PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000222718	[[27139720, 27141084], [27141728, 27142430]]	[[27140344, 27141084], [27141728, 27142119]]
NM_006735	[[27139972, 27141084], [27141728, 27142394]]	[[27140344, 27141084], [27141728, 27142119]]

Promoter

Chrom	Start	End	Description
chr7	27142290	27142310	CAGE_peak_1_at_HOXA2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I026964	26964401	26964600	0.43	[{'connected_gene': 'SKAP2', 'score': 10.78}, {'connected_gene': 'HOXA2', 'score': 10.03}, {'connected_gene': 'HOXA-AS2', 'score': 10.02}, {'connected_gene': 'HOXA3', 'score': 10.0}, {'connected_gene': 'HOTAIRM1', 'score': 9.81}, {'connected_gene': 'HOXA1', 'score': 9.81}, {'connected_gene': 'GC07M026956', 'score': 0.39}, {'connected_gene': 'GC07M026955', 'score': 0.39}, {'connected_gene': 'GC07P026980', 'score': 0.37}]
chr7	GH07I026704	26704462	26706260	0.63	[{'connected_gene': 'SKAP2', 'score': 20.02}, {'connected_gene': 'HOXA2', 'score': 10.28}, {'connected_gene': 'HOXA-AS2', 'score': 10.28}, {'connected_gene': 'HOXA3', 'score': 10.28}, {'connected_gene': 'GC07P026673', 'score': 0.29}, {'connected_gene': 'GC07M026718', 'score': 0.28}, {'connected_gene': 'GC07P026242', 'score': 0.04}]
chr7	GH07I026918	26918060	26919011	0.2	[{'connected_gene': 'SKAP2', 'score': 13.35}, {'connected_gene': 'HOTAIRM1', 'score': 10.72}, {'connected_gene': 'HOXA1', 'score': 10.72}, {'connected_gene': 'HOXA2', 'score': 10.72}, {'connected_gene': 'RPL7AP38', 'score': 0.77}, {'connected_gene': 'GC07P026846', 'score': 0.18}]
chr7	GH07I026947	26947284	26949966	0.76	[{'connected_gene': 'SKAP2', 'score': 23.39}, {'connected_gene': 'HOTAIRM1', 'score': 11.21}, {'connected_gene': 'HOXA1', 'score': 11.21}, {'connected_gene': 'HOXA2', 'score': 10.84}, {'connected_gene': 'HOXA-AS2', 'score': 10.57}, {'connected_gene': 'HOXA3', 'score': 10.55}, {'connected_gene': 'GC07M026956', 'score': 0.44}, {'connected_gene': 'GC07M026955', 'score': 0.44}, {'connected_gene': 'RPL7AP38', 'score': 0.31}]
chr7	GH07I026862	26862557	26865671	2.28	[{'connected_gene': 'SKAP2', 'score': 558.35}, {'connected_gene': 'HOTAIRM1', 'score': 22.1}, {'connected_gene': 'HNRNPA2B1', 'score': 12.66}, {'connected_gene': 'HOXA-AS3', 'score': 11.82}, {'connected_gene': 'HOXA4', 'score': 11.82}, {'connected_gene': 'HOXA6', 'score': 11.82}, {'connected_gene': 'HOXA3', 'score': 11.82}, {'connected_gene': 'HOXA5', 'score': 11.82}, {'connected_gene': 'HOXA1', 'score': 11.49}, {'connected_gene': 'HOXA2', 'score': 11.1}, {'connected_gene': 'HOXA9', 'score': 10.74}, {'connected_gene': 'HOXA10-AS', 'score': 10.74}, {'connected_gene': 'HOXA-AS2', 'score': 10.57}, {'connected_gene': 'KIAA0087', 'score': 9.85}, {'connected_gene': 'SNX10', 'score': 5.33}, {'connected_gene': 'GC07P026846', 'score': 0.34}, {'connected_gene': 'RPL7AP38', 'score': 0.22}]
