PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000435336	[[2304074, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317940], [2393856, 2393944]]	[[2304074, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317875]]
ENST00000447136	[[2314750, 2314864], [2317734, 2317940], [2376750, 2376916], [2393856, 2393953]]	[[2314750, 2314864], [2317734, 2317875]]
ENST00000222990	[[2291404, 2294804], [2296508, 2296658], [2296999, 2297149], [2297369, 2297438], [2302864, 2302997], [2303932, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317940], [2353962, 2354099]]	[[2294690, 2294804], [2296508, 2296658], [2296999, 2297149], [2297369, 2297438], [2302864, 2302997], [2303932, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317940], [2353962, 2354056]]
ENST00000480807	[[2294674, 2294804], [2296508, 2296658], [2296999, 2297253]]	None
ENST00000479689	[[2297300, 2297438], [2302864, 2302997], [2303932, 2304093], [2309193, 2309274], [2311484, 2311531]]	None
ENST00000435060	[[2304000, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317940], [2349439, 2349581]]	[[2304000, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317940], [2349439, 2349491]]
ENST00000457286	[[2304027, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317940], [2338979, 2339072]]	[[2304027, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317875]]
ENST00000494722	[[2314594, 2314864], [2317734, 2317940], [2353962, 2354076]]	None
ENST00000419693	[[2317748, 2317940], [2347362, 2347585]]	[[2317748, 2317875]]
NM_013321	[[2291404, 2294804], [2296508, 2296658], [2296999, 2297149], [2297369, 2297438], [2302864, 2302997], [2303932, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317940], [2353962, 2354110]]	[[2294690, 2294804], [2296508, 2296658], [2296999, 2297149], [2297369, 2297438], [2302864, 2302997], [2303932, 2304093], [2309193, 2309274], [2311484, 2311606], [2314746, 2314864], [2317734, 2317940], [2353962, 2354056]]

Promoter

Chrom	Start	End	Description
chr7	2349568	2349576	CAGE_peak_9_at_SNX8_5end
chr7	2349579	2349594	CAGE_peak_7_at_SNX8_5end
chr7	2354000	2354086	CAGE_peak_1_at_SNX8_5end
chr7	2354104	2354115	CAGE_peak_2_at_SNX8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I002352	2352969	2356954	2.29	[{'connected_gene': 'EIF3B', 'score': 592.61}, {'connected_gene': 'SNX8', 'score': 550.77}, {'connected_gene': 'BRAT1', 'score': 22.59}, {'connected_gene': 'GC07M002353', 'score': 0.77}]
chr7	GH07I002167	2167826	2169258	0.76	[{'connected_gene': 'MAD1L1', 'score': 5.81}, {'connected_gene': 'SNX8', 'score': 4.44}, {'connected_gene': 'LOC105375126', 'score': 0.39}, {'connected_gene': 'GC07M002150', 'score': 0.39}]
chr7	GH07I002626	2626276	2642973	2.79	[{'connected_gene': 'TTYH3', 'score': 614.83}, {'connected_gene': 'LFNG', 'score': 16.06}, {'connected_gene': 'AMZ1', 'score': 12.61}, {'connected_gene': 'CHST12', 'score': 12.3}, {'connected_gene': 'BRAT1', 'score': 11.56}, {'connected_gene': 'EIF3B', 'score': 10.27}, {'connected_gene': 'IQCE', 'score': 6.61}, {'connected_gene': 'SNX8', 'score': 2.69}]
