PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000436261	[[44540461, 44542126], [44544033, 44544160], [44544456, 44544548], [44552044, 44552128]]	[[44540636, 44542126], [44544033, 44544160], [44544456, 44544471]]
ENST00000489411	[[44541014, 44542129], [44544033, 44544160], [44552044, 44552128]]	None
ENST00000463067	[[44541067, 44544602]]	None
NM_001287349	[[44540461, 44540791], [44540793, 44542126], [44544033, 44544160], [44544456, 44544548], [44552044, 44552132]]	[[44540673, 44540791], [44540793, 44542126], [44544033, 44544160], [44544456, 44544471]]

Promoter

Chrom	Start	End	Description
chr3	44552063	44552064	CAGE_peak_4_at_ZNF852_5end
chr3	44552073	44552084	CAGE_peak_2_at_ZNF852_5end
chr3	44552094	44552131	CAGE_peak_1_at_ZNF852_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I045130	45130418	45141564	1.72	[{'connected_gene': 'ZNF502', 'score': 25.82}, {'connected_gene': 'ZNF852', 'score': 25.25}, {'connected_gene': 'RN7SL145P', 'score': 24.84}, {'connected_gene': 'ZNF35', 'score': 19.15}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'RNU5B-3P', 'score': 10.74}, {'connected_gene': 'CLEC3B', 'score': 10.71}, {'connected_gene': 'TMEM158', 'score': 10.51}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZDHHC3', 'score': 10.13}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'ENSG00000202268', 'score': 9.78}, {'connected_gene': 'CDCP1', 'score': 9.36}, {'connected_gene': 'LOC105377059', 'score': 0.2}]
chr3	GH03I045052	45052688	45066370	1.72	[{'connected_gene': 'ZNF502', 'score': 29.2}, {'connected_gene': 'ZNF852', 'score': 25.25}, {'connected_gene': 'RN7SL145P', 'score': 24.84}, {'connected_gene': 'CLEC3B', 'score': 19.26}, {'connected_gene': 'ZNF35', 'score': 19.16}, {'connected_gene': 'CDCP1', 'score': 16.37}, {'connected_gene': 'ZNF197', 'score': 15.66}, {'connected_gene': 'ZNF660', 'score': 15.3}, {'connected_gene': 'EXOSC7', 'score': 12.21}, {'connected_gene': 'RNU5B-3P', 'score': 11.07}, {'connected_gene': 'TMEM158', 'score': 10.63}, {'connected_gene': 'ENSG00000202268', 'score': 10.23}, {'connected_gene': 'ZDHHC3', 'score': 10.2}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'LIMD1', 'score': 9.48}, {'connected_gene': 'TMEM42', 'score': 6.46}, {'connected_gene': 'KIAA1143', 'score': 5.3}, {'connected_gene': 'ZNF501', 'score': 4.21}, {'connected_gene': 'LOC105377059', 'score': 0.44}]
chr3	GH03I045107	45107997	45108823	0.38	[{'connected_gene': 'ZNF502', 'score': 17.75}, {'connected_gene': 'RN7SL145P', 'score': 16.63}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'CDCP1', 'score': 0.28}, {'connected_gene': 'LOC105377059', 'score': 0.26}]
chr3	GH03I045103	45103514	45107225	1.45	[{'connected_gene': 'ZNF502', 'score': 17.76}, {'connected_gene': 'RN7SL145P', 'score': 16.63}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'TMEM158', 'score': 4.98}, {'connected_gene': 'CDCP1', 'score': 1.67}, {'connected_gene': 'LOC105377059', 'score': 0.28}]
