PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000416569	[[10754032, 10756426], [10782143, 10782340], [11058084, 11058875]]	[[10755461, 10756426], [10782143, 10782340], [11058084, 11058848]]
ENST00000529336	[[10969154, 10969402], [10971381, 10971602], [11058084, 11058343]]	[[10971583, 10971602], [11058084, 11058343]]
ENST00000382461	[[10753554, 10756426], [10782143, 10782340], [10859897, 10859991]]	[[10755461, 10756426], [10782143, 10782340], [10859897, 10859991]]
ENST00000304437	[[10753664, 10756426], [10782143, 10782340], [10859897, 10859991]]	[[10755461, 10756426], [10782143, 10782267]]
ENST00000297303	[[11051944, 11052730], [11058084, 11058848]]	[[11052630, 11052730], [11058084, 11058848]]
NM_173683	[[10753653, 10756426], [10782143, 10782340], [11058084, 11058875]]	[[10755461, 10756426], [10782143, 10782340], [11058084, 11058848]]
NR_138152	[[10969230, 10969402], [10971381, 10971602], [11052599, 11052730], [11058084, 11058875]]	None
NR_138154	[[10969230, 10969402], [10971381, 10971602], [11058084, 11058875]]	None
NR_138153	[[10969230, 10969402], [10971530, 10971602], [11058084, 11058875]]	None

Promoter

Chrom	Start	End	Description
chr8	11058847	11058887	CAGE_peak_2_at_XKR6_5end
chr8	11059308	11059349	CAGE_peak_1_at_XKR6_5end
chr8	11059370	11059381	CAGE_peak_4_at_XKR6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I011455	11455889	11458985	2.16	[{'connected_gene': 'FAM167A', 'score': 574.87}, {'connected_gene': 'BLK', 'score': 11.27}, {'connected_gene': 'LOC105379241', 'score': 11.15}, {'connected_gene': 'ENSG00000255518', 'score': 11.14}, {'connected_gene': 'ENSG00000255354', 'score': 11.14}, {'connected_gene': 'ENSG00000255310', 'score': 7.73}, {'connected_gene': 'XKR6', 'score': 3.25}, {'connected_gene': 'MTMR9', 'score': 2.21}, {'connected_gene': 'PIR35143', 'score': 0.29}]
chr8	GH08I011464	11464353	11468260	2.46	[{'connected_gene': 'FAM167A', 'score': 567.44}, {'connected_gene': 'PINX1', 'score': 13.36}, {'connected_gene': 'LOC101929290', 'score': 13.08}, {'connected_gene': 'LOC105379241', 'score': 12.35}, {'connected_gene': 'ENSG00000255310', 'score': 8.15}, {'connected_gene': 'MTMR9', 'score': 1.91}, {'connected_gene': 'NEIL2', 'score': 1.19}, {'connected_gene': 'XKR6', 'score': 1.18}, {'connected_gene': 'PIR35143', 'score': 0.26}]
chr8	GH08I010972	10972411	10972500	0.78	[{'connected_gene': 'LINC00529', 'score': 9.89}, {'connected_gene': 'GC08P010967', 'score': 0.44}, {'connected_gene': 'PIR55470', 'score': 0.44}, {'connected_gene': 'MIR598', 'score': 0.21}, {'connected_gene': 'XKR6', 'score': 0.07}]
chr8	GH08I010990	10990271	10990420	0.95	[{'connected_gene': 'MIR598', 'score': 11.96}, {'connected_gene': 'LINC00529', 'score': 9.94}, {'connected_gene': 'GC08P010967', 'score': 0.34}, {'connected_gene': 'PIR55470', 'score': 0.34}, {'connected_gene': 'XKR6', 'score': 0.08}]
chr8	GH08I011050	11050031	11050140	0.2	[{'connected_gene': 'MIR598', 'score': 0.39}, {'connected_gene': 'LOC101929269', 'score': 0.37}, {'connected_gene': 'XKR6', 'score': 0.1}]
