PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370968	[[52761436, 52761726], [52762622, 52762754], [52764731, 52764873], [52767143, 52767276], [52768473, 52768525], [52774438, 52774464]]	[[52761603, 52761726], [52762622, 52762754], [52764731, 52764873], [52767143, 52767265]]
ENST00000211122	[[52761436, 52761726], [52762622, 52762754], [52764731, 52764873], [52767143, 52767276], [52768473, 52768525], [52770545, 52770653], [52774438, 52774483]]	[[52761603, 52761726], [52762622, 52762754], [52764731, 52764873], [52767143, 52767276], [52768473, 52768525], [52770545, 52770632]]
ENST00000431899	[[52762639, 52762707], [52764738, 52764873], [52767143, 52767276], [52770545, 52770620]]	[[52762639, 52762707], [52764738, 52764873], [52767143, 52767265]]
NM_000847	[[52761436, 52761726], [52762622, 52762754], [52764731, 52764873], [52767143, 52767276], [52768473, 52768525], [52770545, 52770653], [52774438, 52774496]]	[[52761603, 52761726], [52762622, 52762754], [52764731, 52764873], [52767143, 52767276], [52768473, 52768525], [52770545, 52770632]]

Promoter

Chrom	Start	End	Description
chr6	52774478	52774499	CAGE_peak_1_at_GSTA3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I052918	52918027	52921410	0.88	[{'connected_gene': 'GSTA4', 'score': 8.47}, {'connected_gene': 'GSTA3', 'score': 7.15}, {'connected_gene': 'LRRC1', 'score': 6.56}, {'connected_gene': 'GC06P052940', 'score': 0.34}]
chr6	GH06I052992	52992994	52997088	2.32	[{'connected_gene': 'GSTA4', 'score': 550.77}, {'connected_gene': 'RN7SK', 'score': 550.77}, {'connected_gene': 'GC06P052997', 'score': 550.77}, {'connected_gene': 'ENSG00000202198', 'score': 550.77}, {'connected_gene': 'EFHC1', 'score': 30.23}, {'connected_gene': 'MCM3', 'score': 30.11}, {'connected_gene': 'ICK', 'score': 16.24}, {'connected_gene': 'GSTA3', 'score': 10.15}, {'connected_gene': 'GC06P052982', 'score': 0.39}]
chr6	GH06I052928	52928903	52930370	1.09	[{'connected_gene': 'GSTA4', 'score': 6.96}, {'connected_gene': 'LINC01564', 'score': 4.84}, {'connected_gene': 'GC06P052940', 'score': 0.39}, {'connected_gene': 'GSTA3', 'score': 0.37}]
chr6	GH06I052728	52728403	52728552	0.46	[{'connected_gene': 'GSTA3', 'score': 4.92}, {'connected_gene': 'GSTA7P', 'score': 0.37}, {'connected_gene': 'PIR31960', 'score': 0.37}]
chr6	GH06I052903	52903970	52905063	0.52	[{'connected_gene': 'GSTA3', 'score': 7.05}, {'connected_gene': 'GSTA10P', 'score': 0.39}, {'connected_gene': 'LOC105375091', 'score': 0.34}]
chr6	GH06I052892	52892668	52896081	0.6	[{'connected_gene': 'GSTA3', 'score': 11.12}, {'connected_gene': 'GSTA4', 'score': 6.68}, {'connected_gene': 'GSTA10P', 'score': 0.77}, {'connected_gene': 'LOC105375091', 'score': 0.39}]
chr6	GH06I052908	52908081	52911211	0.99	[{'connected_gene': 'GSTA3', 'score': 550.77}, {'connected_gene': 'GSTA4', 'score': 8.18}, {'connected_gene': 'GSTA10P', 'score': 0.37}]
chr6	GH06I052942	52942203	52942799	0.2	[{'connected_gene': 'GSTA3', 'score': 12.22}, {'connected_gene': 'GSTA4', 'score': 6.88}, {'connected_gene': 'GC06P052940', 'score': 0.77}, {'connected_gene': 'GC06P052954', 'score': 0.39}, {'connected_gene': 'GSTA9P', 'score': 0.37}]
