PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000343483	[[27202053, 27203460], [27204496, 27205149]]	[[27203221, 27203460], [27204496, 27205076]]
ENST00000497089	[[27202218, 27203460], [27208912, 27209063]]	None
ENST00000487384	[[27202925, 27203460], [27204496, 27204586], [27210049, 27210117]]	None
ENST00000396345	[[27203139, 27203460], [27204496, 27204586], [27204759, 27205145]]	[[27204582, 27204586], [27204759, 27205076]]
ENST00000489695	[[27203300, 27203460], [27204496, 27204586], [27209085, 27209356]]	None
NM_152739	[[27202056, 27203460], [27204496, 27205149]]	[[27203221, 27203460], [27204496, 27205076]]

Promoter

Chrom	Start	End	Description
chr7	27205043	27205050	CAGE_peak_5_at_HOXA9_5end
chr7	27205066	27205067	CAGE_peak_7_at_HOXA9_5end
chr7	27205089	27205096	CAGE_peak_4_at_HOXA9_5end
chr7	27205106	27205134	CAGE_peak_2_at_HOXA9_5end
chr7	27205136	27205164	CAGE_peak_1_at_HOXA9_5end
chr7	27205175	27205184	CAGE_peak_3_at_HOXA9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I026862	26862557	26865671	2.28	[{'connected_gene': 'SKAP2', 'score': 558.35}, {'connected_gene': 'HOTAIRM1', 'score': 22.1}, {'connected_gene': 'HNRNPA2B1', 'score': 12.66}, {'connected_gene': 'HOXA-AS3', 'score': 11.82}, {'connected_gene': 'HOXA4', 'score': 11.82}, {'connected_gene': 'HOXA6', 'score': 11.82}, {'connected_gene': 'HOXA3', 'score': 11.82}, {'connected_gene': 'HOXA5', 'score': 11.82}, {'connected_gene': 'HOXA1', 'score': 11.49}, {'connected_gene': 'HOXA2', 'score': 11.1}, {'connected_gene': 'HOXA9', 'score': 10.74}, {'connected_gene': 'HOXA10-AS', 'score': 10.74}, {'connected_gene': 'HOXA-AS2', 'score': 10.57}, {'connected_gene': 'KIAA0087', 'score': 9.85}, {'connected_gene': 'SNX10', 'score': 5.33}, {'connected_gene': 'GC07P026846', 'score': 0.34}, {'connected_gene': 'RPL7AP38', 'score': 0.22}]
chr7	GH07I028018	28018649	28020856	0.97	[{'connected_gene': 'HOXA13', 'score': 10.82}, {'connected_gene': 'ENSG00000253508', 'score': 10.82}, {'connected_gene': 'HOTTIP', 'score': 10.82}, {'connected_gene': 'HOXA11', 'score': 10.29}, {'connected_gene': 'HOXA11-AS', 'score': 10.29}, {'connected_gene': 'HOXA10', 'score': 10.29}, {'connected_gene': 'HOXA9', 'score': 10.29}, {'connected_gene': 'PIR54187', 'score': 0.39}, {'connected_gene': 'PIR39851', 'score': 0.12}, {'connected_gene': 'JAZF1', 'score': 0.1}]
chr7	GH07I028017	28017713	28018307	0.43	[{'connected_gene': 'HOXA13', 'score': 10.34}, {'connected_gene': 'HOTTIP', 'score': 10.34}, {'connected_gene': 'ENSG00000253508', 'score': 10.33}, {'connected_gene': 'HOXA11-AS', 'score': 10.12}, {'connected_gene': 'HOXA11', 'score': 10.12}, {'connected_gene': 'HOXA10', 'score': 10.12}, {'connected_gene': 'HOXA9', 'score': 10.12}, {'connected_gene': 'PIR54187', 'score': 0.39}, {'connected_gene': 'PIR39851', 'score': 0.12}, {'connected_gene': 'JAZF1', 'score': 0.1}]
