PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000232003	[[186383740, 186384003], [186386723, 186386840], [186387726, 186387817], [186389411, 186389578], [186390575, 186390656], [186392877, 186392979], [186394835, 186396029]]	[[186383820, 186384003], [186386723, 186386840], [186387726, 186387817], [186389411, 186389578], [186390575, 186390656], [186392877, 186392979], [186394835, 186395672]]
ENST00000468154	[[186378004, 186378356], [186382880, 186383002], [186383862, 186383970]]	None
ENST00000495413	[[186386766, 186386840], [186387375, 186387817], [186389411, 186389578], [186390575, 186392979], [186394835, 186396020]]	None
NM_000412	[[186383740, 186384003], [186386723, 186386840], [186387726, 186387817], [186389411, 186389578], [186390575, 186390656], [186392877, 186392979], [186394835, 186396029]]	[[186383820, 186384003], [186386723, 186386840], [186387726, 186387817], [186389411, 186389578], [186390575, 186390656], [186392877, 186392979], [186394835, 186395672]]

Promoter

Chrom	Start	End	Description
chr3	186383792	186383809	CAGE_peak_1_at_HRG_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I187011	187011398	187014167	1.14	[{'connected_gene': 'ADIPOQ', 'score': 10.94}, {'connected_gene': 'ST6GAL1', 'score': 9.94}, {'connected_gene': 'HRG', 'score': 9.16}, {'connected_gene': 'GC03P186997', 'score': 0.37}, {'connected_gene': 'GC03P186996', 'score': 0.37}, {'connected_gene': 'PIR46786', 'score': 0.21}]
chr3	GH03I187014	187014653	187014802	0.4	[{'connected_gene': 'ADIPOQ', 'score': 10.94}, {'connected_gene': 'HRG', 'score': 9.16}, {'connected_gene': 'GC03P186997', 'score': 0.37}, {'connected_gene': 'GC03P186996', 'score': 0.37}, {'connected_gene': 'PIR46786', 'score': 0.21}, {'connected_gene': 'ST6GAL1', 'score': 0.18}]
chr3	GH03I187015	187015399	187018191	1.2	[{'connected_gene': 'ADIPOQ', 'score': 11.13}, {'connected_gene': 'ADIPOQ-AS1', 'score': 10.8}, {'connected_gene': 'ST6GAL1', 'score': 10.58}, {'connected_gene': 'HRG', 'score': 9.16}, {'connected_gene': 'GC03P186997', 'score': 0.34}, {'connected_gene': 'GC03P186996', 'score': 0.34}, {'connected_gene': 'PIR46786', 'score': 0.21}]
chr3	GH03I186757	186757010	186758517	0.52	[{'connected_gene': 'KNG1', 'score': 11.43}, {'connected_gene': 'ENSG00000200418', 'score': 11.11}, {'connected_gene': 'SNORA63', 'score': 11.11}, {'connected_gene': 'EIF4A2', 'score': 11.11}, {'connected_gene': 'SNORA81', 'score': 11.11}, {'connected_gene': 'RFC4', 'score': 11.05}, {'connected_gene': 'FETUB', 'score': 10.61}, {'connected_gene': 'AHSG', 'score': 10.41}, {'connected_gene': 'ENSG00000231724', 'score': 10.29}, {'connected_gene': 'HRG', 'score': 10.21}, {'connected_gene': 'PSMD10P2', 'score': 0.77}, {'connected_gene': 'LOC105374259', 'score': 0.77}, {'connected_gene': 'LOC105374258', 'score': 0.37}]
chr3	GH03I186663	186663332	186665281	0.49	[{'connected_gene': 'KNG1', 'score': 10.22}, {'connected_gene': 'FETUB', 'score': 10.14}, {'connected_gene': 'AHSG', 'score': 10.13}, {'connected_gene': 'HRG', 'score': 0.77}, {'connected_gene': 'LOC100533663', 'score': 0.34}, {'connected_gene': 'LOC105374258', 'score': 0.14}]
chr3	GH03I186682	186682468	186683690	0.64	[{'connected_gene': 'KNG1', 'score': 11.12}, {'connected_gene': 'FETUB', 'score': 10.26}, {'connected_gene': 'LOC100533663', 'score': 0.77}, {'connected_gene': 'HRG', 'score': 0.34}, {'connected_gene': 'LOC105374258', 'score': 0.17}]