chr3	GH03I044712	44712049	44713600	1.83	[{'connected_gene': 'ZNF502', 'score': 578.17}, {'connected_gene': 'SOCS5P3', 'score': 550.77}, {'connected_gene': 'ZNF852', 'score': 13.1}, {'connected_gene': 'ZNF35', 'score': 10.96}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'LOC105377056', 'score': 0.37}]
chr3	GH03I044648	44648109	44649801	1.94	[{'connected_gene': 'ZNF35', 'score': 561.52}, {'connected_gene': 'ZNF852', 'score': 13.13}, {'connected_gene': 'RPS24P8', 'score': 12.77}, {'connected_gene': 'ZNF501', 'score': 12.23}, {'connected_gene': 'ZNF197', 'score': 10.38}, {'connected_gene': 'ZNF502', 'score': 10.09}, {'connected_gene': 'ZDHHC3', 'score': 10.08}, {'connected_gene': 'KIAA1143', 'score': 5.05}, {'connected_gene': 'ENSG00000272077', 'score': 0.37}, {'connected_gene': 'ENSG00000236869', 'score': 0.28}]
chr3	GH03I044962	44962531	44970626	1.35	[{'connected_gene': 'TGM4', 'score': 16.63}, {'connected_gene': 'RN7SL145P', 'score': 12.33}, {'connected_gene': 'ZNF852', 'score': 11.62}, {'connected_gene': 'CLEC3B', 'score': 11.24}, {'connected_gene': 'ZNF445', 'score': 11.23}, {'connected_gene': 'LIMD1', 'score': 11.19}, {'connected_gene': 'EXOSC7', 'score': 10.83}, {'connected_gene': 'ENSG00000235845', 'score': 10.65}, {'connected_gene': 'ZNF502', 'score': 10.41}, {'connected_gene': 'RNU5B-3P', 'score': 10.06}, {'connected_gene': 'ZDHHC3', 'score': 0.44}, {'connected_gene': 'RPL12P44', 'score': 0.31}]
chr3	GH03I044760	44760800	44763306	2.09	[{'connected_gene': 'KIAA1143', 'score': 572.53}, {'connected_gene': 'KIF15', 'score': 550.77}, {'connected_gene': 'ZNF852', 'score': 23.66}, {'connected_gene': 'RN7SL145P', 'score': 10.5}, {'connected_gene': 'HNRNPA1P77', 'score': 0.18}]
chr3	GH03I043689	43689212	43699626	2.28	[{'connected_gene': 'ABHD5', 'score': 555.66}, {'connected_gene': 'ZNF35', 'score': 13.11}, {'connected_gene': 'ZNF852', 'score': 10.17}, {'connected_gene': 'ZNF660', 'score': 4.8}, {'connected_gene': 'ENSG00000261786', 'score': 4.19}, {'connected_gene': 'ANO10', 'score': 0.77}, {'connected_gene': 'PIR40588', 'score': 0.29}, {'connected_gene': 'GC03M043165', 'score': 0.06}]
chr3	GH03I043584	43584149	43584600	1.12	[{'connected_gene': 'NKTR', 'score': 24.97}, {'connected_gene': 'ZNF662', 'score': 21.2}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'SNRK-AS1', 'score': 11.24}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'RPL18AP9', 'score': 0.15}, {'connected_gene': 'TUBAP3', 'score': 0.15}, {'connected_gene': 'ANO10', 'score': 0.14}, {'connected_gene': 'GC03M043165', 'score': 0.05}]
chr3	GH03I043522	43522560	43523894	0.93	[{'connected_gene': 'NKTR', 'score': 24.98}, {'connected_gene': 'ZNF662', 'score': 21.2}, {'connected_gene': 'SNRK-AS1', 'score': 14.87}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'RPL18AP9', 'score': 0.28}, {'connected_gene': 'ANO10', 'score': 0.1}, {'connected_gene': 'TUBAP3', 'score': 0.1}, {'connected_gene': 'GC03M043165', 'score': 0.05}]