chr7	GH07I027046	27046735	27047820	0.66	[{'connected_gene': 'NHP2P2', 'score': 550.77}, {'connected_gene': 'HOTAIRM1', 'score': 26.64}, {'connected_gene': 'HOXA1', 'score': 11.22}, {'connected_gene': 'HOXA2', 'score': 11.2}, {'connected_gene': 'HOXA-AS2', 'score': 11.03}, {'connected_gene': 'HOXA3', 'score': 10.96}, {'connected_gene': 'SKAP2', 'score': 10.66}, {'connected_gene': 'TPM3P4', 'score': 0.34}]
chr7	GH07I027095	27095069	27181321	3.41	[{'connected_gene': 'HOXA2', 'score': 576.17}, {'connected_gene': 'HOXA9', 'score': 568.02}, {'connected_gene': 'HOXA10', 'score': 565.55}, {'connected_gene': 'HOXA1', 'score': 562.16}, {'connected_gene': 'HOXA3', 'score': 560.98}, {'connected_gene': 'HOXA6', 'score': 557.72}, {'connected_gene': 'HOXA4', 'score': 553.76}, {'connected_gene': 'HOXA5', 'score': 553.17}, {'connected_gene': 'HOXA7', 'score': 552.7}, {'connected_gene': 'HNRNPA2B1', 'score': 58.04}, {'connected_gene': 'HOTAIRM1', 'score': 43.49}, {'connected_gene': 'HOXA10-AS', 'score': 27.61}, {'connected_gene': 'HOXA-AS2', 'score': 21.16}, {'connected_gene': 'CBX3', 'score': 19.35}, {'connected_gene': 'HOXA11-AS', 'score': 15.79}, {'connected_gene': 'HOXA11', 'score': 14.27}, {'connected_gene': 'SKAP2', 'score': 13.15}, {'connected_gene': 'HOXA13', 'score': 12.76}, {'connected_gene': 'ENSG00000253508', 'score': 11.26}, {'connected_gene': 'HOTTIP', 'score': 11.25}, {'connected_gene': 'LOC105375304', 'score': 10.2}, {'connected_gene': 'KIAA0087', 'score': 9.83}, {'connected_gene': 'HOXA-AS3', 'score': 0.44}, {'connected_gene': 'ENSG00000272801', 'score': 0.39}, {'connected_gene': 'ENSG00000273433', 'score': 0.39}, {'connected_gene': 'LOC105375205', 'score': 0.34}, {'connected_gene': 'ENSG00000270182', 'score': 0.34}, {'connected_gene': 'GC07P027116', 'score': 0.34}, {'connected_gene': 'GC07M027172', 'score': 0.29}, {'connected_gene': 'MIR196B', 'score': 0.29}, {'connected_gene': 'ENSG00000277694', 'score': 0.28}, {'connected_gene': 'ENSG00000274396', 'score': 0.28}, {'connected_gene': 'ENSG00000274864', 'score': 0.28}, {'connected_gene': 'ENSG00000276771', 'score': 0.28}, {'connected_gene': 'ENSG00000257184', 'score': 0.26}, {'connected_gene': 'HOXA10-HOXA9', 'score': 0.26}, {'connected_gene': 'ENSG00000276528', 'score': 0.26}]
chr7	GH07I027082	27082302	27082451	0.2	[{'connected_gene': 'HOXA2', 'score': 11.98}, {'connected_gene': 'HOXA-AS2', 'score': 11.96}, {'connected_gene': 'HOXA3', 'score': 11.84}, {'connected_gene': 'HOTAIRM1', 'score': 0.39}, {'connected_gene': 'NHP2P2', 'score': 0.29}]
chr7	GH07I026813	26813526	26813881	0.66	[{'connected_gene': 'HOXA2', 'score': 10.46}, {'connected_gene': 'HOXA-AS2', 'score': 10.46}, {'connected_gene': 'HOXA3', 'score': 10.46}, {'connected_gene': 'HOTAIRM1', 'score': 10.16}, {'connected_gene': 'HOXA1', 'score': 10.16}, {'connected_gene': 'HOXA5', 'score': 6.44}, {'connected_gene': 'GC07P026846', 'score': 0.31}, {'connected_gene': 'GC07M026718', 'score': 0.2}, {'connected_gene': 'SKAP2', 'score': 0.09}, {'connected_gene': 'GC07P026242', 'score': 0.03}]