chr3	GH03I186665	186665941	186666000	1.05	[{'connected_gene': 'HRG', 'score': 550.44}, {'connected_gene': 'LOC100533663', 'score': 0.34}, {'connected_gene': 'LOC105374258', 'score': 0.14}]
chr3	GH03I186760	186760076	186761770	0.73	[{'connected_gene': 'PSMD10P2', 'score': 550.77}, {'connected_gene': 'KNG1', 'score': 11.43}, {'connected_gene': 'EIF4A2', 'score': 11.14}, {'connected_gene': 'ENSG00000200418', 'score': 11.11}, {'connected_gene': 'SNORA63', 'score': 11.11}, {'connected_gene': 'SNORA81', 'score': 11.11}, {'connected_gene': 'RFC4', 'score': 11.05}, {'connected_gene': 'ENSG00000231724', 'score': 10.29}, {'connected_gene': 'HRG', 'score': 10.2}, {'connected_gene': 'GPS2P2', 'score': 7.55}, {'connected_gene': 'LOC105374259', 'score': 0.44}, {'connected_gene': 'RNU6-1105P', 'score': 0.39}, {'connected_gene': 'LOC105374258', 'score': 0.39}, {'connected_gene': 'GC03M186772', 'score': 0.39}]
chr3	GH03I186593	186593409	186595286	0.76	[{'connected_gene': 'FETUB', 'score': 10.4}, {'connected_gene': 'KNG1', 'score': 10.35}, {'connected_gene': 'RFC4', 'score': 9.93}, {'connected_gene': 'ENSG00000231724', 'score': 9.8}, {'connected_gene': 'HRG', 'score': 9.75}, {'connected_gene': 'DNAJB11', 'score': 4.76}, {'connected_gene': 'LOC100287402', 'score': 0.77}, {'connected_gene': 'ENSG00000283149', 'score': 0.39}, {'connected_gene': 'LOC105374258', 'score': 0.1}]
chr3	GH03I186597	186597972	186601328	0.93	[{'connected_gene': 'FETUB', 'score': 11.03}, {'connected_gene': 'KNG1', 'score': 10.32}, {'connected_gene': 'HRG', 'score': 10.25}, {'connected_gene': 'ENSG00000283390', 'score': 0.77}, {'connected_gene': 'AHSG', 'score': 0.39}, {'connected_gene': 'LOC105374258', 'score': 0.09}]
chr3	GH03I186669	186669161	186670460	0.69	[{'connected_gene': 'FETUB', 'score': 11.35}, {'connected_gene': 'KNG1', 'score': 11.2}, {'connected_gene': 'AHSG', 'score': 10.15}, {'connected_gene': 'HRG', 'score': 0.44}, {'connected_gene': 'LOC100533663', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.15}]
chr3	GH03I186640	186640006	186641105	1.09	[{'connected_gene': 'FETUB', 'score': 567.29}, {'connected_gene': 'HRG', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.12}]
chr3	GH03I186588	186588296	186591531	1.07	[{'connected_gene': 'AHSG', 'score': 12.3}, {'connected_gene': 'SNORD2', 'score': 10.75}, {'connected_gene': 'EIF4A2', 'score': 10.75}, {'connected_gene': 'ENSG00000200418', 'score': 10.75}, {'connected_gene': 'SNORA63', 'score': 10.75}, {'connected_gene': 'SNORA81', 'score': 10.75}, {'connected_gene': 'RFC4', 'score': 10.4}, {'connected_gene': 'ENSG00000231724', 'score': 10.4}, {'connected_gene': 'FETUB', 'score': 10.38}, {'connected_gene': 'KNG1', 'score': 10.35}, {'connected_gene': 'HRG', 'score': 10.04}, {'connected_gene': 'DNAJB11', 'score': 5.51}, {'connected_gene': 'CRYGS', 'score': 5.07}, {'connected_gene': 'LOC100287402', 'score': 0.44}, {'connected_gene': 'ENSG00000283149', 'score': 0.44}, {'connected_gene': 'LOC105374258', 'score': 0.09}]
chr3	GH03I186653	186653883	186655003	0.49	[{'connected_gene': 'AHSG', 'score': 10.83}, {'connected_gene': 'KNG1', 'score': 10.39}, {'connected_gene': 'HRG', 'score': 0.44}, {'connected_gene': 'FETUB', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.13}]
