PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000511348	[[100869242, 100870897], [100871324, 100871512]]	None
ENST00000511203	[[100869244, 100870097], [100870429, 100871456]]	None
ENST00000296417	[[100869244, 100869680], [100869967, 100870097], [100870429, 100870543], [100870819, 100870897], [100871324, 100871545]]	[[100869618, 100869680], [100869967, 100870097], [100870429, 100870543], [100870819, 100870897], [100871324, 100871327]]
ENST00000511319	[[100869276, 100869680], [100869967, 100870097], [100870429, 100870543], [100870819, 100871425]]	None
ENST00000529158	[[100869328, 100869680], [100869967, 100870097], [100870429, 100870543], [100870819, 100870897], [100871404, 100871456]]	None
ENST00000527366	[[100869934, 100870097], [100870429, 100870536], [100870819, 100870897], [100871324, 100871411]]	None
NM_002106	[[100869243, 100869680], [100869967, 100870097], [100870429, 100870543], [100870819, 100870897], [100871324, 100871512]]	[[100869618, 100869680], [100869967, 100870097], [100870429, 100870543], [100870819, 100870897], [100871324, 100871327]]

Promoter

Chrom	Start	End	Description
chr4	100871420	100871440	CAGE_peak_1_at_H2AFZ_5end
chr4	100871459	100871483	CAGE_peak_2_at_H2AFZ_5end
chr4	100871500	100871501	CAGE_peak_5_at_H2AFZ_5end
chr4	100871506	100871517	CAGE_peak_3_at_H2AFZ_5end
chr4	100871692	100871697	CAGE_peak_8_at_H2AFZ_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I099893	99893122	99895379	1.96	[{'connected_gene': 'LAMTOR3', 'score': 550.77}, {'connected_gene': 'DNAJB14', 'score': 23.39}, {'connected_gene': 'LOC256880', 'score': 12.13}, {'connected_gene': 'H2AFZ', 'score': 12.13}, {'connected_gene': 'MTTP', 'score': 9.98}, {'connected_gene': 'TRMT10A', 'score': 9.98}, {'connected_gene': 'DAPP1', 'score': 4.18}, {'connected_gene': 'ENSG00000279913', 'score': 0.23}]
chr4	GH04I099862	99862869	99864527	0.71	[{'connected_gene': 'DNAJB14', 'score': 20.58}, {'connected_gene': 'DAPP1', 'score': 11.71}, {'connected_gene': 'LOC256880', 'score': 11.49}, {'connected_gene': 'H2AFZ', 'score': 11.49}, {'connected_gene': 'LAMTOR3', 'score': 9.89}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099855	99855201	99858200	1.05	[{'connected_gene': 'DNAJB14', 'score': 20.33}, {'connected_gene': 'DAPP1', 'score': 12.22}, {'connected_gene': 'LOC256880', 'score': 11.46}, {'connected_gene': 'H2AFZ', 'score': 11.46}, {'connected_gene': 'ENSG00000279913', 'score': 0.39}, {'connected_gene': 'LAMTOR3', 'score': 0.28}]
chr4	GH04I099944	99944875	99951427	2.11	[{'connected_gene': 'DNAJB14', 'score': 562.96}, {'connected_gene': 'LOC256880', 'score': 550.77}, {'connected_gene': 'H2AFZ', 'score': 550.77}, {'connected_gene': 'LAMTOR3', 'score': 10.29}, {'connected_gene': 'DAPP1', 'score': 6.41}]
chr4	GH04I099827	99827064	99828974	0.77	[{'connected_gene': 'DNAJB14', 'score': 10.68}, {'connected_gene': 'LOC256880', 'score': 10.68}, {'connected_gene': 'H2AFZ', 'score': 10.68}, {'connected_gene': 'MTTP', 'score': 10.28}, {'connected_gene': 'TRMT10A', 'score': 10.28}, {'connected_gene': 'LAMTOR3', 'score': 9.71}, {'connected_gene': 'DAPP1', 'score': 8.89}, {'connected_gene': 'LOC100507053', 'score': 5.45}, {'connected_gene': 'LOC285556', 'score': 0.44}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099917	99917860	99920089	0.38	[{'connected_gene': 'DNAJB14', 'score': 24.07}, {'connected_gene': 'LOC256880', 'score': 12.63}, {'connected_gene': 'H2AFZ', 'score': 12.63}, {'connected_gene': 'DAPP1', 'score': 7.97}, {'connected_gene': 'ENSG00000279098', 'score': 0.34}, {'connected_gene': 'LAMTOR3', 'score': 0.34}]
