PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000443950	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892279]]	[[43882084, 43883332]]
ENST00000544000	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892038], [43892632, 43892794]]	[[43882084, 43883332]]
ENST00000357065	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892038], [43903164, 43903267]]	[[43882084, 43883332]]
ENST00000356053	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892038], [43904174, 43904330]]	[[43882084, 43883332]]
ENST00000337970	[[43881469, 43883384], [43890077, 43890136], [43891903, 43892038], [43904537, 43904614]]	[[43882084, 43883332]]
ENST00000477108	[[43883036, 43883384], [43890077, 43890136], [43891903, 43892038], [43892632, 43892726]]	None
ENST00000498176	[[43883090, 43883384], [43890077, 43890136], [43891903, 43892265]]	None
NM_001098208	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892279]]	[[43882084, 43883332]]
NM_001098207	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892038], [43892632, 43892794]]	[[43882084, 43883332]]
NM_001098206	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892038], [43903164, 43903299]]	[[43882084, 43883332]]
NM_001098205	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892038], [43904174, 43904332]]	[[43882084, 43883332]]
NM_004966	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892038], [43904537, 43904656]]	[[43882084, 43883332]]
NM_001098204	[[43881064, 43883384], [43890077, 43890136], [43891903, 43892038], [43904578, 43904696]]	[[43882084, 43883332]]

Promoter

Chrom	Start	End	Description
chr10	43882118	43882131	CAGE_peak_9_at_HNRNPF_5end
chr10	43882180	43882195	CAGE_peak_8_at_HNRNPF_5end
chr10	43882294	43882310	CAGE_peak_10_at_HNRNPF_5end
chr10	43882591	43882618	CAGE_peak_7_at_HNRNPF_5end
chr10	43882745	43882769	CAGE_peak_13_at_HNRNPF_5end
chr10	43892175	43892263	CAGE_peak_4_at_HNRNPF_5end
chr10	43892287	43892296	CAGE_peak_25_at_HNRNPF_5end
chr10	43892638	43892660	CAGE_peak_6_at_HNRNPF_5end
chr10	43892668	43892762	CAGE_peak_3_at_HNRNPF_5end
chr10	43903217	43903241	CAGE_peak_2_at_HNRNPF_5end
chr10	43904235	43904322	CAGE_peak_5_at_HNRNPF_5end
chr10	43904608	43904640	CAGE_peak_1_at_HNRNPF_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I042781	42781680	42783841	2.14	[{'connected_gene': 'BMS1', 'score': 609.81}, {'connected_gene': 'GC10M042779', 'score': 550.77}, {'connected_gene': 'ZNF32-AS2', 'score': 45.72}, {'connected_gene': 'ENSG00000273008', 'score': 42.03}, {'connected_gene': 'HNRNPF', 'score': 41.87}, {'connected_gene': 'EIF3LP2', 'score': 37.28}, {'connected_gene': 'ZNF32-AS1', 'score': 33.47}, {'connected_gene': 'ZNF37BP', 'score': 30.76}, {'connected_gene': 'ZNF32', 'score': 27.06}, {'connected_gene': 'LOC100130881', 'score': 23.5}, {'connected_gene': 'ZNF239', 'score': 21.23}, {'connected_gene': 'LOC441666', 'score': 15.79}, {'connected_gene': 'ZNF487', 'score': 10.12}, {'connected_gene': 'LINC00839', 'score': 7.02}, {'connected_gene': 'ENSG00000259869', 'score': 6.54}, {'connected_gene': 'GC10M042762', 'score': 0.39}]
chr10	GH10I042636	42636846	42639870	2.27	[{'connected_gene': 'ZNF33B', 'score': 570.12}, {'connected_gene': 'LOC105378268', 'score': 550.77}, {'connected_gene': 'PIR61818', 'score': 550.77}, {'connected_gene': 'LINC00839', 'score': 19.95}, {'connected_gene': 'HNRNPF', 'score': 12.08}]
chr10	GH10I043120	43120301	43122682	1.31	[{'connected_gene': 'CSGALNACT2', 'score': 63.45}, {'connected_gene': 'HNRNPF', 'score': 4.22}, {'connected_gene': 'GC10M043121', 'score': 0.77}, {'connected_gene': 'PIR60596', 'score': 0.34}, {'connected_gene': 'RET', 'score': 0.26}]