chr3	GH03I186652	186652883	186653816	0.59	[{'connected_gene': 'AHSG', 'score': 10.83}, {'connected_gene': 'KNG1', 'score': 10.39}, {'connected_gene': 'HRG', 'score': 0.44}, {'connected_gene': 'FETUB', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.13}]
chr3	GH03I186752	186752212	186756063	1.12	[{'connected_gene': 'LOC105374259', 'score': 550.77}, {'connected_gene': 'KNG1', 'score': 10.98}, {'connected_gene': 'EIF4A2', 'score': 10.98}, {'connected_gene': 'ENSG00000200418', 'score': 10.96}, {'connected_gene': 'SNORA63', 'score': 10.96}, {'connected_gene': 'SNORA81', 'score': 10.96}, {'connected_gene': 'RFC4', 'score': 10.69}, {'connected_gene': 'FETUB', 'score': 10.61}, {'connected_gene': 'ENSG00000231724', 'score': 10.17}, {'connected_gene': 'AHSG', 'score': 9.94}, {'connected_gene': 'HRG', 'score': 9.72}, {'connected_gene': 'PSMD10P2', 'score': 0.44}, {'connected_gene': 'LOC105374258', 'score': 0.37}]
chr3	GH03I186024	186024109	186024925	0.4	[{'connected_gene': 'ETV5-AS1', 'score': 10.68}, {'connected_gene': 'ETV5', 'score': 10.62}, {'connected_gene': 'KNG1', 'score': 9.95}, {'connected_gene': 'AHSG', 'score': 9.49}, {'connected_gene': 'HRG', 'score': 8.95}, {'connected_gene': 'DNAJB11', 'score': 4.8}, {'connected_gene': 'GC03P186008', 'score': 0.37}, {'connected_gene': 'ENSG00000277118', 'score': 0.23}]
chr3	GH03I186025	186025252	186025401	0.31	[{'connected_gene': 'ETV5-AS1', 'score': 10.68}, {'connected_gene': 'ETV5', 'score': 10.63}, {'connected_gene': 'KNG1', 'score': 9.95}, {'connected_gene': 'AHSG', 'score': 9.49}, {'connected_gene': 'HRG', 'score': 8.95}, {'connected_gene': 'GC03P186008', 'score': 0.37}, {'connected_gene': 'ENSG00000277118', 'score': 0.23}]
chr3	GH03I186021	186021401	186022462	0.54	[{'connected_gene': 'ETV5-AS1', 'score': 10.67}, {'connected_gene': 'ETV5', 'score': 10.62}, {'connected_gene': 'KNG1', 'score': 9.95}, {'connected_gene': 'AHSG', 'score': 9.49}, {'connected_gene': 'HRG', 'score': 8.95}, {'connected_gene': 'GC03P186008', 'score': 0.39}, {'connected_gene': 'ENSG00000277118', 'score': 0.23}]
chr3	GH03I186044	186044238	186045811	0.96	[{'connected_gene': 'ETV5-AS1', 'score': 11.25}, {'connected_gene': 'ETV5', 'score': 11.16}, {'connected_gene': 'HRG', 'score': 9.09}, {'connected_gene': 'ENSG00000277118', 'score': 0.29}, {'connected_gene': 'GC03P186008', 'score': 0.28}]
chr3	GH03I186596	186596801	186597200	0.93	[{'connected_gene': 'LOC100287402', 'score': 550.77}, {'connected_gene': 'ENSG00000283390', 'score': 550.77}, {'connected_gene': 'FETUB', 'score': 10.41}, {'connected_gene': 'KNG1', 'score': 10.35}, {'connected_gene': 'HRG', 'score': 10.26}, {'connected_gene': 'RFC4', 'score': 9.93}, {'connected_gene': 'ENSG00000231724', 'score': 9.8}, {'connected_gene': 'AHSG', 'score': 0.37}, {'connected_gene': 'ENSG00000283149', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.1}]
chr3	GH03I185983	185983801	185984000	0.77	[{'connected_gene': 'GC03M185982', 'score': 550.77}, {'connected_gene': 'TRA2B', 'score': 10.99}, {'connected_gene': 'AHSG', 'score': 10.48}, {'connected_gene': 'ETV5-AS1', 'score': 10.17}, {'connected_gene': 'ETV5', 'score': 10.15}, {'connected_gene': 'HRG', 'score': 8.77}, {'connected_gene': 'GC03P186008', 'score': 0.31}]