PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000343060	[[27132611, 27134414], [27134879, 27135593]]	[[27134058, 27134414], [27134879, 27135531]]
ENST00000355633	[[27132931, 27134414], [27134879, 27134974], [27135177, 27135615]]	[[27134914, 27134974], [27135177, 27135531]]
NM_005522	[[27132611, 27134414], [27134879, 27135625]]	[[27134058, 27134414], [27134879, 27135531]]
NM_153620	[[27132611, 27134414], [27134879, 27134974], [27135177, 27135625]]	[[27134914, 27134974], [27135177, 27135531]]

Promoter

Chrom	Start	End	Description
chr7	27135054	27135060	CAGE_peak_5_at_HOXA1_5end
chr7	27135418	27135419	CAGE_peak_6_at_HOXA1_5end
chr7	27135533	27135546	CAGE_peak_3_at_HOXA1_5end
chr7	27135568	27135590	CAGE_peak_2_at_HOXA1_5end
chr7	27135591	27135658	CAGE_peak_1_at_HOXA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I026964	26964401	26964600	0.43	[{'connected_gene': 'SKAP2', 'score': 10.78}, {'connected_gene': 'HOXA2', 'score': 10.03}, {'connected_gene': 'HOXA-AS2', 'score': 10.02}, {'connected_gene': 'HOXA3', 'score': 10.0}, {'connected_gene': 'HOTAIRM1', 'score': 9.81}, {'connected_gene': 'HOXA1', 'score': 9.81}, {'connected_gene': 'GC07M026956', 'score': 0.39}, {'connected_gene': 'GC07M026955', 'score': 0.39}, {'connected_gene': 'GC07P026980', 'score': 0.37}]
chr7	GH07I026918	26918060	26919011	0.2	[{'connected_gene': 'SKAP2', 'score': 13.35}, {'connected_gene': 'HOTAIRM1', 'score': 10.72}, {'connected_gene': 'HOXA1', 'score': 10.72}, {'connected_gene': 'HOXA2', 'score': 10.72}, {'connected_gene': 'RPL7AP38', 'score': 0.77}, {'connected_gene': 'GC07P026846', 'score': 0.18}]
chr7	GH07I026947	26947284	26949966	0.76	[{'connected_gene': 'SKAP2', 'score': 23.39}, {'connected_gene': 'HOTAIRM1', 'score': 11.21}, {'connected_gene': 'HOXA1', 'score': 11.21}, {'connected_gene': 'HOXA2', 'score': 10.84}, {'connected_gene': 'HOXA-AS2', 'score': 10.57}, {'connected_gene': 'HOXA3', 'score': 10.55}, {'connected_gene': 'GC07M026956', 'score': 0.44}, {'connected_gene': 'GC07M026955', 'score': 0.44}, {'connected_gene': 'RPL7AP38', 'score': 0.31}]
chr7	GH07I026735	26735990	26736566	0.38	[{'connected_gene': 'SKAP2', 'score': 17.35}, {'connected_gene': 'HOTAIRM1', 'score': 16.84}, {'connected_gene': 'HOXA1', 'score': 9.64}, {'connected_gene': 'C7orf71', 'score': 9.52}, {'connected_gene': 'SNX10', 'score': 5.5}, {'connected_gene': 'GC07M026718', 'score': 0.44}, {'connected_gene': 'GC07P026673', 'score': 0.21}, {'connected_gene': 'GC07P026242', 'score': 0.04}]
chr7	GH07I026862	26862557	26865671	2.28	[{'connected_gene': 'SKAP2', 'score': 558.35}, {'connected_gene': 'HOTAIRM1', 'score': 22.1}, {'connected_gene': 'HNRNPA2B1', 'score': 12.66}, {'connected_gene': 'HOXA-AS3', 'score': 11.82}, {'connected_gene': 'HOXA4', 'score': 11.82}, {'connected_gene': 'HOXA6', 'score': 11.82}, {'connected_gene': 'HOXA3', 'score': 11.82}, {'connected_gene': 'HOXA5', 'score': 11.82}, {'connected_gene': 'HOXA1', 'score': 11.49}, {'connected_gene': 'HOXA2', 'score': 11.1}, {'connected_gene': 'HOXA9', 'score': 10.74}, {'connected_gene': 'HOXA10-AS', 'score': 10.74}, {'connected_gene': 'HOXA-AS2', 'score': 10.57}, {'connected_gene': 'KIAA0087', 'score': 9.85}, {'connected_gene': 'SNX10', 'score': 5.33}, {'connected_gene': 'GC07P026846', 'score': 0.34}, {'connected_gene': 'RPL7AP38', 'score': 0.22}]
