PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000421515	[[23933554, 23934828], [23942298, 23942540], [23952301, 23952412], [23952819, 23952941], [23987813, 23988082]]	[[23934585, 23934828], [23942298, 23942540], [23952301, 23952395]]
ENST00000388759	[[23933150, 23934828], [23942298, 23942540], [23952301, 23952412], [23952819, 23952937], [23958274, 23958460]]	[[23934585, 23934828], [23942298, 23942540], [23952301, 23952395]]
ENST00000443659	[[23933551, 23934828], [23942298, 23942540], [23952301, 23952412], [23957445, 23958206]]	[[23934585, 23934828], [23942298, 23942540], [23952301, 23952395]]
ENST00000425478	[[23933571, 23934828], [23942298, 23942540], [23952301, 23952412], [23952819, 23952941], [23958274, 23958556]]	[[23934585, 23934828], [23942298, 23942540], [23952301, 23952395]]
ENST00000437230	[[23933587, 23934824], [23942294, 23942540], [23952301, 23952412], [23952819, 23952937], [23958274, 23958460]]	[[23934585, 23934824], [23942294, 23942540], [23952301, 23952395]]
ENST00000412028	[[23933797, 23934824], [23942294, 23942540], [23952301, 23952412], [23952819, 23952937], [23958351, 23958454]]	[[23934585, 23934824], [23942294, 23942540], [23952301, 23952395]]
ENST00000415901	[[23933800, 23934824], [23942294, 23942540], [23952301, 23952412], [23952819, 23952941], [23958274, 23958415]]	[[23934585, 23934824], [23942294, 23942540], [23952301, 23952395]]
ENST00000416026	[[23934555, 23934828], [23942298, 23942540], [23952301, 23952412], [23958274, 23958443]]	[[23934585, 23934828], [23942298, 23942540], [23952301, 23952395]]
NM_020345	[[23933571, 23934828], [23942298, 23942540], [23952301, 23952412], [23952819, 23952941], [23958274, 23958537]]	[[23934585, 23934828], [23942298, 23942540], [23952301, 23952395]]

Promoter

Chrom	Start	End	Description
chr3	23958374	23958395	CAGE_peak_3_at_NKIRAS1_5end
chr3	23958402	23958488	CAGE_peak_1_at_NKIRAS1_5end
chr3	23958506	23958550	CAGE_peak_2_at_NKIRAS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I023968	23968550	23968659	0.6	[{'connected_gene': 'NR1D2', 'score': 12.18}, {'connected_gene': 'NKIRAS1', 'score': 12.18}, {'connected_gene': 'RPL15', 'score': 11.46}, {'connected_gene': 'NPM1P23', 'score': 0.13}]
chr3	GH03I023999	23999200	23999401	0.78	[{'connected_gene': 'NR1D2', 'score': 11.23}, {'connected_gene': 'NKIRAS1', 'score': 11.23}, {'connected_gene': 'RPL15', 'score': 10.49}, {'connected_gene': 'NPM1P23', 'score': 0.15}]
chr3	GH03I023945	23944118	23944119	0.54	[{'connected_gene': 'NR1D2', 'score': 550.77}, {'connected_gene': 'NKIRAS1', 'score': 0.77}, {'connected_gene': 'RPL15', 'score': 0.31}]
chr3	GH03I023944	23944359	23948967	2.11	[{'connected_gene': 'NR1D2', 'score': 561.37}, {'connected_gene': 'NKIRAS1', 'score': 550.77}, {'connected_gene': 'NPM1P23', 'score': 0.1}]
chr3	GH03I023963	23963004	23964448	0.7	[{'connected_gene': 'RPL15', 'score': 11.47}, {'connected_gene': 'NR1D2', 'score': 0.37}, {'connected_gene': 'NKIRAS1', 'score': 0.37}, {'connected_gene': 'NPM1P23', 'score': 0.12}]
chr3	GH03I023952	23952750	23952899	0.65	[{'connected_gene': 'RPL15', 'score': 11.71}, {'connected_gene': 'NR1D2', 'score': 0.44}, {'connected_gene': 'NKIRAS1', 'score': 0.44}, {'connected_gene': 'NPM1P23', 'score': 0.11}]
chr3	GH03I023949	23949414	23950898	0.82	[{'connected_gene': 'RPL15', 'score': 11.73}, {'connected_gene': 'NR1D2', 'score': 0.77}, {'connected_gene': 'NKIRAS1', 'score': 0.77}, {'connected_gene': 'NPM1P23', 'score': 0.11}]
