PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264235	[[119540169, 119545702], [119562101, 119562200], [119582265, 119582452], [119595259, 119595355], [119624601, 119624699], [119631550, 119631657], [119634890, 119635021], [119642219, 119642330], [119666114, 119666198], [119720892, 119721086], [119812193, 119813264]]	[[119545634, 119545702], [119562101, 119562200], [119582265, 119582452], [119595259, 119595355], [119624601, 119624699], [119631550, 119631657], [119634890, 119635021], [119642219, 119642330], [119666114, 119666198], [119720892, 119721086], [119812193, 119812281]]
ENST00000316626	[[119545532, 119545702], [119562101, 119562200], [119582265, 119582452], [119585436, 119585475], [119595259, 119595355], [119624601, 119624699], [119631550, 119631657], [119634890, 119635021], [119642219, 119642330], [119666114, 119666198], [119720892, 119721086], [119812193, 119812513]]	[[119545634, 119545702], [119562101, 119562200], [119582265, 119582452], [119585436, 119585475], [119595259, 119595355], [119624601, 119624699], [119631550, 119631657], [119634890, 119635021], [119642219, 119642330], [119666114, 119666198], [119720892, 119721086], [119812193, 119812281]]
ENST00000474830	[[119545539, 119545702], [119562101, 119562456]]	None
ENST00000473886	[[119545547, 119545702], [119582265, 119582452], [119595259, 119595355]]	None
NM_002093	[[119540799, 119545702], [119562101, 119562200], [119582265, 119582452], [119585436, 119585475], [119595259, 119595355], [119624601, 119624699], [119631550, 119631657], [119634890, 119635021], [119642219, 119642330], [119666114, 119666198], [119720892, 119721086], [119812193, 119813264]]	[[119545634, 119545702], [119562101, 119562200], [119582265, 119582452], [119585436, 119585475], [119595259, 119595355], [119624601, 119624699], [119631550, 119631657], [119634890, 119635021], [119642219, 119642330], [119666114, 119666198], [119720892, 119721086], [119812193, 119812281]]
NM_001146156	[[119540799, 119545702], [119562101, 119562200], [119582265, 119582452], [119595259, 119595355], [119624601, 119624699], [119631550, 119631657], [119634890, 119635021], [119642219, 119642330], [119666114, 119666198], [119720892, 119721086], [119812193, 119813264]]	[[119545634, 119545702], [119562101, 119562200], [119582265, 119582452], [119595259, 119595355], [119624601, 119624699], [119631550, 119631657], [119634890, 119635021], [119642219, 119642330], [119666114, 119666198], [119720892, 119721086], [119812193, 119812281]]

Promoter

Chrom	Start	End	Description
chr3	119813131	119813152	CAGE_peak_3_at_GSK3B_5end
chr3	119813173	119813176	CAGE_peak_9_at_GSK3B_5end
chr3	119813238	119813245	CAGE_peak_7_at_GSK3B_5end
chr3	119813265	119813272	CAGE_peak_6_at_GSK3B_5end
chr3	119813284	119813301	CAGE_peak_1_at_GSK3B_5end
chr3	119813302	119813318	CAGE_peak_2_at_GSK3B_5end
chr3	119813323	119813330	CAGE_peak_4_at_GSK3B_5end
chr3	119813420	119813431	CAGE_peak_5_at_GSK3B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I119236	119236531	119241764	2.18	[{'connected_gene': 'B4GALT4', 'score': 561.95}, {'connected_gene': 'ARHGAP31', 'score': 10.54}, {'connected_gene': 'GSK3B', 'score': 4.15}, {'connected_gene': 'GC03M119181', 'score': 0.39}, {'connected_gene': 'B4GALT4-AS1', 'score': 0.39}]