chr7	GH07I002606	2606744	2610361	1.27	[{'connected_gene': 'TTYH3', 'score': 29.52}, {'connected_gene': 'BRAT1', 'score': 23.92}, {'connected_gene': 'AMZ1', 'score': 12.33}, {'connected_gene': 'CHST12', 'score': 11.95}, {'connected_gene': 'IQCE', 'score': 8.82}, {'connected_gene': 'LFNG', 'score': 3.08}, {'connected_gene': 'SNX8', 'score': 2.28}, {'connected_gene': 'GC07P002574', 'score': 0.29}]
chr7	GH07I001919	1919148	1921111	1.42	[{'connected_gene': 'MAFK', 'score': 3.31}, {'connected_gene': 'SNX8', 'score': 2.2}, {'connected_gene': 'GC07M001848', 'score': 0.34}, {'connected_gene': 'GC07P001949', 'score': 0.31}, {'connected_gene': 'MAD1L1', 'score': 0.06}]
chr7	GH07I001950	1950791	1951915	1.23	[{'connected_gene': 'CHST12', 'score': 10.5}, {'connected_gene': 'MRM2', 'score': 10.41}, {'connected_gene': 'BRAT1', 'score': 10.12}, {'connected_gene': 'MAFK', 'score': 7.46}, {'connected_gene': 'SNX8', 'score': 4.87}, {'connected_gene': 'GC07P001949', 'score': 0.77}, {'connected_gene': 'GC07M001985', 'score': 0.28}, {'connected_gene': 'MAD1L1', 'score': 0.06}]
chr7	GH07I002451	2451151	2452975	1.09	[{'connected_gene': 'CHST12', 'score': 12.25}, {'connected_gene': 'BRAT1', 'score': 12.22}, {'connected_gene': 'IQCE', 'score': 12.22}, {'connected_gene': 'LOC645357', 'score': 12.2}, {'connected_gene': 'EIF3B', 'score': 12.16}, {'connected_gene': 'SNX8', 'score': 11.81}, {'connected_gene': 'TTYH3', 'score': 11.76}, {'connected_gene': 'AMZ1', 'score': 11.74}, {'connected_gene': 'LFNG', 'score': 7.44}, {'connected_gene': 'GRIFIN', 'score': 0.34}, {'connected_gene': 'GC07P002406', 'score': 0.25}]
chr7	GH07I002115	2115556	2117595	1.25	[{'connected_gene': 'NUDT1', 'score': 10.78}, {'connected_gene': 'LFNG', 'score': 8.7}, {'connected_gene': 'MRM2', 'score': 6.88}, {'connected_gene': 'EIF3B', 'score': 4.75}, {'connected_gene': 'SNX8', 'score': 3.49}, {'connected_gene': 'LOC105375127', 'score': 0.77}, {'connected_gene': 'GC07P002128', 'score': 0.39}, {'connected_gene': 'MAD1L1', 'score': 0.13}]
chr7	GH07I002236	2236423	2238754	1.28	[{'connected_gene': 'NUDT1', 'score': 17.19}, {'connected_gene': 'MRM2', 'score': 15.14}, {'connected_gene': 'LFNG', 'score': 5.88}, {'connected_gene': 'SNX8', 'score': 4.48}, {'connected_gene': 'MAD1L1', 'score': 0.77}]
chr7	GH07I002799	2799316	2799623	0.96	[{'connected_gene': 'LFNG', 'score': 6.29}, {'connected_gene': 'SNX8', 'score': 3.14}, {'connected_gene': 'GNA12', 'score': 1.67}, {'connected_gene': 'PIR32151', 'score': 0.34}, {'connected_gene': 'GC07M002729', 'score': 0.19}]
chr7	GH07I002018	2018002	2021159	1.42	[{'connected_gene': 'MRM2', 'score': 10.43}, {'connected_gene': 'PSMG3', 'score': 6.14}, {'connected_gene': 'NUDT1', 'score': 5.14}, {'connected_gene': 'SNX8', 'score': 3.42}, {'connected_gene': 'MAFK', 'score': 3.34}, {'connected_gene': 'GC07M001999', 'score': 0.37}, {'connected_gene': 'GC07M002088', 'score': 0.19}, {'connected_gene': 'MAD1L1', 'score': 0.08}]
chr7	GH07I002103	2103221	2113200	1.76	[{'connected_gene': 'MRM2', 'score': 10.08}, {'connected_gene': 'NUDT1', 'score': 8.06}, {'connected_gene': 'MAD1L1', 'score': 6.47}, {'connected_gene': 'LFNG', 'score': 3.23}, {'connected_gene': 'SNX8', 'score': 1.37}, {'connected_gene': 'LOC105375127', 'score': 0.44}, {'connected_gene': 'GC07P002097', 'score': 0.39}]
