PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000441199	[[4688579, 4688954], [4689195, 4689347], [4689452, 4689666]]	[[4689197, 4689347], [4689452, 4689647]]
ENST00000416307	[[4688579, 4688954], [4689251, 4689347], [4689452, 4689693]]	[[4688936, 4688954], [4689251, 4689347], [4689452, 4689647]]
ENST00000328739	[[4688579, 4688954], [4689231, 4689347], [4689452, 4689727]]	[[4688656, 4688954], [4689231, 4689347], [4689452, 4689647]]
ENST00000354194	[[4688579, 4688954], [4689452, 4689728]]	[[4688936, 4688954], [4689452, 4689647]]
NM_001144939	[[4688579, 4688954], [4689195, 4689347], [4689452, 4689729]]	[[4689197, 4689347], [4689452, 4689647]]
NM_182566	[[4688579, 4688954], [4689231, 4689347], [4689452, 4689729]]	[[4688656, 4688954], [4689231, 4689347], [4689452, 4689647]]
NM_001144940	[[4688579, 4688954], [4689251, 4689347], [4689452, 4689729]]	[[4688936, 4688954], [4689251, 4689347], [4689452, 4689647]]
NM_001144941	[[4688579, 4688954], [4689452, 4689729]]	[[4688936, 4688954], [4689452, 4689647]]

Promoter

Chrom	Start	End	Description
chr17	4689649	4689671	CAGE_peak_1_at_VMO1_5end
chr17	4689735	4689745	CAGE_peak_2_at_VMO1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I004769	4769754	4772839	1.85	[{'connected_gene': 'TM4SF5', 'score': 550.77}, {'connected_gene': 'CXCL16', 'score': 16.17}, {'connected_gene': 'ZMYND15', 'score': 9.46}, {'connected_gene': 'VMO1', 'score': 8.49}, {'connected_gene': 'ENSG00000262165', 'score': 6.03}, {'connected_gene': 'ARRB2', 'score': 4.92}, {'connected_gene': 'SPAG7', 'score': 1.99}, {'connected_gene': 'MINK1', 'score': 1.55}, {'connected_gene': 'SCIMP', 'score': 1.49}, {'connected_gene': 'GC17M004737', 'score': 0.21}]
chr17	GH17I004747	4747456	4748800	0.99	[{'connected_gene': 'ZNF594', 'score': 18.13}, {'connected_gene': 'CXCL16', 'score': 17.26}, {'connected_gene': 'LOC100130950', 'score': 16.45}, {'connected_gene': 'ZMYND15', 'score': 12.82}, {'connected_gene': 'RNU6-955P', 'score': 11.03}, {'connected_gene': 'PELP1', 'score': 10.11}, {'connected_gene': 'ENO3', 'score': 9.64}, {'connected_gene': 'PFN1', 'score': 9.64}, {'connected_gene': 'ARRB2', 'score': 8.79}, {'connected_gene': 'SCIMP', 'score': 7.27}, {'connected_gene': 'LOC102724009', 'score': 5.26}, {'connected_gene': 'C17orf107', 'score': 1.52}, {'connected_gene': 'VMO1', 'score': 1.43}, {'connected_gene': 'MINK1', 'score': 1.4}, {'connected_gene': 'TM4SF5', 'score': 0.34}, {'connected_gene': 'GC17M004737', 'score': 0.18}]
chr17	GH17I004764	4764202	4767600	1.03	[{'connected_gene': 'ZMYND15', 'score': 18.78}, {'connected_gene': 'CXCL16', 'score': 17.73}, {'connected_gene': 'ARRB2', 'score': 16.22}, {'connected_gene': 'C17orf107', 'score': 11.75}, {'connected_gene': 'VMO1', 'score': 7.98}, {'connected_gene': 'ENSG00000262165', 'score': 6.16}, {'connected_gene': 'SCIMP', 'score': 3.3}, {'connected_gene': 'MINK1', 'score': 2.49}, {'connected_gene': 'SPAG7', 'score': 1.76}, {'connected_gene': 'TM4SF5', 'score': 0.44}, {'connected_gene': 'GC17M004737', 'score': 0.2}]
chr17	GH17I004846	4846866	4847015	0.69	[{'connected_gene': 'PLD2', 'score': 12.83}, {'connected_gene': 'ARRB2', 'score': 11.7}, {'connected_gene': 'GLTPD2', 'score': 11.69}, {'connected_gene': 'PELP1', 'score': 11.69}, {'connected_gene': 'LOC101559451', 'score': 11.69}, {'connected_gene': 'RPS12P29', 'score': 11.69}, {'connected_gene': 'VMO1', 'score': 11.68}, {'connected_gene': 'CXCL16', 'score': 10.6}, {'connected_gene': 'ZMYND15', 'score': 10.6}, {'connected_gene': 'MINK1', 'score': 0.39}, {'connected_gene': 'ATP6V0CP1', 'score': 0.39}]
chr17	GH17I004583	4583432	4589752	2.07	[{'connected_gene': 'SMTNL2', 'score': 567.91}, {'connected_gene': 'GGT6', 'score': 19.65}, {'connected_gene': 'RNU6-955P', 'score': 12.79}, {'connected_gene': 'ALOX15', 'score': 12.45}, {'connected_gene': 'SHPK', 'score': 11.62}, {'connected_gene': 'DERL2', 'score': 10.37}, {'connected_gene': 'VMO1', 'score': 5.21}, {'connected_gene': 'LINC01996', 'score': 0.34}]