chr3	GH03I023958	23958027	23960257	1	[{'connected_gene': 'RPL15', 'score': 11.51}, {'connected_gene': 'NR1D2', 'score': 0.39}, {'connected_gene': 'NKIRAS1', 'score': 0.39}, {'connected_gene': 'NPM1P23', 'score': 0.12}]
chr3	GH03I023923	23923950	23924139	0.78	[{'connected_gene': 'RPL15', 'score': 0.44}, {'connected_gene': 'NR1D2', 'score': 0.34}, {'connected_gene': 'NKIRAS1', 'score': 0.34}]
chr3	GH03I023888	23888730	23888859	0.6	[{'connected_gene': 'RPL15', 'score': 13.4}, {'connected_gene': 'NKIRAS1', 'score': 13.31}, {'connected_gene': 'NR1D2', 'score': 11.03}, {'connected_gene': 'UBE2E1-AS1', 'score': 10.39}, {'connected_gene': 'UBE2E1', 'score': 10.39}, {'connected_gene': 'PIR33503', 'score': 0.77}, {'connected_gene': 'ARL4AP4', 'score': 0.44}]
chr3	GH03I023826	23826201	23826600	0.63	[{'connected_gene': 'RPL15', 'score': 11.02}, {'connected_gene': 'NKIRAS1', 'score': 10.99}, {'connected_gene': 'NR1D2', 'score': 10.55}, {'connected_gene': 'GC03P023841', 'score': 0.37}, {'connected_gene': 'UBE2E1-AS1', 'score': 0.37}, {'connected_gene': 'UBE2E1', 'score': 0.34}]
chr3	GH03I023825	23825201	23825600	0.43	[{'connected_gene': 'RPL15', 'score': 11.02}, {'connected_gene': 'NKIRAS1', 'score': 10.99}, {'connected_gene': 'NR1D2', 'score': 10.55}, {'connected_gene': 'GC03P023841', 'score': 0.37}, {'connected_gene': 'UBE2E1-AS1', 'score': 0.37}, {'connected_gene': 'UBE2E1', 'score': 0.37}]
chr3	GH03I023873	23873970	23875091	0.69	[{'connected_gene': 'RPL15', 'score': 11.54}, {'connected_gene': 'NKIRAS1', 'score': 11.47}, {'connected_gene': 'NR1D2', 'score': 11.17}, {'connected_gene': 'ARL4AP4', 'score': 0.77}, {'connected_gene': 'GC03M023860', 'score': 0.39}, {'connected_gene': 'UBE2E1', 'score': 0.2}]
chr3	GH03I023864	23864754	23866819	0.91	[{'connected_gene': 'RPL15', 'score': 11.8}, {'connected_gene': 'NKIRAS1', 'score': 11.74}, {'connected_gene': 'UBE2E1-AS1', 'score': 11.12}, {'connected_gene': 'UBE2E1', 'score': 11.12}, {'connected_gene': 'NR1D2', 'score': 11.06}, {'connected_gene': 'GC03M023860', 'score': 0.77}, {'connected_gene': 'ARL4AP4', 'score': 0.39}]
chr3	GH03I023858	23858816	23860473	0.43	[{'connected_gene': 'RPL15', 'score': 11.79}, {'connected_gene': 'NKIRAS1', 'score': 11.74}, {'connected_gene': 'UBE2E1-AS1', 'score': 11.24}, {'connected_gene': 'UBE2E1', 'score': 11.24}, {'connected_gene': 'NR1D2', 'score': 11.04}, {'connected_gene': 'GC03M023860', 'score': 0.77}, {'connected_gene': 'GC03P023854', 'score': 0.44}]
chr3	GH03I023914	23914801	23915000	0.38	[{'connected_gene': 'RPL15', 'score': 550.77}, {'connected_gene': 'PIR33503', 'score': 0.34}, {'connected_gene': 'NKIRAS1', 'score': 0.29}]
chr3	GH03I024160	24160559	24163340	0.56	[{'connected_gene': 'NKIRAS1', 'score': 9.61}, {'connected_gene': 'NR1D2', 'score': 9.51}, {'connected_gene': 'LOC101927854', 'score': 0.39}, {'connected_gene': 'GC03M024338', 'score': 0.1}, {'connected_gene': 'THRB', 'score': 0.06}]
chr3	GH03I023915	23915171	23919257	2.14	[{'connected_gene': 'NKIRAS1', 'score': 563.1}, {'connected_gene': 'RPL15', 'score': 550.77}, {'connected_gene': 'NR1D2', 'score': 13.1}]
chr3	GH03I023991	23991141	23992979	1.02	[{'connected_gene': 'NKIRAS1', 'score': 11.24}, {'connected_gene': 'RPL15', 'score': 11.17}, {'connected_gene': 'NPM1P23', 'score': 0.14}]