chr7	GH07I002317	2317030	2317298	0.39	[{'connected_gene': 'MRM2', 'score': 12.09}, {'connected_gene': 'NUDT1', 'score': 12.09}, {'connected_gene': 'MAD1L1', 'score': 12.07}, {'connected_gene': 'GC07P002305', 'score': 0.39}, {'connected_gene': 'GC07M002345', 'score': 0.29}, {'connected_gene': 'SNX8', 'score': 0.28}]
chr7	GH07I002241	2241219	2243532	2.03	[{'connected_gene': 'MRM2', 'score': 562.76}, {'connected_gene': 'PIR43450', 'score': 550.77}, {'connected_gene': 'NUDT1', 'score': 550.77}, {'connected_gene': 'BRAT1', 'score': 11.82}, {'connected_gene': 'EIF3B', 'score': 10.7}, {'connected_gene': 'SNX8', 'score': 5.59}]
chr7	GH07I002145	2145969	2146071	0.35	[{'connected_gene': 'MRM2', 'score': 10.46}, {'connected_gene': 'LFNG', 'score': 2.82}, {'connected_gene': 'SNX8', 'score': 1.54}, {'connected_gene': 'GC07P002150', 'score': 0.77}, {'connected_gene': 'GC07P002128', 'score': 0.37}, {'connected_gene': 'MAD1L1', 'score': 0.17}]
chr7	GH07I002266	2266426	2267231	0.99	[{'connected_gene': 'MRM2', 'score': 8.23}, {'connected_gene': 'SNX8', 'score': 7.21}, {'connected_gene': 'MAD1L1', 'score': 1.54}, {'connected_gene': 'GC07P002270', 'score': 0.77}, {'connected_gene': 'MIR6836', 'score': 0.44}]
chr7	GH07I002298	2298335	2302102	1.33	[{'connected_gene': 'MRM2', 'score': 20.7}, {'connected_gene': 'SNX8', 'score': 13.84}, {'connected_gene': 'NUDT1', 'score': 12.46}, {'connected_gene': 'MAD1L1', 'score': 12.45}, {'connected_gene': 'LFNG', 'score': 4.9}, {'connected_gene': 'GC07P002305', 'score': 0.44}, {'connected_gene': 'IMMP1LP3', 'score': 0.39}]
chr7	GH07I002261	2261166	2262773	1.11	[{'connected_gene': 'MRM2', 'score': 8.26}, {'connected_gene': 'SNX8', 'score': 6.87}, {'connected_gene': 'LFNG', 'score': 2.68}, {'connected_gene': 'MIR6836', 'score': 0.77}, {'connected_gene': 'GC07P002270', 'score': 0.44}]
chr7	GH07I002253	2251858	2252655	0.38	[{'connected_gene': 'MRM2', 'score': 8.04}, {'connected_gene': 'SNX8', 'score': 7.91}, {'connected_gene': 'PIR41829', 'score': 0.77}, {'connected_gene': 'MIR6836', 'score': 0.44}]
chr7	GH07I001943	1943774	1944185	0.57	[{'connected_gene': 'MRM2', 'score': 10.02}, {'connected_gene': 'TMEM184A', 'score': 6.29}, {'connected_gene': 'SNX8', 'score': 4.21}, {'connected_gene': 'GC07P001949', 'score': 0.44}, {'connected_gene': 'GC07M001848', 'score': 0.26}, {'connected_gene': 'MAD1L1', 'score': 0.06}]
chr7	GH07I002325	2325155	2325600	0.76	[{'connected_gene': 'SNX8', 'score': 17.29}, {'connected_gene': 'EIF3B', 'score': 12.67}, {'connected_gene': 'MRM2', 'score': 12.19}, {'connected_gene': 'NUDT1', 'score': 12.19}, {'connected_gene': 'MAD1L1', 'score': 12.18}, {'connected_gene': 'LOC645357', 'score': 11.8}, {'connected_gene': 'CHST12', 'score': 11.76}, {'connected_gene': 'LFNG', 'score': 1.47}, {'connected_gene': 'GC07P002305', 'score': 0.37}, {'connected_gene': 'GC07M002345', 'score': 0.34}]
chr7	GH07I002279	2279311	2282974	1	[{'connected_gene': 'SNX8', 'score': 7.27}, {'connected_gene': 'MICALL2', 'score': 6.58}, {'connected_gene': 'IMMP1LP3', 'score': 0.44}, {'connected_gene': 'GC07P002270', 'score': 0.39}]