chr3	GH03I119742	119742322	119742488	0.35	[{'connected_gene': 'ARHGAP31', 'score': 7.06}, {'connected_gene': 'ADPRH', 'score': 6.75}, {'connected_gene': 'COX17', 'score': 1.88}, {'connected_gene': 'CD80', 'score': 1.6}, {'connected_gene': 'GSK3B', 'score': 1.45}, {'connected_gene': 'ENSG00000239994', 'score': 0.44}, {'connected_gene': 'MAATS1', 'score': 0.28}]
chr3	GH03I119635	119635913	119640405	1.77	[{'connected_gene': 'RPL10P7', 'score': 566.9}, {'connected_gene': 'ADPRH', 'score': 16.22}, {'connected_gene': 'COX17', 'score': 12.37}, {'connected_gene': 'ARHGAP31', 'score': 11.64}, {'connected_gene': 'MAATS1', 'score': 9.8}, {'connected_gene': 'PLA1A', 'score': 4.5}, {'connected_gene': 'GSK3B', 'score': 2.07}, {'connected_gene': 'GC03M119637', 'score': 0.77}, {'connected_gene': 'POPDC2', 'score': 0.31}]
chr3	GH03I120003	120003801	120004803	0.94	[{'connected_gene': 'GSK3B', 'score': 4.72}, {'connected_gene': 'B4GALT4', 'score': 4.43}, {'connected_gene': 'LOC100129707', 'score': 0.34}, {'connected_gene': 'GC03P119973', 'score': 0.29}, {'connected_gene': 'GC03M119752', 'score': 0.18}]
chr3	GH03I120090	120090372	120097503	2.29	[{'connected_gene': 'GSK3B', 'score': 566.45}, {'connected_gene': 'ENSG00000242622', 'score': 550.77}, {'connected_gene': 'POGLUT1', 'score': 12.93}, {'connected_gene': 'TMEM39A', 'score': 12.32}, {'connected_gene': 'GC03M119752', 'score': 0.39}]
chr3	GH03I120135	120135336	120136179	0.76	[{'connected_gene': 'GSK3B', 'score': 7.77}, {'connected_gene': 'GPR156', 'score': 4.94}, {'connected_gene': 'PIR33291', 'score': 0.44}, {'connected_gene': 'RN7SL397P', 'score': 0.39}, {'connected_gene': 'ENSG00000242622', 'score': 0.26}]
chr3	GH03I120151	120151502	120154918	1.26	[{'connected_gene': 'GSK3B', 'score': 7.72}, {'connected_gene': 'GPR156', 'score': 4.42}, {'connected_gene': 'PIR46565', 'score': 0.77}, {'connected_gene': 'LOC105374065', 'score': 0.44}, {'connected_gene': 'GC03P120211', 'score': 0.22}]
chr3	GH03I120157	120157162	120164053	1.51	[{'connected_gene': 'GSK3B', 'score': 8.93}, {'connected_gene': 'GPR156', 'score': 4.78}, {'connected_gene': 'LOC100130701', 'score': 4.21}, {'connected_gene': 'PIR46565', 'score': 0.39}, {'connected_gene': 'LOC105374065', 'score': 0.39}, {'connected_gene': 'GC03P120211', 'score': 0.25}]
chr3	GH03I120175	120175836	120178797	1.11	[{'connected_gene': 'GSK3B', 'score': 8.27}, {'connected_gene': 'GPR156', 'score': 4.45}, {'connected_gene': 'LOC100130701', 'score': 4.23}, {'connected_gene': 'PIR46565', 'score': 0.31}, {'connected_gene': 'GC03P120211', 'score': 0.29}, {'connected_gene': 'LOC105374065', 'score': 0.29}]
chr3	GH03I120566	120566657	120568999	1.15	[{'connected_gene': 'GSK3B', 'score': 4.3}, {'connected_gene': 'ADPRH', 'score': 4.03}, {'connected_gene': 'NDUFB4', 'score': 0.31}, {'connected_gene': 'RPL34P9', 'score': 0.23}]
chr3	GH03I120101	120101620	120103444	0.66	[{'connected_gene': 'GSK3B', 'score': 7.72}, {'connected_gene': 'ENSG00000242622', 'score': 0.44}, {'connected_gene': 'RN7SL762P', 'score': 0.44}]
