PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000301459	[[63678692, 63679651], [63679776, 63680006], [63680147, 63680205], [63680341, 63680419], [63681425, 63681641], [63681732, 63681802], [63681888, 63682013], [63682126, 63682288], [63682373, 63682426], [63682649, 63682730], [63683026, 63683083], [63683801, 63684316]]	[[63679336, 63679651], [63679776, 63680006], [63680147, 63680205], [63680341, 63680419], [63681425, 63681641], [63681732, 63681802], [63681888, 63682013], [63682126, 63682288], [63682373, 63682426], [63682649, 63682730], [63683026, 63683083], [63683801, 63683928]]
ENST00000489217	[[63679359, 63680006], [63680147, 63680205], [63680341, 63680428]]	None
ENST00000473926	[[63679426, 63679651], [63679728, 63679779]]	None
NM_173587	[[63678692, 63679651], [63679776, 63680006], [63680147, 63680205], [63680341, 63680419], [63681425, 63681641], [63681732, 63681802], [63681888, 63682013], [63682126, 63682288], [63682373, 63682426], [63682649, 63682730], [63683026, 63683083], [63683801, 63684316]]	[[63679336, 63679651], [63679776, 63680006], [63680147, 63680205], [63680341, 63680419], [63681425, 63681641], [63681732, 63681802], [63681888, 63682013], [63682126, 63682288], [63682373, 63682426], [63682649, 63682730], [63683026, 63683083], [63683801, 63683928]]

Promoter

Chrom	Start	End	Description
chr11	63684602	63684664	CAGE_peak_1_at_RCOR2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I063937	63937499	63940298	2.04	[{'connected_gene': 'NAA40', 'score': 550.77}, {'connected_gene': 'SF1', 'score': 11.47}, {'connected_gene': 'RTN3', 'score': 5.14}, {'connected_gene': 'RCOR2', 'score': 5.14}, {'connected_gene': 'GC11M063921', 'score': 0.39}, {'connected_gene': 'GC11P063909', 'score': 0.29}, {'connected_gene': 'GC11P063911', 'score': 0.29}]
chr11	GH11I064267	64267086	64274313	1.82	[{'connected_gene': 'GPR137', 'score': 550.77}, {'connected_gene': 'ZFPL1', 'score': 34.68}, {'connected_gene': 'SF1', 'score': 32.9}, {'connected_gene': 'POLA2', 'score': 32.78}, {'connected_gene': 'PLCB3', 'score': 27.53}, {'connected_gene': 'TRMT112', 'score': 23.09}, {'connected_gene': 'DNAJC4', 'score': 21.3}, {'connected_gene': 'ENSG00000257086', 'score': 20.68}, {'connected_gene': 'FAU', 'score': 20.2}, {'connected_gene': 'LOC102723878', 'score': 19.24}, {'connected_gene': 'TRPT1', 'score': 17.08}, {'connected_gene': 'NAALADL1', 'score': 15.12}, {'connected_gene': 'NRXN2', 'score': 13.07}, {'connected_gene': 'KCNK4', 'score': 12.91}, {'connected_gene': 'SPINDOC', 'score': 12.7}, {'connected_gene': 'ATL3', 'score': 12.19}, {'connected_gene': 'ESRRA', 'score': 11.38}, {'connected_gene': 'ZNHIT2', 'score': 11.22}, {'connected_gene': 'RCOR2', 'score': 11.14}, {'connected_gene': 'PRDX5', 'score': 10.91}, {'connected_gene': 'PPP2R5B', 'score': 10.6}, {'connected_gene': 'C11orf95', 'score': 10.12}, {'connected_gene': 'ENSG00000231680', 'score': 9.23}, {'connected_gene': 'CCDC88B', 'score': 4.54}, {'connected_gene': 'GC11P064262', 'score': 0.44}, {'connected_gene': 'BAD', 'score': 0.39}]
chr11	GH11I063915	63915419	63921513	1.95	[{'connected_gene': 'RCOR2', 'score': 554.17}, {'connected_gene': 'OTUB1', 'score': 6.44}, {'connected_gene': 'LGALS12', 'score': 2.26}, {'connected_gene': 'GC11P063909', 'score': 0.44}, {'connected_gene': 'GC11M063921', 'score': 0.44}, {'connected_gene': 'GC11P063911', 'score': 0.44}]
chr11	GH11I063912	63912468	63913170	0.46	[{'connected_gene': 'MARK2', 'score': 12.45}, {'connected_gene': 'NAA40', 'score': 12.22}, {'connected_gene': 'RNU6-1306P', 'score': 12.2}, {'connected_gene': 'PLA2G16', 'score': 4.73}, {'connected_gene': 'PIR46613', 'score': 0.77}, {'connected_gene': 'GC11P063911', 'score': 0.77}, {'connected_gene': 'GC11P063909', 'score': 0.77}, {'connected_gene': 'RCOR2', 'score': 0.77}]
chr11	GH11I064372	64372748	64374083	1.29	[{'connected_gene': 'LOC102723878', 'score': 21.83}, {'connected_gene': 'NRXN2', 'score': 5.48}, {'connected_gene': 'RCOR2', 'score': 4.55}, {'connected_gene': 'KCNK4', 'score': 3.49}, {'connected_gene': 'NAA40', 'score': 3.02}, {'connected_gene': 'GPR137', 'score': 1.93}, {'connected_gene': 'CDC42BPG', 'score': 1.61}, {'connected_gene': 'MIR1237', 'score': 0.77}, {'connected_gene': 'GC11M064381', 'score': 0.44}]
chr11	GH11I063908	63908281	63911259	0.74	[{'connected_gene': 'PIR50128', 'score': 550.77}, {'connected_gene': 'PIR46613', 'score': 550.77}, {'connected_gene': 'GC11P063911', 'score': 550.77}, {'connected_gene': 'GC11P063909', 'score': 550.77}, {'connected_gene': 'MARK2', 'score': 12.45}, {'connected_gene': 'RNU6-1306P', 'score': 12.39}, {'connected_gene': 'NAA40', 'score': 12.26}, {'connected_gene': 'SPINDOC', 'score': 11.75}, {'connected_gene': 'MACROD1', 'score': 10.29}, {'connected_gene': 'ENSG00000256341', 'score': 9.98}, {'connected_gene': 'ENSG00000256481', 'score': 9.92}, {'connected_gene': 'PLA2G16', 'score': 4.73}, {'connected_gene': 'RCOR2', 'score': 0.44}]