PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377741	[[142366599, 142368047], [142377300, 142377367]]	[[142366946, 142368023]]
NM_005293	[[142366584, 142368047], [142377300, 142377365]]	[[142366946, 142368023]]

Promoter

Chrom	Start	End	Description
chr8	142377376	142377391	CAGE_peak_1_at_GPR20_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I141318	141318242	141318391	0.72	[{'connected_gene': 'LINC01300', 'score': 12.98}, {'connected_gene': 'GPR20', 'score': 12.89}, {'connected_gene': 'LOC105375787', 'score': 10.06}, {'connected_gene': 'ENSG00000253307', 'score': 10.05}, {'connected_gene': 'ENSG00000254291', 'score': 0.44}, {'connected_gene': 'SLC45A4', 'score': 0.39}]
chr8	GH08I141350	141350636	141353814	0.97	[{'connected_gene': 'LINC01300', 'score': 7.89}, {'connected_gene': 'ENSG00000261655', 'score': 0.77}, {'connected_gene': 'GPR20', 'score': 0.37}]
chr8	GH08I141311	141311500	141312670	0.79	[{'connected_gene': 'SLC45A4', 'score': 12.63}, {'connected_gene': 'LINC01300', 'score': 9.11}, {'connected_gene': 'GPR20', 'score': 4.82}, {'connected_gene': 'ENSG00000254291', 'score': 0.39}]
chr8	GH08I141225	141225771	141229211	2.3	[{'connected_gene': 'SLC45A4', 'score': 606.65}, {'connected_gene': 'ENSG00000280035', 'score': 550.77}, {'connected_gene': 'DENND3', 'score': 35.27}, {'connected_gene': 'LOC105375787', 'score': 13.16}, {'connected_gene': 'ENSG00000253307', 'score': 13.16}, {'connected_gene': 'LINC01300', 'score': 12.58}, {'connected_gene': 'GPR20', 'score': 12.56}, {'connected_gene': 'PTP4A3', 'score': 1.57}]
chr8	GH08I141368	141368475	141369624	1.12	[{'connected_gene': 'GPR20', 'score': 550.77}, {'connected_gene': 'LOC101928037', 'score': 0.44}]
chr8	GH08I141365	141365836	141367632	1.6	[{'connected_gene': 'GPR20', 'score': 550.77}, {'connected_gene': 'ENSG00000254291', 'score': 5.46}, {'connected_gene': 'ENSG00000261655', 'score': 0.39}]
chr8	GH08I141391	141391387	141393307	1.63	[{'connected_gene': 'LOC105375790', 'score': 550.77}, {'connected_gene': 'PTP4A3', 'score': 550.77}, {'connected_gene': 'ENSG00000244998', 'score': 550.77}, {'connected_gene': 'GPR20', 'score': 7.91}, {'connected_gene': 'LINC01300', 'score': 5.51}]
chr8	GH08I141374	141374441	141376870	1.4	[{'connected_gene': 'LOC101928037', 'score': 550.77}, {'connected_gene': 'GPR20', 'score': 7.41}, {'connected_gene': 'SLC45A4', 'score': 6.78}, {'connected_gene': 'LOC105375790', 'score': 0.37}]
chr8	GH08I141375	141374001	141374400	0.58	[{'connected_gene': 'LOC101928037', 'score': 550.77}, {'connected_gene': 'GPR20', 'score': 6.93}, {'connected_gene': 'LOC105375790', 'score': 0.37}]
chr8	GH08I141372	141372729	141373706	0.63	[{'connected_gene': 'LOC101928037', 'score': 550.77}, {'connected_gene': 'GPR20', 'score': 0.44}]
chr8	GH08I141356	141356286	141357026	0.84	[{'connected_gene': 'ENSG00000261655', 'score': 550.77}, {'connected_gene': 'LINC01300', 'score': 7.3}, {'connected_gene': 'GPR20', 'score': 0.39}]
chr8	GH08I141358	141358188	141361659	1.07	[{'connected_gene': 'ENSG00000261655', 'score': 7.09}, {'connected_gene': 'GPR20', 'score': 0.44}]
chr8	GH08I141093	141093360	141097271	1.55	[{'connected_gene': 'GC08M141090', 'score': 550.77}, {'connected_gene': 'DENND3', 'score': 44.83}, {'connected_gene': 'SLC45A4', 'score': 26.81}, {'connected_gene': 'LOC101927963', 'score': 12.2}, {'connected_gene': 'AGO2', 'score': 3.7}, {'connected_gene': 'PTP4A3', 'score': 1.45}, {'connected_gene': 'GPR20', 'score': 1.22}, {'connected_gene': 'GC08P141112', 'score': 0.37}]