chr7	GH07I027046	27046735	27047820	0.66	[{'connected_gene': 'NHP2P2', 'score': 550.77}, {'connected_gene': 'HOTAIRM1', 'score': 26.64}, {'connected_gene': 'HOXA1', 'score': 11.22}, {'connected_gene': 'HOXA2', 'score': 11.2}, {'connected_gene': 'HOXA-AS2', 'score': 11.03}, {'connected_gene': 'HOXA3', 'score': 10.96}, {'connected_gene': 'SKAP2', 'score': 10.66}, {'connected_gene': 'TPM3P4', 'score': 0.34}]
chr7	GH07I026853	26853902	26854051	0.77	[{'connected_gene': 'HOXA5', 'score': 18.37}, {'connected_gene': 'HOXA-AS3', 'score': 11.99}, {'connected_gene': 'HOXA4', 'score': 11.99}, {'connected_gene': 'HOXA6', 'score': 11.99}, {'connected_gene': 'HOXA3', 'score': 11.99}, {'connected_gene': 'HOTAIRM1', 'score': 11.69}, {'connected_gene': 'HOXA1', 'score': 11.69}, {'connected_gene': 'GC07P026846', 'score': 0.39}, {'connected_gene': 'RPL7AP38', 'score': 0.2}, {'connected_gene': 'SKAP2', 'score': 0.11}]
chr7	GH07I027095	27095069	27181321	3.41	[{'connected_gene': 'HOXA2', 'score': 576.17}, {'connected_gene': 'HOXA9', 'score': 568.02}, {'connected_gene': 'HOXA10', 'score': 565.55}, {'connected_gene': 'HOXA1', 'score': 562.16}, {'connected_gene': 'HOXA3', 'score': 560.98}, {'connected_gene': 'HOXA6', 'score': 557.72}, {'connected_gene': 'HOXA4', 'score': 553.76}, {'connected_gene': 'HOXA5', 'score': 553.17}, {'connected_gene': 'HOXA7', 'score': 552.7}, {'connected_gene': 'HNRNPA2B1', 'score': 58.04}, {'connected_gene': 'HOTAIRM1', 'score': 43.49}, {'connected_gene': 'HOXA10-AS', 'score': 27.61}, {'connected_gene': 'HOXA-AS2', 'score': 21.16}, {'connected_gene': 'CBX3', 'score': 19.35}, {'connected_gene': 'HOXA11-AS', 'score': 15.79}, {'connected_gene': 'HOXA11', 'score': 14.27}, {'connected_gene': 'SKAP2', 'score': 13.15}, {'connected_gene': 'HOXA13', 'score': 12.76}, {'connected_gene': 'ENSG00000253508', 'score': 11.26}, {'connected_gene': 'HOTTIP', 'score': 11.25}, {'connected_gene': 'LOC105375304', 'score': 10.2}, {'connected_gene': 'KIAA0087', 'score': 9.83}, {'connected_gene': 'HOXA-AS3', 'score': 0.44}, {'connected_gene': 'ENSG00000272801', 'score': 0.39}, {'connected_gene': 'ENSG00000273433', 'score': 0.39}, {'connected_gene': 'LOC105375205', 'score': 0.34}, {'connected_gene': 'ENSG00000270182', 'score': 0.34}, {'connected_gene': 'GC07P027116', 'score': 0.34}, {'connected_gene': 'GC07M027172', 'score': 0.29}, {'connected_gene': 'MIR196B', 'score': 0.29}, {'connected_gene': 'ENSG00000277694', 'score': 0.28}, {'connected_gene': 'ENSG00000274396', 'score': 0.28}, {'connected_gene': 'ENSG00000274864', 'score': 0.28}, {'connected_gene': 'ENSG00000276771', 'score': 0.28}, {'connected_gene': 'ENSG00000257184', 'score': 0.26}, {'connected_gene': 'HOXA10-HOXA9', 'score': 0.26}, {'connected_gene': 'ENSG00000276528', 'score': 0.26}]
chr7	GH07I026813	26813526	26813881	0.66	[{'connected_gene': 'HOXA2', 'score': 10.46}, {'connected_gene': 'HOXA-AS2', 'score': 10.46}, {'connected_gene': 'HOXA3', 'score': 10.46}, {'connected_gene': 'HOTAIRM1', 'score': 10.16}, {'connected_gene': 'HOXA1', 'score': 10.16}, {'connected_gene': 'HOXA5', 'score': 6.44}, {'connected_gene': 'GC07P026846', 'score': 0.31}, {'connected_gene': 'GC07M026718', 'score': 0.2}, {'connected_gene': 'SKAP2', 'score': 0.09}, {'connected_gene': 'GC07P026242', 'score': 0.03}]
chr7	GH07I027712	27712143	27713387	0.62	[{'connected_gene': 'HIBADH', 'score': 11.82}, {'connected_gene': 'HOXA1', 'score': 4.36}, {'connected_gene': 'TAX1BP1', 'score': 0.31}, {'connected_gene': 'LOC105375211', 'score': 0.2}]