chr7	GH07I002327	2327093	2327166	0.22	[{'connected_gene': 'SNX8', 'score': 4.77}, {'connected_gene': 'LFNG', 'score': 1.3}, {'connected_gene': 'GC07M002345', 'score': 0.34}, {'connected_gene': 'GC07P002305', 'score': 0.34}]
chr7	GH07I002309	2309426	2315131	2.32	[{'connected_gene': 'SNX8', 'score': 571.98}, {'connected_gene': 'MRM2', 'score': 12.35}, {'connected_gene': 'NUDT1', 'score': 12.35}, {'connected_gene': 'MAD1L1', 'score': 12.34}, {'connected_gene': 'CHST12', 'score': 10.61}, {'connected_gene': 'BRAT1', 'score': 10.16}, {'connected_gene': 'GC07P002305', 'score': 0.44}, {'connected_gene': 'GC07M002345', 'score': 0.28}]
chr7	GH07I002323	2323327	2323628	0.33	[{'connected_gene': 'SNX8', 'score': 14.29}, {'connected_gene': 'MRM2', 'score': 12.19}, {'connected_gene': 'NUDT1', 'score': 12.19}, {'connected_gene': 'MAD1L1', 'score': 12.18}, {'connected_gene': 'AMZ1', 'score': 1.62}, {'connected_gene': 'GC07P002305', 'score': 0.37}, {'connected_gene': 'GC07M002345', 'score': 0.34}]
chr7	GH07I002306	2306646	2308744	0.99	[{'connected_gene': 'SNX8', 'score': 14.63}, {'connected_gene': 'MRM2', 'score': 12.43}, {'connected_gene': 'NUDT1', 'score': 12.43}, {'connected_gene': 'MAD1L1', 'score': 12.42}, {'connected_gene': 'GC07P002305', 'score': 0.77}, {'connected_gene': 'GC07M002345', 'score': 0.26}]
chr7	GH07I002792	2792171	2793600	1.1	[{'connected_gene': 'GNA12', 'score': 20.11}, {'connected_gene': 'LFNG', 'score': 9.04}, {'connected_gene': 'SNX8', 'score': 2.44}, {'connected_gene': 'PIR32151', 'score': 0.31}, {'connected_gene': 'GC07M002729', 'score': 0.21}]
chr7	GH07I002795	2795172	2797793	1.06	[{'connected_gene': 'GNA12', 'score': 22.03}, {'connected_gene': 'LFNG', 'score': 4.28}, {'connected_gene': 'SNX8', 'score': 1.21}, {'connected_gene': 'PIR32151', 'score': 0.34}, {'connected_gene': 'GC07M002729', 'score': 0.2}]
chr7	GH07I002772	2772407	2774299	1.46	[{'connected_gene': 'GNA12', 'score': 23.48}, {'connected_gene': 'LFNG', 'score': 10.74}, {'connected_gene': 'AMZ1', 'score': 7.16}, {'connected_gene': 'SNX8', 'score': 1.46}, {'connected_gene': 'GC07M002729', 'score': 0.26}, {'connected_gene': 'PIR32151', 'score': 0.25}]
chr7	GH07I002756	2756258	2764928	2.28	[{'connected_gene': 'GNA12', 'score': 579.59}, {'connected_gene': 'BRAT1', 'score': 40.18}, {'connected_gene': 'CHST12', 'score': 29.98}, {'connected_gene': 'EIF3B', 'score': 20.37}, {'connected_gene': 'AMZ1', 'score': 18.85}, {'connected_gene': 'LFNG', 'score': 11.75}, {'connected_gene': 'TTYH3', 'score': 11.17}, {'connected_gene': 'SNX8', 'score': 1.76}, {'connected_gene': 'GC07M002729', 'score': 0.29}, {'connected_gene': 'PIR32151', 'score': 0.22}]
chr7	GH07I002727	2727716	2736079	1.61	[{'connected_gene': 'GNA12', 'score': 29.62}, {'connected_gene': 'BRAT1', 'score': 23.12}, {'connected_gene': 'CHST12', 'score': 10.85}, {'connected_gene': 'AMZ1', 'score': 7.25}, {'connected_gene': 'LFNG', 'score': 3.79}, {'connected_gene': 'SNX8', 'score': 1.49}, {'connected_gene': 'GC07M002729', 'score': 0.77}, {'connected_gene': 'PIR32151', 'score': 0.17}]