chr3	GH03I024233	24233653	24234163	0.38	[{'connected_gene': 'NKIRAS1', 'score': 10.85}, {'connected_gene': 'LOC101927854', 'score': 0.18}, {'connected_gene': 'GC03M024338', 'score': 0.14}, {'connected_gene': 'THRB', 'score': 0.07}]
chr3	GH03I024210	24210225	24211021	0.2	[{'connected_gene': 'NKIRAS1', 'score': 4.98}, {'connected_gene': 'LOC101927854', 'score': 0.22}, {'connected_gene': 'GC03M024338', 'score': 0.12}, {'connected_gene': 'THRB', 'score': 0.06}]
chr3	GH03I024018	24018801	24019000	0.2	[{'connected_gene': 'NKIRAS1', 'score': 0.19}, {'connected_gene': 'NPM1P23', 'score': 0.18}]
chr3	GH03I024011	24011077	24012064	0.59	[{'connected_gene': 'NKIRAS1', 'score': 0.21}, {'connected_gene': 'NPM1P23', 'score': 0.17}]
chr3	GH03I023829	23829298	23830399	0.96	[{'connected_gene': 'UBE2E1-AS1', 'score': 12.33}, {'connected_gene': 'UBE2E1', 'score': 12.33}, {'connected_gene': 'NR1D2', 'score': 11.42}, {'connected_gene': 'NKIRAS1', 'score': 11.42}, {'connected_gene': 'RPL15', 'score': 11.16}, {'connected_gene': 'GC03P023841', 'score': 0.39}]
chr3	GH03I023856	23856286	23858273	0.96	[{'connected_gene': 'UBE2E1-AS1', 'score': 11.24}, {'connected_gene': 'UBE2E1', 'score': 11.24}, {'connected_gene': 'RPL15', 'score': 11.17}, {'connected_gene': 'NKIRAS1', 'score': 11.12}, {'connected_gene': 'NR1D2', 'score': 10.85}, {'connected_gene': 'GC03P023854', 'score': 0.77}, {'connected_gene': 'GC03M023860', 'score': 0.77}]
chr3	GH03I023805	23805357	23812256	2.05	[{'connected_gene': 'UBE2E1-AS1', 'score': 550.77}, {'connected_gene': 'UBE2E1', 'score': 550.77}, {'connected_gene': 'RPL15', 'score': 23.15}, {'connected_gene': 'NKIRAS1', 'score': 10.52}, {'connected_gene': 'NR1D2', 'score': 10.12}, {'connected_gene': 'GC03P023841', 'score': 0.29}]
chr3	GH03I024047	24047092	24049204	0.9	[{'connected_gene': 'NPM1P23', 'score': 0.25}, {'connected_gene': 'NKIRAS1', 'score': 0.15}]
chr3	GH03I024087	24087130	24087332	0.31	[{'connected_gene': 'NPM1P23', 'score': 0.39}, {'connected_gene': 'NKIRAS1', 'score': 0.11}]
chr3	GH03I024042	24042146	24043623	0.31	[{'connected_gene': 'NPM1P23', 'score': 0.23}, {'connected_gene': 'NKIRAS1', 'score': 0.15}]
chr3	GH03I024060	24060150	24060319	0.38	[{'connected_gene': 'NPM1P23', 'score': 0.28}, {'connected_gene': 'NKIRAS1', 'score': 0.14}]
chr3	GH03I023880	23880823	23881220	0.31	[{'connected_gene': 'ARL4AP4', 'score': 550.77}, {'connected_gene': 'RPL15', 'score': 11.76}, {'connected_gene': 'NKIRAS1', 'score': 11.69}, {'connected_gene': 'NR1D2', 'score': 11.19}, {'connected_gene': 'PIR33503', 'score': 0.39}, {'connected_gene': 'UBE2E1', 'score': 0.18}]
chr3	GH03I023876	23876732	23878291	0.84	[{'connected_gene': 'ARL4AP4', 'score': 550.77}, {'connected_gene': 'UBE2E1-AS1', 'score': 12.43}, {'connected_gene': 'UBE2E1', 'score': 12.43}, {'connected_gene': 'RPL15', 'score': 11.76}, {'connected_gene': 'NKIRAS1', 'score': 11.69}, {'connected_gene': 'NR1D2', 'score': 11.18}, {'connected_gene': 'GC03M023860', 'score': 0.37}]
chr3	GH03I023904	23904996	23905324	0.22	[{'connected_gene': 'PIR33503', 'score': 0.39}, {'connected_gene': 'RPL15', 'score': 0.39}, {'connected_gene': 'NKIRAS1', 'score': 0.26}]
chr3	GH03I023894	23894103	23894454	0.47	[{'connected_gene': 'PIR33503', 'score': 550.77}, {'connected_gene': 'RPL15', 'score': 0.34}, {'connected_gene': 'NKIRAS1', 'score': 0.23}]