chr7	GH07I026909	26909372	26910786	0.92	[{'connected_gene': 'HOTAIRM1', 'score': 17.72}, {'connected_gene': 'SKAP2', 'score': 13.3}, {'connected_gene': 'HOXA2', 'score': 10.08}, {'connected_gene': 'HOXA-AS2', 'score': 10.08}, {'connected_gene': 'HOXA3', 'score': 10.06}, {'connected_gene': 'RPL7AP38', 'score': 0.39}, {'connected_gene': 'GC07P026846', 'score': 0.2}]
chr7	GH07I027080	27080822	27081671	0.54	[{'connected_gene': 'HOTAIRM1', 'score': 16.04}, {'connected_gene': 'SKAP2', 'score': 12.02}, {'connected_gene': 'HOXA2', 'score': 11.98}, {'connected_gene': 'HOXA-AS2', 'score': 11.96}, {'connected_gene': 'HOXA3', 'score': 11.84}, {'connected_gene': 'NHP2P2', 'score': 0.29}]
chr7	GH07I027030	27030496	27032539	0.86	[{'connected_gene': 'HOTAIRM1', 'score': 54.94}, {'connected_gene': 'SKAP2', 'score': 23.51}, {'connected_gene': 'HOXA1', 'score': 11.35}, {'connected_gene': 'HOXA2', 'score': 10.97}, {'connected_gene': 'HOXA-AS2', 'score': 10.42}, {'connected_gene': 'HOXA3', 'score': 10.37}, {'connected_gene': 'TPM3P4', 'score': 0.44}, {'connected_gene': 'NHP2P2', 'score': 0.37}]
chr7	GH07I026855	26855142	26859953	1.26	[{'connected_gene': 'HOTAIRM1', 'score': 36.78}, {'connected_gene': 'HOXA5', 'score': 18.57}, {'connected_gene': 'HOXA-AS3', 'score': 12.19}, {'connected_gene': 'HOXA4', 'score': 12.19}, {'connected_gene': 'HOXA3', 'score': 12.19}, {'connected_gene': 'HOXA6', 'score': 12.19}, {'connected_gene': 'HOXA1', 'score': 11.69}, {'connected_gene': 'HOXA2', 'score': 11.69}, {'connected_gene': 'HOXA-AS2', 'score': 11.16}, {'connected_gene': 'SKAP2', 'score': 6.46}, {'connected_gene': 'GC07P026846', 'score': 0.39}, {'connected_gene': 'RPL7AP38', 'score': 0.21}]
chr7	GH07I026868	26868391	26869801	0.58	[{'connected_gene': 'HOTAIRM1', 'score': 30.51}, {'connected_gene': 'HOXA2', 'score': 10.44}, {'connected_gene': 'SNX10', 'score': 5.39}, {'connected_gene': 'GC07P026846', 'score': 0.31}, {'connected_gene': 'RPL7AP38', 'score': 0.23}, {'connected_gene': 'SKAP2', 'score': 0.13}]
chr7	GH07I027066	27066282	27066431	0.67	[{'connected_gene': 'HOTAIRM1', 'score': 12.07}, {'connected_gene': 'HOXA1', 'score': 12.07}, {'connected_gene': 'HOXA2', 'score': 12.03}, {'connected_gene': 'HOXA-AS2', 'score': 11.25}, {'connected_gene': 'HOXA3', 'score': 11.16}, {'connected_gene': 'SKAP2', 'score': 10.28}, {'connected_gene': 'NHP2P2', 'score': 0.37}]
chr7	GH07I026860	26860462	26860611	0.74	[{'connected_gene': 'HOXA-AS3', 'score': 11.82}, {'connected_gene': 'HOXA5', 'score': 11.82}, {'connected_gene': 'HOXA4', 'score': 11.82}, {'connected_gene': 'HOXA6', 'score': 11.82}, {'connected_gene': 'HOXA3', 'score': 11.82}, {'connected_gene': 'HOXA2', 'score': 11.11}, {'connected_gene': 'HOTAIRM1', 'score': 11.1}, {'connected_gene': 'HOXA1', 'score': 11.1}, {'connected_gene': 'HOXA-AS2', 'score': 10.57}, {'connected_gene': 'GC07P026846', 'score': 0.37}, {'connected_gene': 'RPL7AP38', 'score': 0.21}, {'connected_gene': 'SKAP2', 'score': 0.12}]