PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371721	[[92500577, 92502285], [92503607, 92503705], [92508595, 92509351], [92616889, 92617671]]	[[92502238, 92502285], [92503607, 92503705], [92508595, 92509351], [92616889, 92617428]]
ENST00000277874	[[92500579, 92502285], [92508595, 92509351], [92616889, 92617455]]	[[92502242, 92502285], [92508595, 92509351], [92616889, 92617428]]
ENST00000336152	[[92500579, 92502285], [92503349, 92503447], [92508595, 92509351], [92616889, 92617455]]	[[92502238, 92502285], [92503349, 92503447], [92508595, 92509351], [92616889, 92617428]]
ENST00000371719	[[92500579, 92502285], [92508590, 92509351], [92616889, 92617455]]	[[92508591, 92509351], [92616889, 92617428]]
NM_019860	[[92500574, 92502285], [92508590, 92509351], [92616889, 92617671]]	[[92508591, 92509351], [92616889, 92617428]]
NM_019859	[[92500574, 92502285], [92503349, 92503447], [92508595, 92509351], [92616889, 92617671]]	[[92502238, 92502285], [92503349, 92503447], [92508595, 92509351], [92616889, 92617428]]
NM_000872	[[92500574, 92502285], [92508595, 92509351], [92616889, 92617671]]	[[92502242, 92502285], [92508595, 92509351], [92616889, 92617428]]

Promoter

Chrom	Start	End	Description
chr10	92617421	92617432	CAGE_peak_11_at_HTR7_5end
chr10	92617437	92617456	CAGE_peak_4_at_HTR7_5end
chr10	92617481	92617488	CAGE_peak_10_at_HTR7_5end
chr10	92617497	92617515	CAGE_peak_3_at_HTR7_5end
chr10	92617531	92617541	CAGE_peak_8_at_HTR7_5end
chr10	92617740	92617801	CAGE_peak_1_at_HTR7_5end
chr10	92618148	92618173	CAGE_peak_9_at_HTR7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I089887	89887166	89890867	0.77	[{'connected_gene': 'IFIT1', 'score': 6.27}, {'connected_gene': 'HTR7', 'score': 4.9}, {'connected_gene': 'LINC00865', 'score': 4.83}, {'connected_gene': 'LIPA', 'score': 4.48}, {'connected_gene': 'GC10M089924', 'score': 0.28}, {'connected_gene': 'PIR54261', 'score': 0.25}]
chr10	GH10I090923	90923994	90926230	0.52	[{'connected_gene': 'HTR7', 'score': 14.65}, {'connected_gene': 'HECTD2', 'score': 4.0}, {'connected_gene': 'RNU6-740P', 'score': 0.77}, {'connected_gene': 'GC10M090939', 'score': 0.23}]
chr10	GH10I090855	90855586	90860273	2.02	[{'connected_gene': 'HTR7', 'score': 559.88}, {'connected_gene': 'HECTD2', 'score': 4.12}, {'connected_gene': 'RPP30', 'score': 0.39}]
chr10	GH10I090911	90911184	90913273	1.17	[{'connected_gene': 'HTR7', 'score': 15.76}, {'connected_gene': 'RPP30', 'score': 10.87}, {'connected_gene': 'GC10M090914', 'score': 0.77}, {'connected_gene': 'ANKRD1', 'score': 0.44}, {'connected_gene': 'PIR41318', 'score': 0.39}]
chr10	GH10I090751	90751504	90751653	0.64	[{'connected_gene': 'HTR7', 'score': 17.62}, {'connected_gene': 'RPP30', 'score': 12.32}, {'connected_gene': 'GC10M090738', 'score': 0.39}, {'connected_gene': 'GC10M090739', 'score': 0.39}, {'connected_gene': 'GC10M090736', 'score': 0.39}, {'connected_gene': 'GC10M090737', 'score': 0.39}, {'connected_gene': 'PIR51660', 'score': 0.29}]
chr10	GH10I090908	90908506	90911157	0.31	[{'connected_gene': 'HTR7', 'score': 16.09}, {'connected_gene': 'RPP30', 'score': 10.89}, {'connected_gene': 'GC10M090914', 'score': 0.44}, {'connected_gene': 'PIR41318', 'score': 0.39}]
chr10	GH10I090741	90741681	90742252	0.38	[{'connected_gene': 'HTR7', 'score': 15.21}, {'connected_gene': 'RPP30', 'score': 10.83}, {'connected_gene': 'GC10M090738', 'score': 0.44}, {'connected_gene': 'GC10M090739', 'score': 0.44}, {'connected_gene': 'GC10M090736', 'score': 0.44}, {'connected_gene': 'GC10M090737', 'score': 0.44}, {'connected_gene': 'PIR51660', 'score': 0.26}]