chr3	GH03I044451	44451158	44452236	0.2	[{'connected_gene': 'ZNF445', 'score': 11.77}, {'connected_gene': 'ZNF852', 'score': 11.35}, {'connected_gene': 'GC03M044441', 'score': 0.44}]
chr3	GH03I044233	44233079	44238725	1.17	[{'connected_gene': 'ZNF660', 'score': 39.63}, {'connected_gene': 'ZNF502', 'score': 20.16}, {'connected_gene': 'ZNF197', 'score': 19.44}, {'connected_gene': 'ZKSCAN7', 'score': 12.54}, {'connected_gene': 'ZNF445', 'score': 11.38}, {'connected_gene': 'ZNF852', 'score': 10.59}, {'connected_gene': 'RNU6-367P', 'score': 9.97}, {'connected_gene': 'ZNF35', 'score': 9.79}, {'connected_gene': 'SNRK-AS1', 'score': 9.72}, {'connected_gene': 'MIR138-1', 'score': 9.49}, {'connected_gene': 'TCAIM', 'score': 7.76}, {'connected_gene': 'ENSG00000271941', 'score': 5.94}, {'connected_gene': 'TOPAZ1', 'score': 0.44}, {'connected_gene': 'PIR53341', 'score': 0.13}]
chr3	GH03I044341	44341787	44343000	0.58	[{'connected_gene': 'ZNF660', 'score': 42.5}, {'connected_gene': 'ZNF852', 'score': 10.52}, {'connected_gene': 'ZNF445', 'score': 10.11}, {'connected_gene': 'ZKSCAN7', 'score': 9.36}, {'connected_gene': 'ZNF197', 'score': 8.43}, {'connected_gene': 'TCAIM', 'score': 0.77}, {'connected_gene': 'LOC105377055', 'score': 0.77}, {'connected_gene': 'LINC01988', 'score': 0.18}]
chr3	GH03I044509	44509381	44512017	1.98	[{'connected_gene': 'ZNF852', 'score': 563.79}, {'connected_gene': 'ZNF660', 'score': 50.7}, {'connected_gene': 'ZNF197', 'score': 18.77}, {'connected_gene': 'ZNF35', 'score': 10.87}, {'connected_gene': 'ZDHHC3', 'score': 10.07}, {'connected_gene': 'ZNF502', 'score': 9.96}, {'connected_gene': 'EI24P3', 'score': 0.37}]
chr3	GH03I045269	45269566	45270695	0.89	[{'connected_gene': 'ZNF852', 'score': 13.04}, {'connected_gene': 'TMEM158', 'score': 11.24}, {'connected_gene': 'ZNF35', 'score': 10.77}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'RN7SL145P', 'score': 10.05}, {'connected_gene': 'ZNF502', 'score': 9.91}, {'connected_gene': 'CCR3', 'score': 4.04}, {'connected_gene': 'ENSG00000202268', 'score': 0.39}, {'connected_gene': 'GC03M045255', 'score': 0.39}, {'connected_gene': 'LOC105377061', 'score': 0.28}]
chr3	GH03I044104	44104604	44105866	0.74	[{'connected_gene': 'ZNF852', 'score': 11.87}, {'connected_gene': 'RNU6-367P', 'score': 11.24}, {'connected_gene': 'ZNF502', 'score': 10.9}, {'connected_gene': 'SNRK', 'score': 10.31}, {'connected_gene': 'ENSG00000261786', 'score': 7.47}, {'connected_gene': 'GC03P044115', 'score': 0.44}, {'connected_gene': 'GC03M044082', 'score': 0.34}]
chr3	GH03I043767	43767725	43771957	1.75	[{'connected_gene': 'ZNF852', 'score': 19.44}, {'connected_gene': 'SNRK-AS1', 'score': 11.14}, {'connected_gene': 'ZNF445', 'score': 10.07}, {'connected_gene': 'ZNF662', 'score': 10.03}, {'connected_gene': 'ENSG00000235886', 'score': 0.39}, {'connected_gene': 'LOC105377054', 'score': 0.39}, {'connected_gene': 'GC03M043165', 'score': 0.08}]
