PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000249700	[[52043757, 52043909], [52058569, 52058764], [52060458, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52074917, 52075025], [52090393, 52090537], [52098573, 52098718], [52100616, 52108565]]	[[52058638, 52058764], [52060458, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52074917, 52075025], [52090393, 52090537], [52098573, 52098718], [52100616, 52100651]]
ENST00000539962	[[52043793, 52043909], [52058569, 52058764], [52059267, 52059349], [52060458, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52074917, 52075025], [52090393, 52090537], [52098573, 52098718], [52100616, 52102328]]	[[52060464, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52074917, 52075025], [52090393, 52090537], [52098573, 52098718], [52100616, 52100651]]
ENST00000560576	[[52043811, 52043909], [52058569, 52059267], [52075625, 52077177]]	None
ENST00000435126	[[52043863, 52043909], [52058569, 52058764], [52060458, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52090393, 52090537], [52098573, 52098718], [52100616, 52101078]]	[[52058638, 52058764], [52060458, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52090393, 52090537], [52098573, 52098718], [52100616, 52100651]]
ENST00000561300	[[52073245, 52073371], [52074917, 52075333]]	None
ENST00000561407	[[52075018, 52075025], [52090393, 52090537], [52098573, 52098718], [52100616, 52100741], [52102375, 52102489]]	[[52075018, 52075025], [52090393, 52090537], [52098573, 52098718], [52100616, 52100651]]
NM_001142885	[[52043757, 52043909], [52058569, 52058764], [52060458, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52090393, 52090537], [52098573, 52098718], [52100616, 52108560]]	[[52058638, 52058764], [52060458, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52090393, 52090537], [52098573, 52098718], [52100616, 52100651]]
NM_014548	[[52043757, 52043909], [52058569, 52058764], [52060458, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52074917, 52075025], [52090393, 52090537], [52098573, 52098718], [52100616, 52108560]]	[[52058638, 52058764], [52060458, 52060615], [52065908, 52066031], [52069128, 52069215], [52073240, 52073371], [52074917, 52075025], [52090393, 52090537], [52098573, 52098718], [52100616, 52100651]]

Promoter

Chrom	Start	End	Description
chr15	52043784	52043809	CAGE_peak_1_at_TMOD2_5end
chr15	52043813	52043859	CAGE_peak_2_at_TMOD2_5end
chr15	52102855	52102868	CAGE_peak_5_at_TMOD2_5end
chr15	52102871	52102880	CAGE_peak_11_at_TMOD2_5end
chr15	52102959	52102974	CAGE_peak_3_at_TMOD2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I051706	51706115	51706593	0.63	[{'connected_gene': 'SCG3', 'score': 12.05}, {'connected_gene': 'LYSMD2', 'score': 11.37}, {'connected_gene': 'TMOD2', 'score': 11.37}, {'connected_gene': 'MAPK6', 'score': 4.96}, {'connected_gene': 'ENSG00000259296', 'score': 0.44}, {'connected_gene': 'ENSG00000259241', 'score': 0.39}]