chr3	GH03I119809	119809272	119810800	0.95	[{'connected_gene': 'GSK3B', 'score': 8.47}, {'connected_gene': 'PHBP8', 'score': 0.37}, {'connected_gene': 'NR1I2', 'score': 0.31}, {'connected_gene': 'GC03P119973', 'score': 0.1}, {'connected_gene': 'GC03M119752', 'score': 0.06}]
chr3	GH03I119831	119831664	119833275	0.38	[{'connected_gene': 'GSK3B', 'score': 6.41}, {'connected_gene': 'PHBP8', 'score': 0.26}, {'connected_gene': 'GC03P119973', 'score': 0.11}, {'connected_gene': 'GC03M119752', 'score': 0.07}]
chr3	GH03I119841	119841087	119841976	0.57	[{'connected_gene': 'GSK3B', 'score': 17.07}, {'connected_gene': 'PHBP8', 'score': 0.25}, {'connected_gene': 'GC03P119973', 'score': 0.12}, {'connected_gene': 'GC03M119752', 'score': 0.07}]
chr3	GH03I119825	119825836	119826484	0.84	[{'connected_gene': 'GSK3B', 'score': 4.45}, {'connected_gene': 'PHBP8', 'score': 0.29}, {'connected_gene': 'GC03P119973', 'score': 0.11}, {'connected_gene': 'GC03M119752', 'score': 0.07}]
chr3	GH03I119993	119993801	119994000	0.49	[{'connected_gene': 'GSK3B', 'score': 10.97}, {'connected_gene': 'GC03P119973', 'score': 0.34}, {'connected_gene': 'LOC100129707', 'score': 0.29}, {'connected_gene': 'GC03M119752', 'score': 0.17}]
chr3	GH03I120089	120089201	120089600	0.38	[{'connected_gene': 'GSK3B', 'score': 5.05}, {'connected_gene': 'GC03M119752', 'score': 0.44}]
chr3	GH03I120088	120088801	120089000	0.31	[{'connected_gene': 'GSK3B', 'score': 0.44}, {'connected_gene': 'GC03M119752', 'score': 0.44}]
chr3	GH03I120202	120202584	120203989	0.89	[{'connected_gene': 'GPR156', 'score': 15.19}, {'connected_gene': 'GSK3B', 'score': 7.54}, {'connected_gene': 'GC03P120211', 'score': 0.44}, {'connected_gene': 'PIR46565', 'score': 0.23}]
chr3	GH03I119626	119626787	119631999	1.5	[{'connected_gene': 'ADPRH', 'score': 32.83}, {'connected_gene': 'MAATS1', 'score': 19.08}, {'connected_gene': 'RPL10P7', 'score': 16.7}, {'connected_gene': 'COX17', 'score': 13.97}, {'connected_gene': 'CD80', 'score': 12.06}, {'connected_gene': 'POPDC2', 'score': 11.76}, {'connected_gene': 'ARHGAP31', 'score': 11.07}, {'connected_gene': 'PLA1A', 'score': 5.9}, {'connected_gene': 'GPR156', 'score': 5.1}, {'connected_gene': 'GSK3B', 'score': 1.98}, {'connected_gene': 'GC03M119637', 'score': 0.44}, {'connected_gene': 'LOC105374062', 'score': 0.34}]
chr3	GH03I119627	119626334	119626547	0.44	[{'connected_gene': 'ADPRH', 'score': 19.09}, {'connected_gene': 'POPDC2', 'score': 11.76}, {'connected_gene': 'CD80', 'score': 10.96}, {'connected_gene': 'MAATS1', 'score': 9.77}, {'connected_gene': 'PLA1A', 'score': 5.57}, {'connected_gene': 'ARHGAP31', 'score': 5.12}, {'connected_gene': 'GSK3B', 'score': 1.45}, {'connected_gene': 'GC03M119637', 'score': 0.44}, {'connected_gene': 'LOC105374062', 'score': 0.34}]
chr3	GH03I120422	120422912	120428399	0.86	[{'connected_gene': 'FSTL1', 'score': 12.96}, {'connected_gene': 'GPR156', 'score': 12.14}, {'connected_gene': 'LOC100130701', 'score': 7.46}, {'connected_gene': 'LRRC58', 'score': 4.71}, {'connected_gene': 'GSK3B', 'score': 4.42}, {'connected_gene': 'ADPRH', 'score': 4.13}, {'connected_gene': 'MIR198', 'score': 0.31}]