chr7	GH07I027030	27030496	27032539	0.86	[{'connected_gene': 'HOTAIRM1', 'score': 54.94}, {'connected_gene': 'SKAP2', 'score': 23.51}, {'connected_gene': 'HOXA1', 'score': 11.35}, {'connected_gene': 'HOXA2', 'score': 10.97}, {'connected_gene': 'HOXA-AS2', 'score': 10.42}, {'connected_gene': 'HOXA3', 'score': 10.37}, {'connected_gene': 'TPM3P4', 'score': 0.44}, {'connected_gene': 'NHP2P2', 'score': 0.37}]
chr7	GH07I026855	26855142	26859953	1.26	[{'connected_gene': 'HOTAIRM1', 'score': 36.78}, {'connected_gene': 'HOXA5', 'score': 18.57}, {'connected_gene': 'HOXA-AS3', 'score': 12.19}, {'connected_gene': 'HOXA4', 'score': 12.19}, {'connected_gene': 'HOXA3', 'score': 12.19}, {'connected_gene': 'HOXA6', 'score': 12.19}, {'connected_gene': 'HOXA1', 'score': 11.69}, {'connected_gene': 'HOXA2', 'score': 11.69}, {'connected_gene': 'HOXA-AS2', 'score': 11.16}, {'connected_gene': 'SKAP2', 'score': 6.46}, {'connected_gene': 'GC07P026846', 'score': 0.39}, {'connected_gene': 'RPL7AP38', 'score': 0.21}]
chr7	GH07I026694	26694262	26694411	0.2	[{'connected_gene': 'HOTAIRM1', 'score': 9.87}, {'connected_gene': 'HOXA1', 'score': 9.87}, {'connected_gene': 'GC07P026673', 'score': 0.34}, {'connected_gene': 'GC07M026718', 'score': 0.25}, {'connected_gene': 'SKAP2', 'score': 0.06}, {'connected_gene': 'GC07P026242', 'score': 0.05}]
chr7	GH07I027066	27066282	27066431	0.67	[{'connected_gene': 'HOTAIRM1', 'score': 12.07}, {'connected_gene': 'HOXA1', 'score': 12.07}, {'connected_gene': 'HOXA2', 'score': 12.03}, {'connected_gene': 'HOXA-AS2', 'score': 11.25}, {'connected_gene': 'HOXA3', 'score': 11.16}, {'connected_gene': 'SKAP2', 'score': 10.28}, {'connected_gene': 'NHP2P2', 'score': 0.37}]
chr7	GH07I026860	26860462	26860611	0.74	[{'connected_gene': 'HOXA-AS3', 'score': 11.82}, {'connected_gene': 'HOXA5', 'score': 11.82}, {'connected_gene': 'HOXA4', 'score': 11.82}, {'connected_gene': 'HOXA6', 'score': 11.82}, {'connected_gene': 'HOXA3', 'score': 11.82}, {'connected_gene': 'HOXA2', 'score': 11.11}, {'connected_gene': 'HOTAIRM1', 'score': 11.1}, {'connected_gene': 'HOXA1', 'score': 11.1}, {'connected_gene': 'HOXA-AS2', 'score': 10.57}, {'connected_gene': 'GC07P026846', 'score': 0.37}, {'connected_gene': 'RPL7AP38', 'score': 0.21}, {'connected_gene': 'SKAP2', 'score': 0.12}]
chr7	GH07I027210	27210239	27211438	0.83	[{'connected_gene': 'ENSG00000253308', 'score': 11.75}, {'connected_gene': 'EVX1', 'score': 11.75}, {'connected_gene': 'EVX1-AS', 'score': 11.73}, {'connected_gene': 'HOXA11-AS', 'score': 11.72}, {'connected_gene': 'HOXA11', 'score': 11.72}, {'connected_gene': 'HOXA10', 'score': 11.71}, {'connected_gene': 'HOXA9', 'score': 11.69}, {'connected_gene': 'HOXA1', 'score': 9.33}, {'connected_gene': 'HOTAIRM1', 'score': 9.32}, {'connected_gene': 'HOXA13', 'score': 5.9}, {'connected_gene': 'ENSG00000277553', 'score': 0.77}]
chr7	GH07I027213	27213663	27213798	0.37	[{'connected_gene': 'ENSG00000253308', 'score': 11.77}, {'connected_gene': 'EVX1', 'score': 11.77}, {'connected_gene': 'EVX1-AS', 'score': 11.75}, {'connected_gene': 'HOXA11-AS', 'score': 11.72}, {'connected_gene': 'HOXA11', 'score': 11.72}, {'connected_gene': 'HOXA10', 'score': 11.71}, {'connected_gene': 'HOXA9', 'score': 11.69}, {'connected_gene': 'HOTAIRM1', 'score': 9.32}, {'connected_gene': 'HOXA1', 'score': 9.32}, {'connected_gene': 'ENSG00000277553', 'score': 0.44}]