chr3	GH03I044518	44518249	44518418	0.96	[{'connected_gene': 'ZNF852', 'score': 0.44}, {'connected_gene': 'EI24P3', 'score': 0.44}]
chr3	GH03I044337	44337275	44340862	2.09	[{'connected_gene': 'TCAIM', 'score': 550.77}, {'connected_gene': 'LOC105377055', 'score': 550.77}, {'connected_gene': 'ZNF660', 'score': 44.39}, {'connected_gene': 'ZNF852', 'score': 15.31}, {'connected_gene': 'ZNF35', 'score': 13.14}, {'connected_gene': 'SNRK-AS1', 'score': 12.19}, {'connected_gene': 'ZNF445', 'score': 10.74}, {'connected_gene': 'ZNF197', 'score': 7.35}, {'connected_gene': 'ENSG00000271941', 'score': 5.94}, {'connected_gene': 'ZNF502', 'score': 4.87}, {'connected_gene': 'LINC01988', 'score': 0.17}]
chr3	GH03I044974	44974043	44977602	2.21	[{'connected_gene': 'EXOSC7', 'score': 566.38}, {'connected_gene': 'ZDHHC3', 'score': 554.91}, {'connected_gene': 'ZNF445', 'score': 16.55}, {'connected_gene': 'RN7SL145P', 'score': 14.75}, {'connected_gene': 'CLEC3B', 'score': 11.34}, {'connected_gene': 'ZNF502', 'score': 11.08}, {'connected_gene': 'ZKSCAN7', 'score': 10.78}, {'connected_gene': 'ZNF852', 'score': 10.5}, {'connected_gene': 'RNU5B-3P', 'score': 9.69}, {'connected_gene': 'KIAA1143', 'score': 9.3}, {'connected_gene': 'ZNF197', 'score': 6.24}]
chr3	GH03I044729	44729001	44730400	2.03	[{'connected_gene': 'ZNF501', 'score': 550.77}, {'connected_gene': 'LOC105377056', 'score': 550.77}, {'connected_gene': 'KIAA1143', 'score': 20.81}, {'connected_gene': 'ZNF852', 'score': 13.09}, {'connected_gene': 'ZNF35', 'score': 10.92}, {'connected_gene': 'ZNF502', 'score': 10.24}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'PIR43736', 'score': 0.37}]
chr3	GH03I045117	45117655	45128322	1.63	[{'connected_gene': 'RN7SL145P', 'score': 33.45}, {'connected_gene': 'ZNF852', 'score': 31.56}, {'connected_gene': 'LIMD1', 'score': 20.77}, {'connected_gene': 'ZNF502', 'score': 20.45}, {'connected_gene': 'ZNF445', 'score': 18.34}, {'connected_gene': 'TMEM158', 'score': 17.84}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'FYCO1', 'score': 12.84}, {'connected_gene': 'CDCP1', 'score': 12.82}, {'connected_gene': 'RNU5B-3P', 'score': 10.33}, {'connected_gene': 'CLEC3B', 'score': 10.32}, {'connected_gene': 'XCR1', 'score': 10.29}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ENSG00000202268', 'score': 9.66}, {'connected_gene': 'LOC105377059', 'score': 0.23}]
chr3	GH03I044438	44438419	44441955	1.49	[{'connected_gene': 'LINC00694', 'score': 550.77}, {'connected_gene': 'ZNF660', 'score': 48.66}, {'connected_gene': 'ZNF197', 'score': 25.29}, {'connected_gene': 'ZNF852', 'score': 22.6}, {'connected_gene': 'ZNF502', 'score': 17.77}, {'connected_gene': 'ZNF445', 'score': 10.22}, {'connected_gene': 'ZNF35', 'score': 10.13}, {'connected_gene': 'GC03M044441', 'score': 0.44}]
