PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000398606	[[67351065, 67351315], [67351604, 67351640], [67351934, 67352041], [67352155, 67352243], [67352608, 67352712], [67353574, 67353682], [67353859, 67354131]]	[[67351314, 67351315], [67351604, 67351640], [67351934, 67352041], [67352155, 67352243], [67352608, 67352712], [67353574, 67353682], [67353859, 67354048]]
ENST00000398603	[[67351212, 67351315], [67351604, 67351640], [67351934, 67352041], [67352155, 67352243], [67352608, 67352712], [67353859, 67354121]]	[[67351314, 67351315], [67351604, 67351640], [67351934, 67352041], [67352155, 67352243], [67352608, 67352712], [67353859, 67354048]]
ENST00000494593	[[67351292, 67351315], [67351604, 67352712], [67353574, 67354124]]	None
ENST00000464930	[[67351594, 67351640], [67351934, 67352041], [67352155, 67352243], [67352608, 67352712], [67353574, 67353682], [67353859, 67354125]]	None
ENST00000476137	[[67351595, 67351640], [67351934, 67352041], [67352155, 67352243], [67352608, 67352712], [67353859, 67354120]]	None
ENST00000489040	[[67351604, 67351640], [67351934, 67352041], [67352155, 67352535]]	None
ENST00000498765	[[67351925, 67352041], [67352155, 67352243], [67352508, 67352712], [67353574, 67353682], [67353859, 67354075]]	None
ENST00000467591	[[67352265, 67352712], [67353574, 67353682], [67353859, 67354040]]	None
ENST00000495996	[[67353574, 67353744], [67353859, 67353910]]	None
NM_000852	[[67351065, 67351315], [67351604, 67351640], [67351934, 67352041], [67352155, 67352243], [67352608, 67352712], [67353574, 67353682], [67353859, 67354124]]	[[67351314, 67351315], [67351604, 67351640], [67351934, 67352041], [67352155, 67352243], [67352608, 67352712], [67353574, 67353682], [67353859, 67354048]]

Promoter

Chrom	Start	End	Description
chr11	67351019	67351025	CAGE_peak_10_at_GSTP1_5end
chr11	67351142	67351153	CAGE_peak_4_at_GSTP1_5end
chr11	67351250	67351261	CAGE_peak_2_at_GSTP1_5end
chr11	67351274	67351293	CAGE_peak_1_at_GSTP1_5end
chr11	67351313	67351316	CAGE_peak_9_at_GSTP1_5end
chr11	67351585	67351617	CAGE_peak_6_at_GSTP1_5end
chr11	67351960	67351976	CAGE_peak_12_at_GSTP1_5end
chr11	67352151	67352174	CAGE_peak_8_at_GSTP1_5end
chr11	67352177	67352212	CAGE_peak_5_at_GSTP1_5end
chr11	67352543	67352552	CAGE_peak_19_at_GSTP1_5end
chr11	67352589	67352592	CAGE_peak_20_at_GSTP1_5end
chr11	67352594	67352692	CAGE_peak_3_at_GSTP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I067560	67560925	67564843	1.34	[{'connected_gene': 'PTPRCAP', 'score': 24.9}, {'connected_gene': 'AIP', 'score': 17.07}, {'connected_gene': 'KMT5B', 'score': 16.02}, {'connected_gene': 'NDUFV1', 'score': 15.88}, {'connected_gene': 'ENSG00000258297', 'score': 14.98}, {'connected_gene': 'PPP6R3', 'score': 14.64}, {'connected_gene': 'RBM14', 'score': 13.24}, {'connected_gene': 'CABP2', 'score': 11.76}, {'connected_gene': 'C11orf72', 'score': 11.73}, {'connected_gene': 'ENSG00000255119', 'score': 11.73}, {'connected_gene': 'DOC2GP', 'score': 11.7}, {'connected_gene': 'NUDT8', 'score': 11.32}, {'connected_gene': 'TBX10', 'score': 11.3}, {'connected_gene': 'ACY3', 'score': 11.11}, {'connected_gene': 'ENSG00000227834', 'score': 11.1}, {'connected_gene': 'RBM4', 'score': 9.95}, {'connected_gene': 'ALDH3B2', 'score': 6.11}, {'connected_gene': 'CDK2AP2', 'score': 4.69}, {'connected_gene': 'GC11M067541', 'score': 0.34}, {'connected_gene': 'GSTP1', 'score': 0.34}]
chr11	GH11I067544	67544193	67545630	1.13	[{'connected_gene': 'PTPRCAP', 'score': 28.78}, {'connected_gene': 'ALDH3B2', 'score': 6.1}, {'connected_gene': 'FAM86C2P', 'score': 4.65}, {'connected_gene': 'GC11M067541', 'score': 0.77}, {'connected_gene': 'GSTP1', 'score': 0.28}]
chr11	GH11I067557	67557530	67560270	1.4	[{'connected_gene': 'PTPRCAP', 'score': 25.85}, {'connected_gene': 'ALDH3B2', 'score': 6.11}, {'connected_gene': 'NDUFV1', 'score': 4.4}, {'connected_gene': 'NUDT8', 'score': 4.17}, {'connected_gene': 'CDK2AP2', 'score': 2.51}, {'connected_gene': 'GC11M067541', 'score': 0.37}, {'connected_gene': 'GSTP1', 'score': 0.34}]
chr11	GH11I067572	67572290	67573729	1.35	[{'connected_gene': 'NDUFV1', 'score': 16.2}, {'connected_gene': 'RBM14', 'score': 13.36}, {'connected_gene': 'RBM4B', 'score': 12.61}, {'connected_gene': 'C11orf72', 'score': 12.05}, {'connected_gene': 'ENSG00000255119', 'score': 12.05}, {'connected_gene': 'DOC2GP', 'score': 12.01}, {'connected_gene': 'NUDT8', 'score': 11.98}, {'connected_gene': 'TBX10', 'score': 11.97}, {'connected_gene': 'KDM2A', 'score': 11.67}, {'connected_gene': 'PPP6R3', 'score': 11.64}, {'connected_gene': 'AIP', 'score': 11.55}, {'connected_gene': 'ACY3', 'score': 11.13}, {'connected_gene': 'ENSG00000227834', 'score': 11.12}, {'connected_gene': 'RBM4', 'score': 10.24}, {'connected_gene': 'KMT5B', 'score': 10.06}, {'connected_gene': 'ALDH3B2', 'score': 6.12}, {'connected_gene': 'GSTP1', 'score': 0.39}, {'connected_gene': 'GC11M067541', 'score': 0.29}]
chr11	GH11I067579	67579219	67589454	2.46	[{'connected_gene': 'GSTP1', 'score': 550.77}, {'connected_gene': 'ENSG00000255119', 'score': 39.0}, {'connected_gene': 'NUDT8', 'score': 36.19}, {'connected_gene': 'PTPRCAP', 'score': 24.66}, {'connected_gene': 'NDUFV1', 'score': 18.26}, {'connected_gene': 'C11orf72', 'score': 12.6}, {'connected_gene': 'DOC2GP', 'score': 12.56}, {'connected_gene': 'RHOD', 'score': 11.38}, {'connected_gene': 'LRP5', 'score': 10.2}, {'connected_gene': 'ALDH3B2', 'score': 6.44}, {'connected_gene': 'CDK2AP2', 'score': 6.2}, {'connected_gene': 'ACY3', 'score': 4.82}, {'connected_gene': 'FAM86C2P', 'score': 4.06}, {'connected_gene': 'GC11P067588', 'score': 0.77}, {'connected_gene': 'GC11M067584', 'score': 0.26}]