chr7	GH07I027095	27095069	27181321	3.41	[{'connected_gene': 'HOXA2', 'score': 576.17}, {'connected_gene': 'HOXA9', 'score': 568.02}, {'connected_gene': 'HOXA10', 'score': 565.55}, {'connected_gene': 'HOXA1', 'score': 562.16}, {'connected_gene': 'HOXA3', 'score': 560.98}, {'connected_gene': 'HOXA6', 'score': 557.72}, {'connected_gene': 'HOXA4', 'score': 553.76}, {'connected_gene': 'HOXA5', 'score': 553.17}, {'connected_gene': 'HOXA7', 'score': 552.7}, {'connected_gene': 'HNRNPA2B1', 'score': 58.04}, {'connected_gene': 'HOTAIRM1', 'score': 43.49}, {'connected_gene': 'HOXA10-AS', 'score': 27.61}, {'connected_gene': 'HOXA-AS2', 'score': 21.16}, {'connected_gene': 'CBX3', 'score': 19.35}, {'connected_gene': 'HOXA11-AS', 'score': 15.79}, {'connected_gene': 'HOXA11', 'score': 14.27}, {'connected_gene': 'SKAP2', 'score': 13.15}, {'connected_gene': 'HOXA13', 'score': 12.76}, {'connected_gene': 'ENSG00000253508', 'score': 11.26}, {'connected_gene': 'HOTTIP', 'score': 11.25}, {'connected_gene': 'LOC105375304', 'score': 10.2}, {'connected_gene': 'KIAA0087', 'score': 9.83}, {'connected_gene': 'HOXA-AS3', 'score': 0.44}, {'connected_gene': 'ENSG00000272801', 'score': 0.39}, {'connected_gene': 'ENSG00000273433', 'score': 0.39}, {'connected_gene': 'LOC105375205', 'score': 0.34}, {'connected_gene': 'ENSG00000270182', 'score': 0.34}, {'connected_gene': 'GC07P027116', 'score': 0.34}, {'connected_gene': 'GC07M027172', 'score': 0.29}, {'connected_gene': 'MIR196B', 'score': 0.29}, {'connected_gene': 'ENSG00000277694', 'score': 0.28}, {'connected_gene': 'ENSG00000274396', 'score': 0.28}, {'connected_gene': 'ENSG00000274864', 'score': 0.28}, {'connected_gene': 'ENSG00000276771', 'score': 0.28}, {'connected_gene': 'ENSG00000257184', 'score': 0.26}, {'connected_gene': 'HOXA10-HOXA9', 'score': 0.26}, {'connected_gene': 'ENSG00000276528', 'score': 0.26}]
chr7	GH07I028082	28082367	28084999	1.11	[{'connected_gene': 'JAZF1', 'score': 10.51}, {'connected_gene': 'JAZF1-AS1', 'score': 10.51}, {'connected_gene': 'HOXA11-AS', 'score': 9.65}, {'connected_gene': 'HOXA11', 'score': 9.65}, {'connected_gene': 'HOXA9', 'score': 9.65}, {'connected_gene': 'HOXA10', 'score': 9.65}, {'connected_gene': 'ENSG00000253508', 'score': 9.17}, {'connected_gene': 'HOXA13', 'score': 9.17}, {'connected_gene': 'HOTTIP', 'score': 9.17}, {'connected_gene': 'EVX1-AS', 'score': 8.72}, {'connected_gene': 'ENSG00000253308', 'score': 8.72}, {'connected_gene': 'EVX1', 'score': 8.72}, {'connected_gene': 'GC07P028093', 'score': 0.39}, {'connected_gene': 'GC07P028054', 'score': 0.31}]