chr3	GH03I044532	44532929	44533078	0.99	[{'connected_gene': 'ZNF197', 'score': 24.83}, {'connected_gene': 'ZNF852', 'score': 12.13}, {'connected_gene': 'ZKSCAN7', 'score': 11.23}, {'connected_gene': 'ENSG00000235845', 'score': 10.51}, {'connected_gene': 'TGM4', 'score': 10.51}, {'connected_gene': 'ZNF445', 'score': 10.46}, {'connected_gene': 'ZNF660', 'score': 10.35}, {'connected_gene': 'ZNF501', 'score': 10.05}, {'connected_gene': 'CLEC3B', 'score': 9.82}, {'connected_gene': 'RNU5B-3P', 'score': 9.81}, {'connected_gene': 'ZNF35', 'score': 9.64}, {'connected_gene': 'KIAA1143', 'score': 6.39}, {'connected_gene': 'LOC100419748', 'score': 0.77}]
chr3	GH03I044624	44624201	44626393	2.02	[{'connected_gene': 'ZNF197', 'score': 584.76}, {'connected_gene': 'ZNF197-AS1', 'score': 550.77}, {'connected_gene': 'ZNF35', 'score': 21.81}, {'connected_gene': 'ZNF852', 'score': 21.56}, {'connected_gene': 'KIAA1143', 'score': 14.13}, {'connected_gene': 'ZNF660', 'score': 11.28}, {'connected_gene': 'ZDHHC3', 'score': 10.08}, {'connected_gene': 'ZNF502', 'score': 10.05}, {'connected_gene': 'ZNF445', 'score': 10.0}, {'connected_gene': 'ENSG00000236869', 'score': 0.21}]
chr3	GH03I043685	43685888	43688788	0.93	[{'connected_gene': 'TUBAP3', 'score': 550.77}, {'connected_gene': 'ZNF662', 'score': 21.2}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SNRK-AS1', 'score': 11.22}, {'connected_gene': 'ZNF35', 'score': 10.08}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'ABHD5', 'score': 4.91}, {'connected_gene': 'ENSG00000261786', 'score': 4.34}, {'connected_gene': 'ANO10', 'score': 0.77}, {'connected_gene': 'RPL18AP9', 'score': 0.08}, {'connected_gene': 'GC03M043165', 'score': 0.06}]
chr3	GH03I043869	43869281	43874312	1.28	[{'connected_gene': 'ENSG00000261786', 'score': 21.02}, {'connected_gene': 'ZNF852', 'score': 11.86}, {'connected_gene': 'ZNF662', 'score': 11.35}, {'connected_gene': 'ZNF502', 'score': 10.89}, {'connected_gene': 'RNU6-367P', 'score': 10.69}, {'connected_gene': 'SNRK', 'score': 10.31}, {'connected_gene': 'MIR138-1', 'score': 10.29}, {'connected_gene': 'TOPAZ1', 'score': 9.7}, {'connected_gene': 'ANO10', 'score': 1.47}, {'connected_gene': 'GC03P043926', 'score': 0.23}, {'connected_gene': 'ENSG00000235886', 'score': 0.16}, {'connected_gene': 'GC03M043165', 'score': 0.15}]
chr3	GH03I044685	44685000	44686200	1.26	[{'connected_gene': 'ENSG00000236869', 'score': 550.77}, {'connected_gene': 'LOC101928592', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 24.18}, {'connected_gene': 'ZNF35', 'score': 21.76}, {'connected_gene': 'KIAA1143', 'score': 15.25}, {'connected_gene': 'ZNF852', 'score': 13.11}, {'connected_gene': 'KIF15', 'score': 11.25}, {'connected_gene': 'ZNF501', 'score': 11.14}, {'connected_gene': 'ZNF660', 'score': 10.61}, {'connected_gene': 'ZNF502', 'score': 10.19}, {'connected_gene': 'ZKSCAN7', 'score': 10.17}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'ZNF445', 'score': 8.93}, {'connected_gene': 'PIR62310', 'score': 0.77}]