chr10	GH10I043136	43136907	43141233	2.52	[{'connected_gene': 'CSGALNACT2', 'score': 640.45}, {'connected_gene': 'ENSG00000273008', 'score': 550.77}, {'connected_gene': 'HNRNPF', 'score': 16.5}, {'connected_gene': 'RASGEF1A', 'score': 9.76}, {'connected_gene': 'GC10P043154', 'score': 0.39}]
chr10	GH10I043304	43304401	43305400	1.08	[{'connected_gene': 'CSGALNACT2', 'score': 9.04}, {'connected_gene': 'HNRNPF', 'score': 7.07}, {'connected_gene': 'LOC105378271', 'score': 0.39}, {'connected_gene': 'RASGEF1A', 'score': 0.28}]
chr10	GH10I043392	43392519	43410859	2.83	[{'connected_gene': 'HNRNPF', 'score': 590.81}, {'connected_gene': 'EIF3LP2', 'score': 52.89}, {'connected_gene': 'BMS1', 'score': 52.73}, {'connected_gene': 'ZNF32-AS2', 'score': 46.32}, {'connected_gene': 'HNRNPA3P1', 'score': 44.36}, {'connected_gene': 'ZNF37BP', 'score': 34.94}, {'connected_gene': 'ZNF33B', 'score': 32.19}, {'connected_gene': 'ZNF32-AS1', 'score': 31.5}, {'connected_gene': 'ZNF32', 'score': 20.89}, {'connected_gene': 'LOC105378272', 'score': 16.36}, {'connected_gene': 'ENSG00000273008', 'score': 15.39}, {'connected_gene': 'ZNF239', 'score': 13.19}, {'connected_gene': 'RASGEF1A', 'score': 4.7}, {'connected_gene': 'PIR56810', 'score': 0.39}]
chr10	GH10I043385	43384713	43384762	0.92	[{'connected_gene': 'HNRNPF', 'score': 22.88}, {'connected_gene': 'HNRNPA3P1', 'score': 20.46}, {'connected_gene': 'EIF3LP2', 'score': 20.05}, {'connected_gene': 'RASGEF1A', 'score': 11.21}, {'connected_gene': 'BMS1', 'score': 9.65}, {'connected_gene': 'PIR56810', 'score': 0.77}, {'connected_gene': 'FXYD4', 'score': 0.39}]
chr10	GH10I043416	43416508	43422578	2.07	[{'connected_gene': 'LOC105378272', 'score': 566.76}, {'connected_gene': 'GC10P043423', 'score': 550.77}, {'connected_gene': 'BMS1', 'score': 25.25}, {'connected_gene': 'ZNF32-AS2', 'score': 13.27}, {'connected_gene': 'EIF3LP2', 'score': 11.15}, {'connected_gene': 'ZNF33B', 'score': 9.86}, {'connected_gene': 'ZNF239', 'score': 4.36}, {'connected_gene': 'ENSG00000259869', 'score': 4.1}, {'connected_gene': 'HNRNPF', 'score': 1.46}, {'connected_gene': 'CSGALNACT2', 'score': 1.4}, {'connected_gene': 'GC10M043420', 'score': 0.77}, {'connected_gene': 'SNORD3J', 'score': 0.77}]
chr10	GH10I043451	43451526	43457286	1.92	[{'connected_gene': 'LOC105378272', 'score': 15.99}, {'connected_gene': 'HNRNPF', 'score': 12.3}, {'connected_gene': 'HNRNPA3P1', 'score': 12.2}, {'connected_gene': 'RNU7-193P', 'score': 0.77}, {'connected_gene': 'ZNF487', 'score': 0.37}]
chr10	GH10I043391	43391313	43392131	0.52	[{'connected_gene': 'LOC105378272', 'score': 15.11}, {'connected_gene': 'PIR56810', 'score': 0.77}, {'connected_gene': 'HNRNPF', 'score': 0.37}]
chr10	GH10I043389	43389533	43391166	0.94	[{'connected_gene': 'LOC105378272', 'score': 10.29}, {'connected_gene': 'RASGEF1A', 'score': 4.44}, {'connected_gene': 'PIR56810', 'score': 0.77}, {'connected_gene': 'HNRNPF', 'score': 0.37}]
chr10	GH10I044043	44043891	44045823	0.56	[{'connected_gene': 'ENSG00000229116', 'score': 10.41}, {'connected_gene': 'CXCL12', 'score': 9.97}, {'connected_gene': 'HNRNPF', 'score': 4.16}, {'connected_gene': 'PIR37397', 'score': 0.13}, {'connected_gene': 'ENSG00000237590', 'score': 0.08}]
chr10	GH10I043384	43384879	43389493	0.81	[{'connected_gene': 'PIR56810', 'score': 550.77}, {'connected_gene': 'LOC105378272', 'score': 28.85}, {'connected_gene': 'HNRNPF', 'score': 22.88}, {'connected_gene': 'HNRNPA3P1', 'score': 20.46}, {'connected_gene': 'EIF3LP2', 'score': 20.04}, {'connected_gene': 'SNORD3J', 'score': 12.86}, {'connected_gene': 'ZNF487', 'score': 12.81}, {'connected_gene': 'RNU7-193P', 'score': 12.01}, {'connected_gene': 'RASGEF1A', 'score': 11.21}, {'connected_gene': 'BMS1', 'score': 9.65}, {'connected_gene': 'ZNF239', 'score': 4.67}, {'connected_gene': 'FXYD4', 'score': 0.37}]