chr7	GH07I028081	28081201	28081400	0.2	[{'connected_gene': 'JAZF1', 'score': 10.51}, {'connected_gene': 'JAZF1-AS1', 'score': 10.51}, {'connected_gene': 'HOXA11-AS', 'score': 9.65}, {'connected_gene': 'HOXA11', 'score': 9.65}, {'connected_gene': 'HOXA9', 'score': 9.65}, {'connected_gene': 'HOXA10', 'score': 9.65}, {'connected_gene': 'HOXA13', 'score': 9.17}, {'connected_gene': 'HOTTIP', 'score': 9.17}, {'connected_gene': 'ENSG00000253508', 'score': 9.17}, {'connected_gene': 'EVX1-AS', 'score': 8.72}, {'connected_gene': 'EVX1', 'score': 8.72}, {'connected_gene': 'ENSG00000253308', 'score': 8.72}, {'connected_gene': 'GC07P028093', 'score': 0.39}, {'connected_gene': 'GC07P028054', 'score': 0.31}]
chr7	GH07I027784	27784400	27784800	0.96	[{'connected_gene': 'HIBADH', 'score': 11.07}, {'connected_gene': 'HOXA11-AS', 'score': 10.23}, {'connected_gene': 'HOXA10', 'score': 10.23}, {'connected_gene': 'HOXA9', 'score': 10.23}, {'connected_gene': 'HOXA11', 'score': 10.23}, {'connected_gene': 'HOTTIP', 'score': 10.2}, {'connected_gene': 'HOXA13', 'score': 10.2}, {'connected_gene': 'ENSG00000253508', 'score': 10.2}, {'connected_gene': 'GC07M027748', 'score': 0.29}, {'connected_gene': 'GC07P027829', 'score': 0.26}, {'connected_gene': 'TAX1BP1', 'score': 0.25}]
chr7	GH07I026372	26372120	26377750	1.91	[{'connected_gene': 'LOC105375304', 'score': 557.73}, {'connected_gene': 'HNRNPA2B1', 'score': 48.53}, {'connected_gene': 'HOXA10-AS', 'score': 11.98}, {'connected_gene': 'HOXA9', 'score': 11.98}, {'connected_gene': 'CBX3', 'score': 10.86}, {'connected_gene': 'KIAA0087', 'score': 9.89}, {'connected_gene': 'C7orf71', 'score': 9.35}, {'connected_gene': 'SNX10', 'score': 8.07}, {'connected_gene': 'LOC441204', 'score': 4.73}, {'connected_gene': 'GC07P026242', 'score': 0.12}]
chr7	GH07I027922	27922996	27923499	0.46	[{'connected_gene': 'ENSG00000253508', 'score': 11.56}, {'connected_gene': 'HOXA13', 'score': 11.56}, {'connected_gene': 'HOTTIP', 'score': 11.56}, {'connected_gene': 'HOXA11-AS', 'score': 10.71}, {'connected_gene': 'HOXA11', 'score': 10.71}, {'connected_gene': 'HOXA9', 'score': 10.71}, {'connected_gene': 'HOXA10', 'score': 10.71}, {'connected_gene': 'PIR39851', 'score': 0.28}, {'connected_gene': 'PIR54187', 'score': 0.14}, {'connected_gene': 'JAZF1', 'score': 0.07}]
chr7	GH07I027920	27920991	27921638	1.04	[{'connected_gene': 'ENSG00000253508', 'score': 11.56}, {'connected_gene': 'HOXA13', 'score': 11.56}, {'connected_gene': 'HOTTIP', 'score': 11.56}, {'connected_gene': 'HOXA11-AS', 'score': 10.71}, {'connected_gene': 'HOXA11', 'score': 10.71}, {'connected_gene': 'HOXA9', 'score': 10.71}, {'connected_gene': 'HOXA10', 'score': 10.71}, {'connected_gene': 'ENSG00000253308', 'score': 10.65}, {'connected_gene': 'EVX1', 'score': 10.64}, {'connected_gene': 'EVX1-AS', 'score': 10.08}, {'connected_gene': 'PIR39851', 'score': 0.28}, {'connected_gene': 'PIR54187', 'score': 0.14}, {'connected_gene': 'JAZF1', 'score': 0.07}]