chr8	GH08I011013	11013982	11017154	1.49	[{'connected_gene': 'MTMR9', 'score': 10.69}, {'connected_gene': 'ENSG00000269918', 'score': 9.04}, {'connected_gene': 'ENSG00000255310', 'score': 8.7}, {'connected_gene': 'XKR6', 'score': 1.27}, {'connected_gene': 'MIR598', 'score': 0.37}, {'connected_gene': 'GC08P010967', 'score': 0.25}, {'connected_gene': 'PIR55470', 'score': 0.25}]
chr8	GH08I011178	11178857	11179041	0.33	[{'connected_gene': 'XKR6', 'score': 14.26}, {'connected_gene': 'ENSG00000254936', 'score': 11.31}, {'connected_gene': 'MTMR9', 'score': 1.82}, {'connected_gene': 'RPL17P29', 'score': 0.77}, {'connected_gene': 'GC08M011176', 'score': 0.44}]
chr8	GH08I011199	11199067	11202461	1.97	[{'connected_gene': 'XKR6', 'score': 550.77}, {'connected_gene': 'GC08P011201', 'score': 550.77}, {'connected_gene': 'PINX1', 'score': 15.39}, {'connected_gene': 'LOC101929290', 'score': 13.49}, {'connected_gene': 'ENSG00000254936', 'score': 10.52}, {'connected_gene': 'ENSG00000269918', 'score': 6.84}, {'connected_gene': 'GC08M011176', 'score': 0.39}]
chr8	GH08I011053	11053451	11053600	0.31	[{'connected_gene': 'XKR6', 'score': 9.81}, {'connected_gene': 'ENSG00000254936', 'score': 9.78}, {'connected_gene': 'LOC101929269', 'score': 0.39}, {'connected_gene': 'MIR598', 'score': 0.37}]
chr8	GH08I010627	10627942	10632899	0.92	[{'connected_gene': 'LOC105379241', 'score': 16.32}, {'connected_gene': 'ENSG00000269954', 'score': 12.68}, {'connected_gene': 'ENSG00000269918', 'score': 5.23}, {'connected_gene': 'ENSG00000272505', 'score': 5.13}, {'connected_gene': 'PRSS51', 'score': 4.82}, {'connected_gene': 'XKR6', 'score': 4.54}, {'connected_gene': 'ENSG00000255310', 'score': 4.38}, {'connected_gene': 'MIR4286', 'score': 0.28}, {'connected_gene': 'LOC105379237', 'score': 0.25}, {'connected_gene': 'RP1L1', 'score': 0.18}]
chr8	GH08I011063	11063567	11067759	1.01	[{'connected_gene': 'LOC101929269', 'score': 550.77}, {'connected_gene': 'ENSG00000255310', 'score': 18.94}, {'connected_gene': 'ENSG00000269954', 'score': 10.34}, {'connected_gene': 'ENSG00000254936', 'score': 10.33}, {'connected_gene': 'ENSG00000269918', 'score': 7.62}, {'connected_gene': 'MIR598', 'score': 0.29}, {'connected_gene': 'XKR6', 'score': 0.12}]
chr8	GH08I011092	11092401	11092800	0.75	[{'connected_gene': 'LOC101929269', 'score': 12.06}, {'connected_gene': 'XKR6', 'score': 11.15}, {'connected_gene': 'ENSG00000254936', 'score': 10.96}, {'connected_gene': 'ENSG00000269918', 'score': 0.39}]
chr8	GH08I011174	11174654	11175023	0.22	[{'connected_gene': 'RPL17P29', 'score': 550.77}, {'connected_gene': 'ENSG00000255310', 'score': 15.16}, {'connected_gene': 'XKR6', 'score': 11.39}, {'connected_gene': 'ENSG00000254936', 'score': 11.32}, {'connected_gene': 'ENSG00000254556', 'score': 0.28}]
chr8	GH08I011051	11050201	11050400	0.2	[{'connected_gene': 'ENSG00000269918', 'score': 12.2}, {'connected_gene': 'MIR598', 'score': 0.39}, {'connected_gene': 'LOC101929269', 'score': 0.37}, {'connected_gene': 'XKR6', 'score': 0.1}]
