PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000358615	[[144792019, 144793405], [144797898, 144798008], [144801563, 144801662], [144826623, 144826712]]	[[144797907, 144798008], [144801563, 144801662], [144826623, 144826660]]
ENST00000506264	[[144792048, 144793405], [144794509, 144794628], [144801563, 144801662], [144826623, 144826672]]	[[144794584, 144794628], [144801563, 144801662], [144826623, 144826660]]
ENST00000437468	[[144796465, 144796662], [144797898, 144798008], [144801563, 144801662], [144826623, 144826716]]	[[144797907, 144798008], [144801563, 144801662], [144826623, 144826660]]
NM_198682	[[144792018, 144793405], [144797898, 144798008], [144801563, 144801662], [144826623, 144826716]]	[[144797907, 144798008], [144801563, 144801662], [144826623, 144826660]]
NM_002102	[[144796467, 144796662], [144797898, 144798008], [144801563, 144801662], [144826623, 144826716]]	[[144797907, 144798008], [144801563, 144801662], [144826623, 144826660]]

Promoter

Chrom	Start	End	Description
chr4	144826682	144826716	CAGE_peak_1_at_GYPE_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I143905	143905549	143905608	1.18	[{'connected_gene': 'GYPE', 'score': 550.77}, {'connected_gene': 'FREM3', 'score': 10.94}, {'connected_gene': 'LOC100420464', 'score': 0.44}, {'connected_gene': 'LOC101927636', 'score': 0.05}]
chr4	GH04I144104	144104892	144105065	0.85	[{'connected_gene': 'GYPA', 'score': 32.63}, {'connected_gene': 'GYPE', 'score': 31.93}, {'connected_gene': 'GYPB', 'score': 21.98}, {'connected_gene': 'LOC105377460', 'score': 0.34}, {'connected_gene': 'LOC105377461', 'score': 0.14}, {'connected_gene': 'LOC101927636', 'score': 0.03}]
chr4	GH04I143910	143910601	143912601	1.1	[{'connected_gene': 'LOC100420464', 'score': 550.77}, {'connected_gene': 'LOC100419356', 'score': 18.54}, {'connected_gene': 'FREM3', 'score': 10.93}, {'connected_gene': 'GYPE', 'score': 4.67}, {'connected_gene': 'LOC101927636', 'score': 0.05}]
chr4	GH04I143984	143984403	143984671	0.22	[{'connected_gene': 'LOC100419356', 'score': 15.93}, {'connected_gene': 'GYPE', 'score': 15.39}, {'connected_gene': 'GYPA', 'score': 15.23}, {'connected_gene': 'GYPB', 'score': 11.8}, {'connected_gene': 'PIR47279', 'score': 0.19}, {'connected_gene': 'LOC101927636', 'score': 0.04}]
chr4	GH04I143986	143986228	143986377	0.2	[{'connected_gene': 'LOC100419356', 'score': 15.65}, {'connected_gene': 'FREM3', 'score': 10.69}, {'connected_gene': 'GYPE', 'score': 5.02}, {'connected_gene': 'GYPB', 'score': 0.29}, {'connected_gene': 'PIR47279', 'score': 0.19}, {'connected_gene': 'LOC101927636', 'score': 0.04}]
chr4	GH04I143854	143854485	143855480	0.88	[{'connected_gene': 'LOC100419356', 'score': 17.46}, {'connected_gene': 'LOC101927636', 'score': 4.13}, {'connected_gene': 'RPSAP36', 'score': 4.06}, {'connected_gene': 'LOC105377459', 'score': 0.39}, {'connected_gene': 'GYPE', 'score': 0.23}]