chr17	GH17I004780	4780437	4781080	0.31	[{'connected_gene': 'VMO1', 'score': 9.41}, {'connected_gene': 'TM4SF5', 'score': 0.44}, {'connected_gene': 'GC17M004737', 'score': 0.23}]
chr17	GH17I004759	4759433	4760423	1.15	[{'connected_gene': 'VMO1', 'score': 6.15}, {'connected_gene': 'ZNF232', 'score': 3.38}, {'connected_gene': 'ZMYND15', 'score': 3.1}, {'connected_gene': 'SCIMP', 'score': 2.26}, {'connected_gene': 'ARRB2', 'score': 2.04}, {'connected_gene': 'CXCL16', 'score': 1.96}, {'connected_gene': 'TM4SF5', 'score': 0.39}, {'connected_gene': 'GC17M004737', 'score': 0.19}]
chr17	GH17I004786	4786093	4791385	2.07	[{'connected_gene': 'VMO1', 'score': 564.08}, {'connected_gene': 'ENSG00000280254', 'score': 550.77}, {'connected_gene': 'GLTPD2', 'score': 550.77}, {'connected_gene': 'ZNF594', 'score': 18.14}, {'connected_gene': 'LOC100130950', 'score': 16.45}, {'connected_gene': 'PELP1', 'score': 10.03}, {'connected_gene': 'RNF167', 'score': 5.81}, {'connected_gene': 'PSMB6', 'score': 0.44}, {'connected_gene': 'GC17M004737', 'score': 0.26}]
chr17	GH17I004842	4842801	4846199	1.09	[{'connected_gene': 'CHRNE', 'score': 36.89}, {'connected_gene': 'ARRB2', 'score': 19.83}, {'connected_gene': 'ZMYND15', 'score': 16.86}, {'connected_gene': 'CXCL16', 'score': 13.78}, {'connected_gene': 'C17orf107', 'score': 13.68}, {'connected_gene': 'PLD2', 'score': 12.83}, {'connected_gene': 'ENO3', 'score': 12.74}, {'connected_gene': 'PSMB6', 'score': 11.92}, {'connected_gene': 'RPS12P29', 'score': 11.7}, {'connected_gene': 'VMO1', 'score': 11.69}, {'connected_gene': 'GLTPD2', 'score': 11.69}, {'connected_gene': 'PELP1', 'score': 11.69}, {'connected_gene': 'LOC101559451', 'score': 11.69}, {'connected_gene': 'SCIMP', 'score': 2.9}, {'connected_gene': 'MINK1', 'score': 2.67}, {'connected_gene': 'ATP6V0CP1', 'score': 0.39}]
chr17	GH17I004837	4837162	4841055	1.05	[{'connected_gene': 'CHRNE', 'score': 38.43}, {'connected_gene': 'ENO3', 'score': 21.15}, {'connected_gene': 'SPAG7', 'score': 16.88}, {'connected_gene': 'PLD2', 'score': 12.23}, {'connected_gene': 'VMO1', 'score': 11.4}, {'connected_gene': 'GLTPD2', 'score': 11.4}, {'connected_gene': 'CXCL16', 'score': 11.03}, {'connected_gene': 'ZMYND15', 'score': 11.03}, {'connected_gene': 'ENSG00000234203', 'score': 10.7}, {'connected_gene': 'PFN1', 'score': 10.62}, {'connected_gene': 'SLC25A11', 'score': 10.49}, {'connected_gene': 'RNF167', 'score': 10.49}, {'connected_gene': 'CAMTA2', 'score': 10.12}, {'connected_gene': 'ENSG00000262165', 'score': 8.85}, {'connected_gene': 'ZNF594', 'score': 4.96}, {'connected_gene': 'MINK1', 'score': 0.44}, {'connected_gene': 'ATP6V0CP1', 'score': 0.37}]
chr17	GH17I004847	4847426	4851837	1.33	[{'connected_gene': 'CHRNE', 'score': 39.43}, {'connected_gene': 'ENO3', 'score': 22.59}, {'connected_gene': 'PFN1', 'score': 15.0}, {'connected_gene': 'ZMYND15', 'score': 14.98}, {'connected_gene': 'ARRB2', 'score': 14.73}, {'connected_gene': 'C17orf107', 'score': 14.25}, {'connected_gene': 'PLD2', 'score': 12.81}, {'connected_gene': 'CXCL16', 'score': 12.37}, {'connected_gene': 'PELP1', 'score': 11.69}, {'connected_gene': 'LOC101559451', 'score': 11.69}, {'connected_gene': 'RPS12P29', 'score': 11.69}, {'connected_gene': 'VMO1', 'score': 11.68}, {'connected_gene': 'GLTPD2', 'score': 11.68}, {'connected_gene': 'RNU6-955P', 'score': 10.19}, {'connected_gene': 'ENSG00000262165', 'score': 6.83}, {'connected_gene': 'MINK1', 'score': 3.19}, {'connected_gene': 'RNF167', 'score': 2.66}, {'connected_gene': 'UBE2G1', 'score': 2.22}, {'connected_gene': 'ZNF232', 'score': 1.83}, {'connected_gene': 'RABEP1', 'score': 1.28}, {'connected_gene': 'CAMTA2', 'score': 1.27}, {'connected_gene': 'ATP6V0CP1', 'score': 0.44}]