chr15	GH15I051641	51641223	51642807	0.46	[{'connected_gene': 'SCG3', 'score': 24.12}, {'connected_gene': 'DMXL2', 'score': 20.33}, {'connected_gene': 'ENSG00000260618', 'score': 15.27}, {'connected_gene': 'TRPM7', 'score': 13.92}, {'connected_gene': 'AP4E1', 'score': 12.42}, {'connected_gene': 'LYSMD2', 'score': 11.59}, {'connected_gene': 'TMOD2', 'score': 11.59}, {'connected_gene': 'ENSG00000259712', 'score': 11.38}, {'connected_gene': 'LOC105370816', 'score': 0.39}]
chr15	GH15I051758	51758284	51760289	1.06	[{'connected_gene': 'LYSMD2', 'score': 22.89}, {'connected_gene': 'ENSG00000259712', 'score': 20.68}, {'connected_gene': 'ENSG00000260618', 'score': 16.1}, {'connected_gene': 'FAM214A', 'score': 11.9}, {'connected_gene': 'ENSG00000259935', 'score': 11.25}, {'connected_gene': 'SCG3', 'score': 11.01}, {'connected_gene': 'AP4E1', 'score': 10.46}, {'connected_gene': 'DMXL2', 'score': 4.18}, {'connected_gene': 'ENSG00000259377', 'score': 0.44}, {'connected_gene': 'TMOD2', 'score': 0.44}, {'connected_gene': 'GC15P051815', 'score': 0.22}]
chr15	GH15I051841	51841201	51848074	1.59	[{'connected_gene': 'LYSMD2', 'score': 38.07}, {'connected_gene': 'TMOD2', 'score': 16.82}, {'connected_gene': 'TMOD3', 'score': 12.98}, {'connected_gene': 'DMXL2', 'score': 9.96}, {'connected_gene': 'MAPK6', 'score': 9.27}, {'connected_gene': 'ENSG00000259178', 'score': 6.45}, {'connected_gene': 'MYO5C', 'score': 5.75}, {'connected_gene': 'ENSG00000277677', 'score': 0.39}, {'connected_gene': 'ENSG00000274954', 'score': 0.39}]
chr15	GH15I051750	51750186	51750562	0.61	[{'connected_gene': 'LYSMD2', 'score': 601.36}, {'connected_gene': 'TMOD2', 'score': 550.77}, {'connected_gene': 'TMOD3', 'score': 6.54}, {'connected_gene': 'ENSG00000259296', 'score': 0.28}]
chr15	GH15I051771	51771641	51774182	0.2	[{'connected_gene': 'LYSMD2', 'score': 48.21}, {'connected_gene': 'TMOD2', 'score': 19.31}, {'connected_gene': 'SCG3', 'score': 11.36}, {'connected_gene': 'TMOD3', 'score': 10.29}, {'connected_gene': 'DMXL2', 'score': 6.61}, {'connected_gene': 'ENSG00000259377', 'score': 0.34}, {'connected_gene': 'GC15P051815', 'score': 0.26}]
chr15	GH15I051646	51646824	51647713	1.37	[{'connected_gene': 'LYSMD2', 'score': 11.34}, {'connected_gene': 'TMOD2', 'score': 11.34}, {'connected_gene': 'SCG3', 'score': 10.91}, {'connected_gene': 'TMOD3', 'score': 5.89}, {'connected_gene': 'LOC105370816', 'score': 0.44}, {'connected_gene': 'DMXL2', 'score': 0.34}]
chr15	GH15I051725	51725783	51728473	1.1	[{'connected_gene': 'LYSMD2', 'score': 12.56}, {'connected_gene': 'TMOD2', 'score': 12.56}, {'connected_gene': 'SCG3', 'score': 11.44}, {'connected_gene': 'TMOD3', 'score': 8.15}, {'connected_gene': 'ENSG00000259296', 'score': 0.39}]
chr15	GH15I051650	51650024	51650193	0.73	[{'connected_gene': 'LYSMD2', 'score': 11.34}, {'connected_gene': 'TMOD2', 'score': 11.34}, {'connected_gene': 'SCG3', 'score': 10.91}, {'connected_gene': 'LOC105370816', 'score': 0.44}, {'connected_gene': 'DMXL2', 'score': 0.31}]