chr7	GH07I002693	2693923	2694401	1.06	[{'connected_gene': 'AMZ1', 'score': 50.46}, {'connected_gene': 'LFNG', 'score': 6.43}, {'connected_gene': 'GNA12', 'score': 2.05}, {'connected_gene': 'SNX8', 'score': 1.4}, {'connected_gene': 'GC07P002723', 'score': 0.31}]
chr7	GH07I002287	2287868	2290305	0.56	[{'connected_gene': 'IMMP1LP3', 'score': 550.77}, {'connected_gene': 'SNX8', 'score': 8.24}, {'connected_gene': 'GC07P002305', 'score': 0.37}]
chr7	GH07I002113	2113627	2114734	1.05	[{'connected_gene': 'LOC105375127', 'score': 550.77}, {'connected_gene': 'LFNG', 'score': 6.17}, {'connected_gene': 'MRM2', 'score': 5.4}, {'connected_gene': 'SNX8', 'score': 2.39}, {'connected_gene': 'GC07P002128', 'score': 0.39}, {'connected_gene': 'MAD1L1', 'score': 0.13}]
chr7	GH07I002258	2258735	2259731	0.89	[{'connected_gene': 'MIR6836', 'score': 550.77}, {'connected_gene': 'SNX8', 'score': 1.77}, {'connected_gene': 'LFNG', 'score': 1.51}, {'connected_gene': 'GC07P002270', 'score': 0.39}]
chr7	GH07I002260	2260926	2261115	0.69	[{'connected_gene': 'MIR6836', 'score': 0.77}, {'connected_gene': 'GC07P002270', 'score': 0.44}, {'connected_gene': 'SNX8', 'score': 0.16}]
chr7	GH07I001921	1921919	1922869	1.37	[{'connected_gene': 'LOC100127955', 'score': 11.32}, {'connected_gene': 'MRM2', 'score': 9.17}, {'connected_gene': 'MAFK', 'score': 3.4}, {'connected_gene': 'SNX8', 'score': 1.52}, {'connected_gene': 'GC07M001848', 'score': 0.34}, {'connected_gene': 'GC07P001949', 'score': 0.31}, {'connected_gene': 'MAD1L1', 'score': 0.06}]
chr7	GH07I002357	2357226	2357515	0.72	[{'connected_gene': 'GC07M002353', 'score': 550.77}, {'connected_gene': 'EIF3B', 'score': 0.77}, {'connected_gene': 'SNX8', 'score': 0.77}]
chr7	GH07I002347	2347801	2348755	0.88	[{'connected_gene': 'GC07M002345', 'score': 550.77}, {'connected_gene': 'EIF3B', 'score': 10.24}, {'connected_gene': 'SNX8', 'score': 0.44}]
chr7	GH07I002304	2304459	2305398	1.1	[{'connected_gene': 'GC07P002305', 'score': 550.77}, {'connected_gene': 'MRM2', 'score': 19.43}, {'connected_gene': 'NUDT1', 'score': 12.45}, {'connected_gene': 'MAD1L1', 'score': 12.44}, {'connected_gene': 'IMMP1LP3', 'score': 0.37}, {'connected_gene': 'SNX8', 'score': 0.25}]
chr7	GH07I002247	2247496	2250457	0.94	[{'connected_gene': 'PIR41829', 'score': 550.77}, {'connected_gene': 'MRM2', 'score': 8.9}, {'connected_gene': 'SNX8', 'score': 7.6}, {'connected_gene': 'PIR43450', 'score': 0.44}, {'connected_gene': 'NUDT1', 'score': 0.44}]
chr7	GH07I002252	2251646	2251795	0.2	[{'connected_gene': 'PIR41829', 'score': 550.77}, {'connected_gene': 'MRM2', 'score': 7.86}, {'connected_gene': 'MIR6836', 'score': 0.44}, {'connected_gene': 'SNX8', 'score': 0.15}]
chr7	GH07I002269	2269166	2270895	0.77	[{'connected_gene': 'GC07P002270', 'score': 550.77}, {'connected_gene': 'SNX8', 'score': 8.68}, {'connected_gene': 'MIR6836', 'score': 0.39}]
chr7	GH07I002251	2251446	2251595	0.2	[{'connected_gene': 'PIR41829', 'score': 550.77}, {'connected_gene': 'SNX8', 'score': 9.12}, {'connected_gene': 'MIR6836', 'score': 0.44}]
chr7	GH07I002307	2306086	2306235	0.31	[{'connected_gene': 'GC07P002305', 'score': 550.77}, {'connected_gene': 'GC07M002345', 'score': 0.26}, {'connected_gene': 'SNX8', 'score': 0.25}]