Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000560699 [[53049636, 53050044], [53072792, 53073380]] [[53049870, 53050044], [53072792, 53072819]]
ENST00000305901 [[53049637, 53050044], [53080976, 53082209]] [[53049751, 53050044], [53080976, 53082081]]
ENST00000561401 [[53049637, 53050044], [53083225, 53083273]] None
ENST00000570208 [[53077921, 53078166], [53079203, 53079324], [53079957, 53080711], [53080976, 53081145], [53081244, 53081593]] [[53080682, 53080711], [53080976, 53081145], [53081244, 53081593]]
NR_073510 [[53049159, 53050044], [53072792, 53073081]] None
NM_004498 [[53049159, 53050044], [53080976, 53082209]] [[53049751, 53050044], [53080976, 53082081]]
Promoter
Chrom Start End Description
chr15 53082178 53082190 CAGE_peak_3_at_ONECUT1_5end
chr15 53082521 53082549 CAGE_peak_1_at_ONECUT1_5end
chr15 53082587 53082599 CAGE_peak_2_at_ONECUT1_5end
chr15 53083268 53083283 CAGE_peak_5_at_ONECUT1_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr15 GH15I052789 52789625 52790820 2.05 [{'connected_gene': 'ONECUT1', 'score': 550.77}, {'connected_gene': 'LOC105370824', 'score': 550.77}, {'connected_gene': 'LOC101928499', 'score': 4.87}, {'connected_gene': 'GC15P052780', 'score': 0.44}]
chr15 GH15I052786 52784572 52789059 1.24 [{'connected_gene': 'ONECUT1', 'score': 13.5}, {'connected_gene': 'LOC105370824', 'score': 0.77}, {'connected_gene': 'GC15P052780', 'score': 0.44}]
chr15 GH15I052804 52803453 52803773 0.93 [{'connected_gene': 'LINC02490', 'score': 550.77}, {'connected_gene': 'ONECUT1', 'score': 17.28}, {'connected_gene': 'RNU2-53P', 'score': 9.65}, {'connected_gene': 'LOC101928499', 'score': 0.77}, {'connected_gene': 'PIR33850', 'score': 0.44}, {'connected_gene': 'GC15P052795', 'score': 0.44}]
chr15 GH15I052784 52784024 52784253 0.74 [{'connected_gene': 'LOC101928499', 'score': 5.11}, {'connected_gene': 'GC15P052780', 'score': 0.77}, {'connected_gene': 'ONECUT1', 'score': 0.44}, {'connected_gene': 'LOC105370824', 'score': 0.44}]
chr15 GH15I052783 52783444 52783673 0.76 [{'connected_gene': 'GC15P052780', 'score': 0.77}, {'connected_gene': 'ONECUT1', 'score': 0.44}, {'connected_gene': 'LOC105370824', 'score': 0.44}]
chr15 GH15I052785 52784404 52784553 0.63 [{'connected_gene': 'GC15P052780', 'score': 0.77}, {'connected_gene': 'ONECUT1', 'score': 0.44}, {'connected_gene': 'LOC105370824', 'score': 0.44}]
chr15 GH15I052778 52778604 52778773 0.43 [{'connected_gene': 'GC15P052780', 'score': 550.77}, {'connected_gene': 'ONECUT1', 'score': 0.39}, {'connected_gene': 'GC15P052725', 'score': 0.23}]
chr15 GH15I052765 52765884 52766033 0.43 [{'connected_gene': 'GC15P052780', 'score': 0.39}, {'connected_gene': 'ONECUT1', 'score': 0.31}, {'connected_gene': 'GC15P052725', 'score': 0.26}]
chr15 GH15I052780 52780135 52781200 1.06 [{'connected_gene': 'GC15P052780', 'score': 550.77}, {'connected_gene': 'LOC101928499', 'score': 5.45}, {'connected_gene': 'LOC105370824', 'score': 0.44}, {'connected_gene': 'ONECUT1', 'score': 0.39}]