PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366988	[[212606228, 212606462], [212615906, 212615967], [212617680, 212617784], [212619171, 212619714]]	[[212606285, 212606462], [212615906, 212615967], [212617680, 212617784], [212619171, 212619348]]
ENST00000479589	[[212606264, 212606462], [212617680, 212617784], [212619171, 212619714]]	None
ENST00000473900	[[212606314, 212606462], [212615887, 212615967], [212617680, 212617784], [212619171, 212619714]]	None
ENST00000472389	[[212606332, 212606462], [212608046, 212608375]]	None
NR_026598	[[212606228, 212606462], [212617680, 212617784], [212619171, 212619721]]	None
NM_013349	[[212606228, 212606462], [212615906, 212615967], [212617680, 212617784], [212619171, 212619721]]	[[212606285, 212606462], [212615906, 212615967], [212617680, 212617784], [212619171, 212619348]]

Promoter

Chrom	Start	End	Description
chr1	212606206	212606217	CAGE_peak_3_at_NENF_5end
chr1	212606219	212606230	CAGE_peak_2_at_NENF_5end
chr1	212606240	212606284	CAGE_peak_1_at_NENF_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I212461	212461928	212462851	0.2	[{'connected_gene': 'TMEM206', 'score': 15.9}, {'connected_gene': 'BATF3', 'score': 10.07}, {'connected_gene': 'LOC105372907', 'score': 0.39}, {'connected_gene': 'NENF', 'score': 0.31}]
chr1	GH01I212457	212457879	212458028	0.85	[{'connected_gene': 'TMEM206', 'score': 11.5}, {'connected_gene': 'ATF3', 'score': 10.83}, {'connected_gene': 'ENSG00000212187', 'score': 10.35}, {'connected_gene': 'BATF3', 'score': 9.98}, {'connected_gene': 'LOC105372907', 'score': 0.39}, {'connected_gene': 'NENF', 'score': 0.31}]
chr1	GH01I212455	212455479	212456865	1.2	[{'connected_gene': 'TMEM206', 'score': 23.1}, {'connected_gene': 'ATF3', 'score': 10.83}, {'connected_gene': 'ENSG00000212187', 'score': 10.35}, {'connected_gene': 'BATF3', 'score': 9.98}, {'connected_gene': 'LOC105372907', 'score': 0.37}, {'connected_gene': 'NENF', 'score': 0.34}]
chr1	GH01I212458	212458709	212461591	0.63	[{'connected_gene': 'TMEM206', 'score': 26.12}, {'connected_gene': 'ATF3', 'score': 10.83}, {'connected_gene': 'ENSG00000212187', 'score': 10.35}, {'connected_gene': 'BATF3', 'score': 10.35}, {'connected_gene': 'LOC101929541', 'score': 7.31}, {'connected_gene': 'NENF', 'score': 6.1}, {'connected_gene': 'LOC105372907', 'score': 0.39}]
chr1	GH01I212464	212464045	212465703	0.43	[{'connected_gene': 'TMEM206', 'score': 24.29}, {'connected_gene': 'LOC105372907', 'score': 11.23}, {'connected_gene': 'ATF3', 'score': 11.04}, {'connected_gene': 'BATF3', 'score': 10.79}, {'connected_gene': 'PPP2R5A', 'score': 5.9}, {'connected_gene': 'NENF', 'score': 0.29}]
chr1	GH01I212452	212452416	212453897	0.72	[{'connected_gene': 'TMEM206', 'score': 20.98}, {'connected_gene': 'LOC105372907', 'score': 11.73}, {'connected_gene': 'ATF3', 'score': 10.82}, {'connected_gene': 'ENSG00000212187', 'score': 10.35}, {'connected_gene': 'BATF3', 'score': 9.98}, {'connected_gene': 'NENF', 'score': 0.34}]
chr1	GH01I212469	212469639	212470921	1.23	[{'connected_gene': 'NENF', 'score': 12.1}, {'connected_gene': 'FAM71A', 'score': 11.48}, {'connected_gene': 'ENSG00000235862', 'score': 11.48}, {'connected_gene': 'ATF3', 'score': 11.41}, {'connected_gene': 'TMEM206', 'score': 11.17}, {'connected_gene': 'BATF3', 'score': 10.93}, {'connected_gene': 'LOC105372907', 'score': 10.52}, {'connected_gene': 'ENSG00000212187', 'score': 9.83}, {'connected_gene': 'VASH2', 'score': 9.66}]