chr15	GH15I051643	51643424	51643573	0.59	[{'connected_gene': 'LYSMD2', 'score': 11.34}, {'connected_gene': 'TMOD2', 'score': 11.34}, {'connected_gene': 'SCG3', 'score': 10.9}, {'connected_gene': 'LOC105370816', 'score': 0.39}, {'connected_gene': 'DMXL2', 'score': 0.34}]
chr15	GH15I051776	51776284	51776433	0.94	[{'connected_gene': 'LYSMD2', 'score': 12.1}, {'connected_gene': 'TMOD2', 'score': 12.1}, {'connected_gene': 'SCG3', 'score': 11.35}, {'connected_gene': 'ENSG00000259377', 'score': 0.34}, {'connected_gene': 'GC15P051815', 'score': 0.28}]
chr15	GH15I051722	51722130	51722277	0.2	[{'connected_gene': 'LYSMD2', 'score': 11.81}, {'connected_gene': 'TMOD2', 'score': 11.81}, {'connected_gene': 'SCG3', 'score': 11.25}, {'connected_gene': 'ENSG00000259296', 'score': 0.44}]
chr15	GH15I051672	51672268	51672493	0.89	[{'connected_gene': 'LYSMD2', 'score': 10.97}, {'connected_gene': 'TMOD2', 'score': 10.97}, {'connected_gene': 'DMXL2', 'score': 7.54}, {'connected_gene': 'MAPK6', 'score': 4.68}, {'connected_gene': 'SCG3', 'score': 0.44}, {'connected_gene': 'LOC105370816', 'score': 0.37}]
chr15	GH15I051600	51600264	51600433	0.98	[{'connected_gene': 'LYSMD2', 'score': 10.11}, {'connected_gene': 'TMOD2', 'score': 10.11}, {'connected_gene': 'DMXL2', 'score': 0.34}, {'connected_gene': 'GC15M057426', 'score': 0.28}]
chr15	GH15I051787	51787224	51787373	0.72	[{'connected_gene': 'LYSMD2', 'score': 11.71}, {'connected_gene': 'TMOD2', 'score': 11.71}, {'connected_gene': 'GC15P051815', 'score': 0.31}, {'connected_gene': 'ENSG00000259377', 'score': 0.29}]
chr15	GH15I051777	51777064	51777253	0.94	[{'connected_gene': 'LYSMD2', 'score': 12.17}, {'connected_gene': 'TMOD2', 'score': 12.17}, {'connected_gene': 'ENSG00000259377', 'score': 0.34}, {'connected_gene': 'GC15P051815', 'score': 0.28}]
chr15	GH15I051751	51751011	51752401	2.05	[{'connected_gene': 'LYSMD2', 'score': 584.23}, {'connected_gene': 'ENSG00000259377', 'score': 550.77}, {'connected_gene': 'TMOD2', 'score': 550.77}]
chr15	GH15I051739	51739204	51739313	0.63	[{'connected_gene': 'LYSMD2', 'score': 0.39}, {'connected_gene': 'TMOD2', 'score': 0.39}, {'connected_gene': 'ENSG00000259296', 'score': 0.34}]
chr15	GH15I051796	51796207	51797508	0.84	[{'connected_gene': 'LYSMD2', 'score': 35.08}, {'connected_gene': 'GC15P051815', 'score': 0.37}, {'connected_gene': 'ENSG00000259377', 'score': 0.26}, {'connected_gene': 'TMOD2', 'score': 0.25}]
chr15	GH15I051756	51756001	51757000	0.66	[{'connected_gene': 'LYSMD2', 'score': 36.88}, {'connected_gene': 'TMOD3', 'score': 8.0}, {'connected_gene': 'ENSG00000259377', 'score': 0.77}, {'connected_gene': 'TMOD2', 'score': 0.77}, {'connected_gene': 'GC15P051815', 'score': 0.22}]
