'MIR762HG', 'score': 563.42}, {'connected_gene': 'MIR4519', 'score': 550.77}, {'connected_gene': 'RNF40', 'score': 57.05}, {'connected_gene': 'INO80E', 'score': 50.99}, {'connected_gene': 'ENSG00000260267', 'score': 49.69}, {'connected_gene': 'SETD1A', 'score': 48.11}, {'connected_gene': 'FUS', 'score': 47.36}, {'connected_gene': 'BCL7C', 'score': 46.14}, {'connected_gene': 'FBRS', 'score': 39.32}, {'connected_gene': 'SRCAP', 'score': 37.51}, {'connected_gene': 'SMG1P5', 'score': 35.94}, {'connected_gene': 'PRR14', 'score': 33.52}, {'connected_gene': 'ZNF720', 'score': 29.0}, {'connected_gene': 'ZNF764', 'score': 25.74}, {'connected_gene': 'ENSG00000260304', 'score': 23.72}, {'connected_gene': 'SLX1A', 'score': 23.1}, {'connected_gene': 'ZNF646', 'score': 22.96}, {'connected_gene': 'CCDC189', 'score': 22.85}, {'connected_gene': 'ZNF629', 'score': 22.67}, {'connected_gene': 'ENSG00000260625', 'score': 22.4}, {'connected_gene': 'ZNF747', 'score': 21.9}, {'connected_gene': 'C16orf58', 'score': 21.57}, {'connected_gene': 'PPP4C', 'score': 20.21}, {'connected_gene': 'ENSG00000262766', 'score': 19.14}, {'connected_gene': 'HSD3B7', 'score': 19.05}, {'connected_gene': 'KAT8', 'score': 17.87}, {'connected_gene': 'ZNF785', 'score': 16.64}, {'connected_gene': 'ZNF771', 'score': 13.08}, {'connected_gene': 'STX4', 'score': 12.55}, {'connected_gene': 'CTF1', 'score': 12.3}, {'connected_gene': 'GDPD3', 'score': 11.59}, {'connected_gene': 'ZNF689', 'score': 11.51}, {'connected_gene': 'TGFB1I1', 'score': 11.28}, {'connected_gene': 'ENSG00000260114', 'score': 11.04}, {'connected_gene': 'LOC730183', 'score': 10.92}, {'connected_gene': 'ZNF688', 'score': 10.69}, {'connected_gene': 'TAOK2', 'score': 10.26}, {'connected_gene': 'ORAI3', 'score': 10.17}, {'connected_gene': 'NPIPB13', 'score': 10.1}, {'connected_gene': 'ENSG00000260911', 'score': 6.62}, {'connected_gene': 'PRSS53', 'score': 4.18}, {'connected_gene': 'PHKG2', 'score': 1.63}, {'connected_gene': 'ZNF668', 'score': 1.33}, {'connected_gene': 'ENSG00000262721', 'score': 0.34}, {'connected_gene': 'LOC647086', 'score': 0.23}]
chr16	GH16I031092	31092420	31092569	0.38	[{'connected_gene': 'ENSG00000280160', 'score': 550.77}, {'connected_gene': 'KAT8', 'score': 21.0}, {'connected_gene': 'VKORC1', 'score': 0.77}, {'connected_gene': 'PRSS53', 'score': 0.77}, {'connected_gene': 'ENSG00000255439', 'score': 0.77}]
chr16	GH16I031084	31084099	31088761	0.82	[{'connected_gene': 'PIR60151', 'score': 550.77}, {'connected_gene': 'GC16P031249', 'score': 550.77}, {'connected_gene': 'HSD3B7', 'score': 23.16}, {'connected_gene': 'ENSG00000260911', 'score': 19.56}, {'connected_gene': 'PRSS53', 'score': 7.46}, {'connected_gene': 'CD2BP2', 'score': 3.83}, {'connected_gene': 'ENSG00000255439', 'score': 0.44}, {'connected_gene': 'ZNF646', 'score': 0.39}]