chr4	GH04I099810	99810416	99810693	0.22	[{'connected_gene': 'MTTP', 'score': 10.88}, {'connected_gene': 'TRMT10A', 'score': 10.88}, {'connected_gene': 'LOC256880', 'score': 10.5}, {'connected_gene': 'H2AFZ', 'score': 10.5}, {'connected_gene': 'DNAJB14', 'score': 10.5}, {'connected_gene': 'DAPP1', 'score': 8.77}, {'connected_gene': 'LOC285556', 'score': 0.39}, {'connected_gene': 'ENSG00000248676', 'score': 0.09}]
chr4	GH04I099811	99811904	99812013	0.59	[{'connected_gene': 'MTTP', 'score': 10.88}, {'connected_gene': 'TRMT10A', 'score': 10.88}, {'connected_gene': 'LOC256880', 'score': 10.5}, {'connected_gene': 'H2AFZ', 'score': 10.5}, {'connected_gene': 'DNAJB14', 'score': 10.5}, {'connected_gene': 'DAPP1', 'score': 0.77}, {'connected_gene': 'LOC285556', 'score': 0.39}, {'connected_gene': 'ENSG00000248676', 'score': 0.09}]
chr4	GH04I099824	99824442	99826151	0.58	[{'connected_gene': 'H2AFZ', 'score': 11.29}, {'connected_gene': 'LOC256880', 'score': 11.28}, {'connected_gene': 'DNAJB14', 'score': 11.28}, {'connected_gene': 'MTTP', 'score': 11.03}, {'connected_gene': 'TRMT10A', 'score': 11.03}, {'connected_gene': 'LAMTOR3', 'score': 9.2}, {'connected_gene': 'DAPP1', 'score': 8.93}, {'connected_gene': 'LOC285556', 'score': 0.77}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099819	99819836	99823026	1.3	[{'connected_gene': 'LOC285556', 'score': 550.77}, {'connected_gene': 'DNAJB14', 'score': 17.2}, {'connected_gene': 'TRMT10A', 'score': 13.12}, {'connected_gene': 'DAPP1', 'score': 12.77}, {'connected_gene': 'H2AFZ', 'score': 12.4}, {'connected_gene': 'MTTP', 'score': 11.03}, {'connected_gene': 'LOC256880', 'score': 10.59}, {'connected_gene': 'LAMTOR3', 'score': 10.53}, {'connected_gene': 'DDIT4L', 'score': 2.39}]
chr4	GH04I099814	99814898	99818958	2.23	[{'connected_gene': 'DAPP1', 'score': 564.34}, {'connected_gene': 'TRMT10A', 'score': 12.27}, {'connected_gene': 'MTTP', 'score': 10.72}, {'connected_gene': 'DNAJB14', 'score': 10.59}, {'connected_gene': 'LOC256880', 'score': 10.58}, {'connected_gene': 'H2AFZ', 'score': 10.58}, {'connected_gene': 'LAMTOR3', 'score': 6.71}, {'connected_gene': 'LOC285556', 'score': 0.44}]
chr4	GH04I099868	99868008	99868681	0.31	[{'connected_gene': 'DAPP1', 'score': 11.69}, {'connected_gene': 'DNAJB14', 'score': 11.5}, {'connected_gene': 'LOC256880', 'score': 11.5}, {'connected_gene': 'H2AFZ', 'score': 11.5}, {'connected_gene': 'ENSG00000279913', 'score': 0.34}, {'connected_gene': 'LAMTOR3', 'score': 0.31}]
chr4	GH04I099864	99864567	99865892	0.31	[{'connected_gene': 'DAPP1', 'score': 11.71}, {'connected_gene': 'LOC256880', 'score': 11.5}, {'connected_gene': 'DNAJB14', 'score': 11.5}, {'connected_gene': 'H2AFZ', 'score': 11.49}, {'connected_gene': 'ENSG00000279913', 'score': 0.34}, {'connected_gene': 'LAMTOR3', 'score': 0.31}]
chr4	GH04I099966	99966084	99966221	0.31	[{'connected_gene': 'LOC256880', 'score': 0.37}, {'connected_gene': 'H2AFZ', 'score': 0.37}, {'connected_gene': 'LOC644721', 'score': 0.31}]
chr4	GH04I099967	99967964	99969064	0.54	[{'connected_gene': 'LOC256880', 'score': 0.37}, {'connected_gene': 'H2AFZ', 'score': 0.37}, {'connected_gene': 'LOC644721', 'score': 0.34}]
chr4	GH04I100184	100184924	100185048	0.22	[{'connected_gene': 'DDIT4L', 'score': 10.96}, {'connected_gene': 'H2AFZ', 'score': 3.22}, {'connected_gene': 'LOC101929353', 'score': 0.44}, {'connected_gene': 'DYNLL1P6', 'score': 0.11}, {'connected_gene': 'LOC256880', 'score': 0.07}]