chr8	GH08I011168	11168344	11169753	0.31	[{'connected_gene': 'ENSG00000254936', 'score': 11.29}, {'connected_gene': 'XKR6', 'score': 11.18}, {'connected_gene': 'ENSG00000269918', 'score': 6.41}, {'connected_gene': 'RPL17P29', 'score': 0.44}, {'connected_gene': 'ENSG00000254556', 'score': 0.29}]
chr8	GH08I011197	11197452	11197601	0.56	[{'connected_gene': 'ENSG00000254936', 'score': 10.96}, {'connected_gene': 'XKR6', 'score': 0.77}, {'connected_gene': 'GC08P011201', 'score': 0.77}, {'connected_gene': 'GC08M011176', 'score': 0.39}]
chr8	GH08I011123	11123257	11125692	0.83	[{'connected_gene': 'ENSG00000254936', 'score': 550.77}, {'connected_gene': 'ENSG00000255310', 'score': 19.1}, {'connected_gene': 'ENSG00000269918', 'score': 12.9}, {'connected_gene': 'XKR6', 'score': 0.18}]
chr8	GH08I010907	10907110	10907350	0.23	[{'connected_gene': 'PIR49045', 'score': 0.29}, {'connected_gene': 'GC08P010967', 'score': 0.22}, {'connected_gene': 'PIR55470', 'score': 0.22}, {'connected_gene': 'XKR6', 'score': 0.06}]
chr8	GH08I010928	10928511	10928801	1.12	[{'connected_gene': 'ENSG00000269918', 'score': 11.7}, {'connected_gene': 'GC08P010967', 'score': 0.28}, {'connected_gene': 'PIR55470', 'score': 0.28}, {'connected_gene': 'PIR49045', 'score': 0.23}, {'connected_gene': 'XKR6', 'score': 0.06}]
chr8	GH08I010965	10965650	10965862	0.41	[{'connected_gene': 'GC08P010967', 'score': 550.77}, {'connected_gene': 'PIR55470', 'score': 550.77}, {'connected_gene': 'C8orf74', 'score': 26.34}, {'connected_gene': 'PRSS55', 'score': 16.61}, {'connected_gene': 'ENSG00000254936', 'score': 9.73}, {'connected_gene': 'PIR49045', 'score': 0.16}, {'connected_gene': 'XKR6', 'score': 0.07}]
chr8	GH08I011047	11047831	11048411	0.49	[{'connected_gene': 'ENSG00000255310', 'score': 5.81}, {'connected_gene': 'LOC105379241', 'score': 5.08}, {'connected_gene': 'MIR598', 'score': 0.39}, {'connected_gene': 'LOC101929269', 'score': 0.37}, {'connected_gene': 'XKR6', 'score': 0.1}]
chr8	GH08I011138	11138851	11139903	0.43	[{'connected_gene': 'ENSG00000254556', 'score': 550.77}, {'connected_gene': 'LOC105379241', 'score': 13.27}, {'connected_gene': 'XKR6', 'score': 10.26}, {'connected_gene': 'ENSG00000255518', 'score': 9.65}, {'connected_gene': 'RPL17P29', 'score': 0.28}]
chr8	GH08I011007	11007831	11007920	0.2	[{'connected_gene': 'ENSG00000254936', 'score': 10.18}, {'connected_gene': 'LOC101929290', 'score': 4.66}, {'connected_gene': 'MIR598', 'score': 0.31}, {'connected_gene': 'GC08P010967', 'score': 0.26}, {'connected_gene': 'PIR55470', 'score': 0.26}, {'connected_gene': 'XKR6', 'score': 0.08}]
chr8	GH08I011059	11059001	11060000	0.85	[{'connected_gene': 'ENSG00000269918', 'score': 13.3}, {'connected_gene': 'ENSG00000255310', 'score': 11.97}, {'connected_gene': 'ENSG00000254936', 'score': 10.32}, {'connected_gene': 'LOC101929269', 'score': 0.44}, {'connected_gene': 'MIR598', 'score': 0.34}, {'connected_gene': 'XKR6', 'score': 0.11}]