chr1	GH01I212436	212436938	212438492	0.65	[{'connected_gene': 'NENF', 'score': 9.76}, {'connected_gene': 'LOC105372907', 'score': 0.28}]
chr1	GH01I212440	212440358	212441558	0.52	[{'connected_gene': 'NENF', 'score': 9.65}, {'connected_gene': 'LOC105372907', 'score': 0.29}]
chr1	GH01I212430	212430081	212434264	2.19	[{'connected_gene': 'NENF', 'score': 550.77}, {'connected_gene': 'LOC105372906', 'score': 550.77}, {'connected_gene': 'LOC101929541', 'score': 32.97}, {'connected_gene': 'TMEM206', 'score': 20.27}, {'connected_gene': 'PPP2R5A', 'score': 15.39}, {'connected_gene': 'DTL', 'score': 10.0}, {'connected_gene': 'INTS7', 'score': 10.0}, {'connected_gene': 'ENSG00000212187', 'score': 9.55}, {'connected_gene': 'BATF3', 'score': 9.39}]
chr1	GH01I212449	212449950	212451903	0.74	[{'connected_gene': 'NENF', 'score': 8.96}, {'connected_gene': 'LINC01740', 'score': 8.78}, {'connected_gene': 'TMEM206', 'score': 4.99}, {'connected_gene': 'LOC105372907', 'score': 0.34}]
chr1	GH01I212466	212466310	212468400	1.03	[{'connected_gene': 'LOC105372907', 'score': 16.16}, {'connected_gene': 'TMEM206', 'score': 11.17}, {'connected_gene': 'ATF3', 'score': 11.04}, {'connected_gene': 'BATF3', 'score': 10.8}, {'connected_gene': 'NENF', 'score': 0.29}]
chr1	GH01I212497	212497819	212498942	0.92	[{'connected_gene': 'LOC105372907', 'score': 39.5}, {'connected_gene': 'ATF3', 'score': 11.3}, {'connected_gene': 'NENF', 'score': 11.2}, {'connected_gene': 'BATF3', 'score': 10.15}, {'connected_gene': 'TMEM206', 'score': 9.84}, {'connected_gene': 'LOC105372908', 'score': 0.37}]
chr1	GH01I212476	212476947	212478598	1.59	[{'connected_gene': 'LOC105372907', 'score': 42.52}, {'connected_gene': 'ATF3', 'score': 27.74}, {'connected_gene': 'NENF', 'score': 11.92}, {'connected_gene': 'FAM71A', 'score': 11.49}, {'connected_gene': 'ENSG00000235862', 'score': 11.49}, {'connected_gene': 'BATF3', 'score': 10.93}, {'connected_gene': 'TMEM206', 'score': 10.31}, {'connected_gene': 'RPL21P28', 'score': 10.09}, {'connected_gene': 'ENSG00000212187', 'score': 9.83}, {'connected_gene': 'VASH2', 'score': 9.66}, {'connected_gene': 'LOC105372908', 'score': 0.28}]
chr1	GH01I212474	212474174	212475868	0.46	[{'connected_gene': 'LOC105372907', 'score': 16.09}, {'connected_gene': 'NENF', 'score': 11.92}, {'connected_gene': 'FAM71A', 'score': 11.49}, {'connected_gene': 'ENSG00000235862', 'score': 11.48}, {'connected_gene': 'ATF3', 'score': 11.42}, {'connected_gene': 'BATF3', 'score': 10.93}, {'connected_gene': 'TMEM206', 'score': 10.32}, {'connected_gene': 'ENSG00000212187', 'score': 9.83}, {'connected_gene': 'VASH2', 'score': 9.66}, {'connected_gene': 'ENSG00000260805', 'score': 5.54}, {'connected_gene': 'LOC105372908', 'score': 0.28}]
chr1	GH01I212471	212471244	212473023	0.31	[{'connected_gene': 'LOC105372907', 'score': 598.66}, {'connected_gene': 'NENF', 'score': 11.93}, {'connected_gene': 'FAM71A', 'score': 11.48}, {'connected_gene': 'ENSG00000235862', 'score': 11.48}, {'connected_gene': 'ATF3', 'score': 11.42}, {'connected_gene': 'BATF3', 'score': 10.93}, {'connected_gene': 'TMEM206', 'score': 10.32}, {'connected_gene': 'ENSG00000212187', 'score': 9.83}, {'connected_gene': 'VASH2', 'score': 9.66}]
chr1	GH01I212445	212445286	212447273	0.43	[{'connected_gene': 'LOC105372907', 'score': 13.93}, {'connected_gene': 'NENF', 'score': 9.82}]
chr1	GH01I212448	212448909	212449763	0.2	[{'connected_gene': 'LOC101929541', 'score': 18.32}, {'connected_gene': 'NENF', 'score': 0.37}, {'connected_gene': 'LOC105372907', 'score': 0.34}]