chr6	GH06I053040	53040580	53044964	1.12	[{'connected_gene': 'GSTA3', 'score': 9.99}, {'connected_gene': 'ICK', 'score': 5.45}, {'connected_gene': 'LRRC1', 'score': 4.06}, {'connected_gene': 'FBXO9', 'score': 0.44}, {'connected_gene': 'GC06P053034', 'score': 0.44}]
chr6	GH06I052856	52856013	52856895	0.71	[{'connected_gene': 'GSTA1', 'score': 13.57}, {'connected_gene': 'GSTA3', 'score': 10.63}, {'connected_gene': 'ICK', 'score': 10.56}, {'connected_gene': 'GSTA7P', 'score': 6.55}, {'connected_gene': 'GC06P052867', 'score': 0.44}, {'connected_gene': 'GSTA11P', 'score': 0.39}, {'connected_gene': 'GSTA5', 'score': 0.39}]
chr6	GH06I052723	52723441	52727000	1.43	[{'connected_gene': 'TMEM14A', 'score': 17.92}, {'connected_gene': 'LOC730101', 'score': 8.39}, {'connected_gene': 'GSTA3', 'score': 4.78}, {'connected_gene': 'GSTA7P', 'score': 0.37}, {'connected_gene': 'PIR31960', 'score': 0.37}]
chr6	GH06I053064	53064283	53069499	2.48	[{'connected_gene': 'FBXO9', 'score': 550.39}, {'connected_gene': 'MCM3', 'score': 21.65}, {'connected_gene': 'EFHC1', 'score': 12.99}, {'connected_gene': 'GSTA3', 'score': 9.95}, {'connected_gene': 'ICK', 'score': 5.0}, {'connected_gene': 'GC06P053085', 'score': 0.37}]
chr6	GH06I053054	53054035	53063285	2.27	[{'connected_gene': 'ICK', 'score': 550.77}, {'connected_gene': 'MCM3', 'score': 15.89}, {'connected_gene': 'TRAM2', 'score': 10.66}, {'connected_gene': 'GSTA3', 'score': 9.76}, {'connected_gene': 'FBXO9', 'score': 0.44}]
chr6	GH06I053022	53022419	53027405	0.38	[{'connected_gene': 'ICK', 'score': 16.54}, {'connected_gene': 'FBXO9', 'score': 11.87}, {'connected_gene': 'GSTA3', 'score': 10.18}, {'connected_gene': 'GC06P053016', 'score': 0.44}, {'connected_gene': 'GC06P053034', 'score': 0.44}]
chr6	GH06I052975	52975777	52977822	0.49	[{'connected_gene': 'GSTA9P', 'score': 12.27}, {'connected_gene': 'ICK', 'score': 10.79}, {'connected_gene': 'GSTA3', 'score': 10.73}, {'connected_gene': 'GC06M052979', 'score': 0.77}]
chr6	GH06I052814	52814947	52815926	1.05	[{'connected_gene': 'PIR38149', 'score': 550.77}, {'connected_gene': 'GSTA6P', 'score': 550.77}, {'connected_gene': 'GSTA1', 'score': 15.82}, {'connected_gene': 'GSTA3', 'score': 11.0}, {'connected_gene': 'ICK', 'score': 10.52}]
chr6	GH06I052877	52877303	52877492	0.6	[{'connected_gene': 'GC06P052876', 'score': 550.77}, {'connected_gene': 'GSTA3', 'score': 11.09}, {'connected_gene': 'KLHL31', 'score': 6.96}, {'connected_gene': 'LOC105375091', 'score': 0.77}, {'connected_gene': 'GSTA10P', 'score': 0.39}]
chr6	GH06I052876	52876503	52876652	0.6	[{'connected_gene': 'GC06P052876', 'score': 550.77}, {'connected_gene': 'GSTA3', 'score': 11.95}, {'connected_gene': 'LOC105375091', 'score': 0.44}, {'connected_gene': 'GSTA10P', 'score': 0.39}]
chr6	GH06I052926	52926363	52926512	0.31	[{'connected_gene': 'GC06P052940', 'score': 0.39}, {'connected_gene': 'GSTA3', 'score': 0.37}]
chr6	GH06I052927	52926523	52926567	0.31	[{'connected_gene': 'GC06P052940', 'score': 0.39}, {'connected_gene': 'GSTA3', 'score': 0.37}]
chr6	GH06I052984	52984201	52984600	0.77	[{'connected_gene': 'GC06P052982', 'score': 550.77}, {'connected_gene': 'GSTA9P', 'score': 10.69}, {'connected_gene': 'GSTA3', 'score': 10.47}, {'connected_gene': 'GSTA4', 'score': 0.39}]