PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000498634	[[46688738, 46688966], [46690567, 46690841]]	[[46688854, 46688966], [46690567, 46690841]]
ENST00000239144	[[46689707, 46690871], [46691642, 46692301]]	[[46690563, 46690871], [46691642, 46692066]]
ENST00000576562	[[46690549, 46690868], [46691642, 46692066]]	[[46690563, 46690868], [46691642, 46692066]]
ENST00000468443	[[46691968, 46692114], [46692417, 46692478]]	[[46691968, 46692066]]
NM_024016	[[46689707, 46690871], [46691642, 46692301]]	[[46690563, 46690871], [46691642, 46692066]]

Promoter

Chrom	Start	End	Description
chr17	46690839	46690884	CAGE_peak_1_at_HOXB8_5end
chr17	46691732	46691766	CAGE_peak_4_at_HOXB8_5end
chr17	46691990	46692004	CAGE_peak_11_at_HOXB8_5end
chr17	46692198	46692237	CAGE_peak_12_at_HOXB8_5end
chr17	46692287	46692317	CAGE_peak_7_at_HOXB8_5end
chr17	46692318	46692362	CAGE_peak_5_at_HOXB8_5end
chr17	46692457	46692484	CAGE_peak_2_at_HOXB8_5end
chr17	46692582	46692589	CAGE_peak_14_at_HOXB8_5end
chr17	46692603	46692621	CAGE_peak_6_at_HOXB8_5end
chr17	46692624	46692659	CAGE_peak_3_at_HOXB8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I048623	48623432	48629868	2	[{'connected_gene': 'HOXB9', 'score': 560.38}, {'connected_gene': 'ENSG00000264701', 'score': 12.73}, {'connected_gene': 'ENSG00000230532', 'score': 11.87}, {'connected_gene': 'CDK5RAP3', 'score': 11.03}, {'connected_gene': 'PRAC2', 'score': 9.56}, {'connected_gene': 'PRAC1', 'score': 9.56}, {'connected_gene': 'HOXB13', 'score': 9.52}, {'connected_gene': 'LOC105371811', 'score': 9.51}, {'connected_gene': 'HOXB2', 'score': 8.9}, {'connected_gene': 'HOXB8', 'score': 4.92}, {'connected_gene': 'HOXB5', 'score': 2.52}, {'connected_gene': 'HOXB6', 'score': 2.51}, {'connected_gene': 'HOXB7', 'score': 2.2}, {'connected_gene': 'HOXB3', 'score': 1.57}, {'connected_gene': 'SNF8', 'score': 1.23}, {'connected_gene': 'PIR60728', 'score': 0.77}, {'connected_gene': 'HOXB-AS4', 'score': 0.77}]
chr17	GH17I048608	48608458	48618490	2.23	[{'connected_gene': 'HOXB8', 'score': 550.77}, {'connected_gene': 'PIR62254', 'score': 550.77}, {'connected_gene': 'HOXB7', 'score': 550.34}, {'connected_gene': 'ENSG00000263412', 'score': 20.94}, {'connected_gene': 'HOXB2', 'score': 14.82}, {'connected_gene': 'SUMO2P17', 'score': 11.94}, {'connected_gene': 'SNX11', 'score': 6.26}, {'connected_gene': 'HOXB9', 'score': 5.79}, {'connected_gene': 'CALCOCO2', 'score': 4.4}, {'connected_gene': 'SCRN2', 'score': 4.27}, {'connected_gene': 'UBE2Z', 'score': 4.24}, {'connected_gene': 'PIR55100', 'score': 0.77}]
chr17	GH17I048538	48538779	48607552	3.02	[{'connected_gene': 'HOXB2', 'score': 589.8}, {'connected_gene': 'HOXB3', 'score': 564.5}, {'connected_gene': 'HOXB6', 'score': 558.14}, {'connected_gene': 'HOXB4', 'score': 557.76}, {'connected_gene': 'HOXB5', 'score': 554.58}, {'connected_gene': 'PIR47329', 'score': 550.77}, {'connected_gene': 'PIR34300', 'score': 550.77}, {'connected_gene': 'UBE2Z', 'score': 44.27}, {'connected_gene': 'SP2', 'score': 41.54}, {'connected_gene': 'ENSG00000264701', 'score': 40.36}, {'connected_gene': 'CDK5RAP3', 'score': 33.27}, {'connected_gene': 'ENSG00000263412', 'score': 20.95}, {'connected_gene': 'KPNB1', 'score': 18.05}, {'connected_gene': 'SKAP1', 'score': 16.34}, {'connected_gene': 'HOXB9', 'score': 14.67}, {'connected_gene': 'HOXB-AS1', 'score': 12.33}, {'connected_gene': 'HOXB-AS3', 'score': 12.19}, {'connected_gene': 'SUMO2P17', 'score': 11.94}, {'connected_gene': 'LRRC46', 'score': 11.47}, {'connected_gene': 'HOXB-AS4', 'score': 11.23}, {'connected_gene': 'HOXB1', 'score': 11.1}, {'connected_gene': 'HOXB-AS2', 'score': 10.87}, {'connected_gene': 'ENSG00000266601', 'score': 10.36}, {'connected_gene': 'EGID-105371807', 'score': 9.93}, {'connected_gene': 'MIR1203', 'score': 8.92}, {'connected_gene': 'LOC102724532', 'score': 5.52}, {'connected_gene': 'SCRN2', 'score': 5.29}, {'connected_gene': 'SNX11', 'score': 5.16}, {'connected_gene': 'B4GALNT2', 'score': 5.12}, {'connected_gene': 'TTLL6', 'score': 5.04}, {'connected_gene': 'SP6', 'score': 4.62}, {'connected_gene': 'HOXB7', 'score': 4.39}, {'connected_gene': 'HOXB8', 'score': 4.28}, {'connected_gene': 'ENSG00000266821', 'score': 4.07}, {'connected_gene': 'GC17M048578', 'score': 0.77}, {'connected_gene': 'PIR40370', 'score': 0.77}, {'connected_gene': 'PIR53857', 'score': 0.77}, {'connected_gene': 'MIR10A', 'score': 0.44}, {'connected_gene': 'ENSG00000257178', 'score': 0.44}, {'connected_gene': 'PIR56911', 'score': 0.39}, {'connected_gene': 'PIR32705', 'score': 0.39}, {'connected_gene': 'GC17P048587', 'score': 0.39}, {'connected_gene': 'PIR40529', 'score': 0.39}, {'connected_gene': 'PIR49991', 'score': 0.37}, {'connected_gene': 'GC17P048589', 'score': 0.37}, {'connected_gene': 'PIR40384', 'score': 0.34}, {'connected_gene': 'PIR55455', 'score': 0.34}, {'connected_gene': 'PIR58858', 'score': 0.34}, {'connected_gene': 'PIR58910', 'score': 0.34}, {'connected_gene': 'GC17M048596', 'score': 0.34}, {'connected_gene': 'GC17M048544', 'score': 0.31}]