chr10	GH10I090833	90833930	90835060	0.4	[{'connected_gene': 'HTR7', 'score': 18.8}, {'connected_gene': 'RPP30', 'score': 11.08}, {'connected_gene': 'PIR38191', 'score': 0.77}]
chr10	GH10I090602	90602622	90604012	0.2	[{'connected_gene': 'HTR7', 'score': 6.53}, {'connected_gene': 'LOC101926942', 'score': 4.66}, {'connected_gene': 'ENSG00000283053', 'score': 0.34}, {'connected_gene': 'GC10M090527', 'score': 0.23}]
chr10	GH10I090816	90816456	90818918	0.63	[{'connected_gene': 'HTR7', 'score': 19.53}, {'connected_gene': 'PIR38191', 'score': 0.39}, {'connected_gene': 'PIR51660', 'score': 0.29}]
chr10	GH10I090742	90742304	90742473	0.52	[{'connected_gene': 'HTR7', 'score': 10.99}, {'connected_gene': 'GC10M090738', 'score': 0.44}, {'connected_gene': 'GC10M090739', 'score': 0.44}, {'connected_gene': 'GC10M090736', 'score': 0.44}, {'connected_gene': 'GC10M090737', 'score': 0.44}, {'connected_gene': 'PIR51660', 'score': 0.26}]
chr10	GH10I090804	90804304	90804453	0.2	[{'connected_gene': 'HTR7', 'score': 4.41}, {'connected_gene': 'PIR51660', 'score': 0.37}, {'connected_gene': 'PIR38191', 'score': 0.31}]
chr10	GH10I090674	90674363	90676516	0.31	[{'connected_gene': 'HTR7', 'score': 4.27}, {'connected_gene': 'GC10M090644', 'score': 0.37}, {'connected_gene': 'GC10M090738', 'score': 0.21}, {'connected_gene': 'GC10M090739', 'score': 0.21}, {'connected_gene': 'GC10M090736', 'score': 0.21}, {'connected_gene': 'GC10M090737', 'score': 0.21}]
chr10	GH10I090813	90813142	90814501	0.2	[{'connected_gene': 'HTR7', 'score': 16.31}, {'connected_gene': 'PIR38191', 'score': 0.37}, {'connected_gene': 'PIR51660', 'score': 0.31}]
chr10	GH10I090822	90822564	90822713	0.31	[{'connected_gene': 'HECTD2', 'score': 12.15}, {'connected_gene': 'HTR7', 'score': 11.53}, {'connected_gene': 'RPP30', 'score': 11.32}, {'connected_gene': 'PIR38191', 'score': 0.44}, {'connected_gene': 'PIR51660', 'score': 0.28}]
chr10	GH10I090775	90775185	90776093	0.63	[{'connected_gene': 'RPP30', 'score': 11.27}, {'connected_gene': 'HTR7', 'score': 11.04}, {'connected_gene': 'PIR51660', 'score': 0.39}, {'connected_gene': 'GC10M090738', 'score': 0.28}, {'connected_gene': 'GC10M090739', 'score': 0.28}, {'connected_gene': 'GC10M090736', 'score': 0.28}, {'connected_gene': 'GC10M090737', 'score': 0.28}]
chr10	GH10I090846	90846298	90851322	0.86	[{'connected_gene': 'RPP30', 'score': 11.71}, {'connected_gene': 'HTR7', 'score': 10.51}, {'connected_gene': 'PIR38191', 'score': 0.37}]
chr10	GH10I090884	90884003	90886414	0.43	[{'connected_gene': 'PIR59702', 'score': 550.77}, {'connected_gene': 'HTR7', 'score': 10.76}, {'connected_gene': 'ANKRD1', 'score': 10.41}, {'connected_gene': 'RNU6-740P', 'score': 10.41}, {'connected_gene': 'PIR41318', 'score': 0.39}, {'connected_gene': 'RPP30', 'score': 0.39}]
chr10	GH10I090880	90880184	90880333	0.6	[{'connected_gene': 'ENSG00000222305', 'score': 550.77}, {'connected_gene': 'HTR7', 'score': 10.69}, {'connected_gene': 'PIR59702', 'score': 0.77}, {'connected_gene': 'RPP30', 'score': 0.44}]
chr10	GH10I090805	90805344	90805573	0.38	[{'connected_gene': 'PIR51660', 'score': 0.37}, {'connected_gene': 'PIR38191', 'score': 0.31}, {'connected_gene': 'HTR7', 'score': 0.23}]
chr10	GH10I090914	90914878	90922751	1.88	[{'connected_gene': 'GC10M090914', 'score': 550.77}, {'connected_gene': 'ANKRD1', 'score': 550.77}, {'connected_gene': 'HTR7', 'score': 6.43}, {'connected_gene': 'HECTD2', 'score': 4.69}, {'connected_gene': 'RNU6-740P', 'score': 0.77}]