chr3	GH03I120143	120143820	120149742	1.5	[{'connected_gene': 'LOC105374065', 'score': 550.77}, {'connected_gene': 'GSK3B', 'score': 9.24}, {'connected_gene': 'LOC100130701', 'score': 6.78}, {'connected_gene': 'GPR156', 'score': 5.01}, {'connected_gene': 'COX17', 'score': 1.76}, {'connected_gene': 'PIR46565', 'score': 0.77}]
chr3	GH03I119823	119823927	119824176	0.4	[{'connected_gene': 'PHBP8', 'score': 0.29}, {'connected_gene': 'GC03P119973', 'score': 0.11}, {'connected_gene': 'GC03M119752', 'score': 0.07}, {'connected_gene': 'GSK3B', 'score': 0.06}]
chr3	GH03I120169	120169370	120172429	0.82	[{'connected_gene': 'LOC100130701', 'score': 24.34}, {'connected_gene': 'GSK3B', 'score': 8.27}, {'connected_gene': 'PIR46565', 'score': 0.34}, {'connected_gene': 'LOC105374065', 'score': 0.31}, {'connected_gene': 'GC03P120211', 'score': 0.28}, {'connected_gene': 'GPR156', 'score': 0.14}]
chr3	GH03I119548	119548975	119552269	0.69	[{'connected_gene': 'GC03M119536', 'score': 550.77}, {'connected_gene': 'POGLUT1', 'score': 6.22}, {'connected_gene': 'TIMMDC1', 'score': 5.95}, {'connected_gene': 'GSK3B', 'score': 4.4}, {'connected_gene': 'CD80', 'score': 0.44}, {'connected_gene': 'CSRP2P1', 'score': 0.37}]
chr3	GH03I120111	120111090	120115489	0.89	[{'connected_gene': 'GC03M120113', 'score': 550.77}, {'connected_gene': 'GSK3B', 'score': 5.81}, {'connected_gene': 'LOC100130701', 'score': 5.61}, {'connected_gene': 'GPR156', 'score': 4.69}, {'connected_gene': 'PIR36596', 'score': 0.77}, {'connected_gene': 'ENSG00000242622', 'score': 0.37}]
chr3	GH03I119974	119974138	119975317	0.43	[{'connected_gene': 'GC03P119973', 'score': 550.77}, {'connected_gene': 'GSK3B', 'score': 10.25}, {'connected_gene': 'LOC100129707', 'score': 0.23}, {'connected_gene': 'GC03M119752', 'score': 0.14}]
chr3	GH03I120079	120079377	120079440	0.22	[{'connected_gene': 'GC03M119752', 'score': 0.77}, {'connected_gene': 'GSK3B', 'score': 0.37}, {'connected_gene': 'ENSG00000241546', 'score': 0.28}]
chr3	GH03I119937	119937196	119937983	0.63	[{'connected_gene': 'GC03P119973', 'score': 0.28}, {'connected_gene': 'PHBP8', 'score': 0.11}, {'connected_gene': 'GC03M119752', 'score': 0.11}, {'connected_gene': 'GSK3B', 'score': 0.1}]
chr3	GH03I119892	119892000	119892400	0.86	[{'connected_gene': 'GC03P119973', 'score': 0.18}, {'connected_gene': 'PHBP8', 'score': 0.15}, {'connected_gene': 'GC03M119752', 'score': 0.08}, {'connected_gene': 'GSK3B', 'score': 0.08}]
chr3	GH03I120028	120028601	120028800	0.2	[{'connected_gene': 'GC03P120029', 'score': 550.77}, {'connected_gene': 'LOC100129707', 'score': 550.77}, {'connected_gene': 'GSK3B', 'score': 5.97}, {'connected_gene': 'GC03M119752', 'score': 0.23}, {'connected_gene': 'GC03P119973', 'score': 0.22}]
chr3	GH03I119973	119973474	119973623	0.72	[{'connected_gene': 'GC03P119973', 'score': 550.77}, {'connected_gene': 'LOC100129707', 'score': 0.22}, {'connected_gene': 'GC03M119752', 'score': 0.14}, {'connected_gene': 'GSK3B', 'score': 0.13}]