chr7	GH07I027204	27204847	27205717	0.38	[{'connected_gene': 'ENSG00000277553', 'score': 550.77}, {'connected_gene': 'HOXA10', 'score': 11.63}, {'connected_gene': 'HOXA9', 'score': 11.61}, {'connected_gene': 'ENSG00000253308', 'score': 11.54}, {'connected_gene': 'EVX1', 'score': 11.54}, {'connected_gene': 'EVX1-AS', 'score': 11.53}, {'connected_gene': 'ENSG00000277469', 'score': 0.77}, {'connected_gene': 'HOTTIP', 'score': 0.44}]
chr7	GH07I027203	27202161	27202758	0.54	[{'connected_gene': 'ENSG00000278708', 'score': 550.77}, {'connected_gene': 'ENSG00000276609', 'score': 550.77}, {'connected_gene': 'ENSG00000277469', 'score': 550.77}, {'connected_gene': 'ENSG00000253308', 'score': 11.98}, {'connected_gene': 'EVX1', 'score': 11.97}, {'connected_gene': 'EVX1-AS', 'score': 11.97}, {'connected_gene': 'HOXA10', 'score': 11.66}, {'connected_gene': 'HOXA9', 'score': 11.63}, {'connected_gene': 'HOTTIP', 'score': 0.77}, {'connected_gene': 'ENSG00000277553', 'score': 0.77}]
chr7	GH07I027210	27210239	27211438	0.83	[{'connected_gene': 'ENSG00000253308', 'score': 11.75}, {'connected_gene': 'EVX1', 'score': 11.75}, {'connected_gene': 'EVX1-AS', 'score': 11.73}, {'connected_gene': 'HOXA11-AS', 'score': 11.72}, {'connected_gene': 'HOXA11', 'score': 11.72}, {'connected_gene': 'HOXA10', 'score': 11.71}, {'connected_gene': 'HOXA9', 'score': 11.69}, {'connected_gene': 'HOXA1', 'score': 9.33}, {'connected_gene': 'HOTAIRM1', 'score': 9.32}, {'connected_gene': 'HOXA13', 'score': 5.9}, {'connected_gene': 'ENSG00000277553', 'score': 0.77}]
chr7	GH07I027213	27213663	27213798	0.37	[{'connected_gene': 'ENSG00000253308', 'score': 11.77}, {'connected_gene': 'EVX1', 'score': 11.77}, {'connected_gene': 'EVX1-AS', 'score': 11.75}, {'connected_gene': 'HOXA11-AS', 'score': 11.72}, {'connected_gene': 'HOXA11', 'score': 11.72}, {'connected_gene': 'HOXA10', 'score': 11.71}, {'connected_gene': 'HOXA9', 'score': 11.69}, {'connected_gene': 'HOTAIRM1', 'score': 9.32}, {'connected_gene': 'HOXA1', 'score': 9.32}, {'connected_gene': 'ENSG00000277553', 'score': 0.44}]
chr7	GH07I026655	26655660	26656329	0.69	[{'connected_gene': 'GC07M026655', 'score': 550.77}, {'connected_gene': 'LOC105375304', 'score': 11.51}, {'connected_gene': 'SKAP2', 'score': 11.23}, {'connected_gene': 'HOXA10-AS', 'score': 10.46}, {'connected_gene': 'HOXA9', 'score': 10.46}, {'connected_gene': 'HOTAIRM1', 'score': 7.06}, {'connected_gene': 'GC07P026673', 'score': 0.37}, {'connected_gene': 'GC07P026242', 'score': 0.05}]
chr7	GH07I026653	26653459	26654289	0.8	[{'connected_gene': 'GC07M026655', 'score': 550.77}, {'connected_gene': 'LOC105375304', 'score': 11.51}, {'connected_gene': 'HOXA10-AS', 'score': 10.46}, {'connected_gene': 'HOXA9', 'score': 10.45}, {'connected_gene': 'C7orf71', 'score': 0.37}, {'connected_gene': 'GC07P026242', 'score': 0.05}]