chr15	GH15I051769	51769560	51771107	0.31	[{'connected_gene': 'LYSMD2', 'score': 36.47}, {'connected_gene': 'TMOD3', 'score': 18.1}, {'connected_gene': 'SCG3', 'score': 11.26}, {'connected_gene': 'ENSG00000259377', 'score': 0.37}, {'connected_gene': 'TMOD2', 'score': 0.37}, {'connected_gene': 'GC15P051815', 'score': 0.26}]
chr15	GH15I051877	51877510	51881242	1.25	[{'connected_gene': 'LYSMD2', 'score': 38.2}, {'connected_gene': 'TMOD3', 'score': 23.79}, {'connected_gene': 'GNB5', 'score': 9.78}, {'connected_gene': 'TMOD2', 'score': 9.74}, {'connected_gene': 'GC15P051886', 'score': 0.44}, {'connected_gene': 'LOC100422490', 'score': 0.37}, {'connected_gene': 'GC15M057424', 'score': 0.34}]
chr15	GH15I051718	51718034	51721528	0.89	[{'connected_gene': 'LYSMD2', 'score': 45.16}, {'connected_gene': 'SCG3', 'score': 12.11}, {'connected_gene': 'TMOD2', 'score': 11.79}, {'connected_gene': 'TMOD3', 'score': 7.33}, {'connected_gene': 'DMXL2', 'score': 5.38}, {'connected_gene': 'ENSG00000259296', 'score': 0.77}]
chr15	GH15I051764	51764100	51767422	0.31	[{'connected_gene': 'LYSMD2', 'score': 36.5}, {'connected_gene': 'SCG3', 'score': 11.0}, {'connected_gene': 'TMOD3', 'score': 8.02}, {'connected_gene': 'ENSG00000259377', 'score': 0.39}, {'connected_gene': 'TMOD2', 'score': 0.39}, {'connected_gene': 'GC15P051815', 'score': 0.25}]
chr15	GH15I051767	51767801	51768000	0.2	[{'connected_gene': 'LYSMD2', 'score': 24.74}, {'connected_gene': 'SCG3', 'score': 11.26}, {'connected_gene': 'TMOD3', 'score': 10.28}, {'connected_gene': 'ENSG00000259377', 'score': 0.37}, {'connected_gene': 'TMOD2', 'score': 0.37}, {'connected_gene': 'GC15P051815', 'score': 0.25}]
chr15	GH15I051728	51728916	51738836	2.72	[{'connected_gene': 'LYSMD2', 'score': 587.47}, {'connected_gene': 'DMXL2', 'score': 20.12}, {'connected_gene': 'SCG3', 'score': 11.21}, {'connected_gene': 'TMOD3', 'score': 8.19}, {'connected_gene': 'MAPK6', 'score': 7.03}, {'connected_gene': 'TMOD2', 'score': 6.45}, {'connected_gene': 'ENSG00000259296', 'score': 0.37}]
chr15	GH15I051620	51620238	51624665	2.57	[{'connected_gene': 'DMXL2', 'score': 601.11}, {'connected_gene': 'SCG3', 'score': 22.54}, {'connected_gene': 'LYSMD2', 'score': 12.4}, {'connected_gene': 'TRPM7', 'score': 10.88}, {'connected_gene': 'ENSG00000260618', 'score': 10.87}, {'connected_gene': 'MAPK6', 'score': 10.19}, {'connected_gene': 'AP4E1', 'score': 10.15}, {'connected_gene': 'TMOD2', 'score': 10.09}, {'connected_gene': 'TMOD3', 'score': 4.85}, {'connected_gene': 'ENSG00000259678', 'score': 4.58}, {'connected_gene': 'LOC105370816', 'score': 0.29}, {'connected_gene': 'GC15M057426', 'score': 0.22}]
chr15	GH15I051707	51707024	51709381	0.94	[{'connected_gene': 'DMXL2', 'score': 20.3}, {'connected_gene': 'SCG3', 'score': 18.94}, {'connected_gene': 'LYSMD2', 'score': 10.65}, {'connected_gene': 'TMOD2', 'score': 10.65}, {'connected_gene': 'MAPK6', 'score': 6.55}, {'connected_gene': 'TMOD3', 'score': 4.89}, {'connected_gene': 'ENSG00000259296', 'score': 0.44}, {'connected_gene': 'ENSG00000259241', 'score': 0.39}]