PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000468542	[[160156788, 160156974], [160203146, 160203561]]	[[160156788, 160156974], [160203146, 160203164]]
ENST00000543469	[[160150232, 160153680], [160156019, 160156974], [160166513, 160166725]]	[[160153660, 160153680], [160156019, 160156971]]
ENST00000309784	[[160153290, 160156974], [160166513, 160166583], [160167504, 160167617]]	[[160155759, 160156971]]
ENST00000479460	[[160156438, 160156974], [160166513, 160166583], [160167259, 160167513]]	[[160156438, 160156971]]
ENST00000471396	[[160156506, 160156974], [160167471, 160167551]]	[[160156506, 160156971]]
ENST00000496222	[[160156518, 160156974], [160166513, 160166583], [160167471, 160167548]]	[[160156518, 160156974], [160166513, 160166583], [160167471, 160167482]]
ENST00000471155	[[160156628, 160156974], [160165519, 160165630], [160166513, 160166583], [160167504, 160167553]]	[[160156628, 160156971]]
ENST00000494486	[[160156636, 160156974], [160166513, 160166583], [160167232, 160167401]]	[[160156636, 160156971]]
NM_173084	[[160153290, 160156974], [160166513, 160166583], [160167504, 160167626]]	[[160155759, 160156971]]

Promoter

Chrom	Start	End	Description
chr3	160167301	160167369	CAGE_peak_2_at_TRIM59_5end
chr3	160167508	160167517	CAGE_peak_5_at_TRIM59_5end
chr3	160167525	160167536	CAGE_peak_3_at_TRIM59_5end
chr3	160167540	160167598	CAGE_peak_1_at_TRIM59_5end
chr3	160203278	160203289	CAGE_peak_8_at_TRIM59_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I160506	160506662	160508197	0.77	[{'connected_gene': 'SCARNA7', 'score': 0.44}, {'connected_gene': 'GC03M160515', 'score': 0.44}, {'connected_gene': 'TRIM59', 'score': 0.34}, {'connected_gene': 'KPNA4', 'score': 0.22}]
chr3	GH03I160500	160500179	160500542	0.4	[{'connected_gene': 'SCARNA7', 'score': 0.39}, {'connected_gene': 'GC03M160515', 'score': 0.39}, {'connected_gene': 'TRIM59', 'score': 0.39}, {'connected_gene': 'KPNA4', 'score': 0.2}]
chr3	GH03I160501	160501803	160502015	0.4	[{'connected_gene': 'SCARNA7', 'score': 0.39}, {'connected_gene': 'GC03M160515', 'score': 0.39}, {'connected_gene': 'TRIM59', 'score': 0.37}, {'connected_gene': 'KPNA4', 'score': 0.21}]
chr3	GH03I160461	160461153	160467966	0.31	[{'connected_gene': 'B3GAT3P1', 'score': 12.61}, {'connected_gene': 'TRIM59', 'score': 12.2}, {'connected_gene': 'SCARNA7', 'score': 10.74}, {'connected_gene': 'IFT80', 'score': 7.64}, {'connected_gene': 'SMC4', 'score': 6.09}, {'connected_gene': 'SPTSSB', 'score': 4.8}, {'connected_gene': 'GC03M160475', 'score': 0.44}, {'connected_gene': 'GC03P160455', 'score': 0.39}, {'connected_gene': 'PIR52189', 'score': 0.39}, {'connected_gene': 'GC03P160454', 'score': 0.39}]
chr3	GH03I160454	160454460	160456502	0.2	[{'connected_gene': 'B3GAT3P1', 'score': 12.68}, {'connected_gene': 'TRIM59', 'score': 12.44}, {'connected_gene': 'SCARNA7', 'score': 10.33}, {'connected_gene': 'IFT80', 'score': 7.83}, {'connected_gene': 'SMC4', 'score': 6.11}, {'connected_gene': 'GC03P160455', 'score': 0.77}, {'connected_gene': 'PIR52189', 'score': 0.77}, {'connected_gene': 'GC03P160454', 'score': 0.77}, {'connected_gene': 'GC03M160475', 'score': 0.37}]
chr3	GH03I160452	160452206	160454097	0.52	[{'connected_gene': 'B3GAT3P1', 'score': 560.19}, {'connected_gene': 'GC03P160455', 'score': 550.77}, {'connected_gene': 'PIR52189', 'score': 550.77}, {'connected_gene': 'GC03P160454', 'score': 550.77}, {'connected_gene': 'TRIM59', 'score': 12.44}, {'connected_gene': 'SCARNA7', 'score': 10.32}, {'connected_gene': 'IFT80', 'score': 6.96}, {'connected_gene': 'GC03M160475', 'score': 0.37}]
chr3	GH03I160457	160457440	160459298	0.56	[{'connected_gene': 'TRIM59', 'score': 12.46}, {'connected_gene': 'SCARNA7', 'score': 10.33}, {'connected_gene': 'B3GAT3P1', 'score': 8.69}, {'connected_gene': 'IFT80', 'score': 7.05}, {'connected_gene': 'GC03P160455', 'score': 0.44}, {'connected_gene': 'PIR52189', 'score': 0.44}, {'connected_gene': 'GC03P160454', 'score': 0.44}, {'connected_gene': 'GC03M160475', 'score': 0.39}]
chr3	GH03I160460	160460142	160460390	0.55	[{'connected_gene': 'TRIM59', 'score': 11.77}, {'connected_gene': 'SCARNA7', 'score': 10.54}, {'connected_gene': 'GC03P160455', 'score': 0.44}, {'connected_gene': 'PIR52189', 'score': 0.44}, {'connected_gene': 'GC03P160454', 'score': 0.44}, {'connected_gene': 'GC03M160475', 'score': 0.39}]
chr3	GH03I160486	160486600	160486800	0.54	[{'connected_gene': 'TRIM59', 'score': 550.77}, {'connected_gene': 'SCARNA7', 'score': 0.31}, {'connected_gene': 'GC03M160515', 'score': 0.31}]
chr3	GH03I160485	160485401	160486400	0.76	[{'connected_gene': 'TRIM59', 'score': 550.77}, {'connected_gene': 'SCARNA7', 'score': 0.31}, {'connected_gene': 'GC03M160515', 'score': 0.31}]
chr3	GH03I160446	160446801	160452078	2.46	[{'connected_gene': 'TRIM59', 'score': 562.42}, {'connected_gene': 'ENSG00000248710', 'score': 550.77}, {'connected_gene': 'RPL23AP42', 'score': 26.1}, {'connected_gene': 'B3GAT3P1', 'score': 13.98}, {'connected_gene': 'SCARNA7', 'score': 10.32}, {'connected_gene': 'SMC4', 'score': 6.12}, {'connected_gene': 'GC03P160415', 'score': 0.28}]
chr3	GH03I160472	160472769	160475191	0.54	[{'connected_gene': 'RNU7-136P', 'score': 550.77}, {'connected_gene': 'GC03M160475', 'score': 550.77}, {'connected_gene': 'B3GAT3P1', 'score': 12.11}, {'connected_gene': 'TRIM59', 'score': 0.39}]
chr3	GH03I160444	160444593	160444742	0.77	[{'connected_gene': 'ENSG00000248710', 'score': 0.44}, {'connected_gene': 'GC03P160415', 'score': 0.29}, {'connected_gene': 'TRIM59', 'score': 0.26}]