PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000421054	[[25276775, 25276976], [25279088, 25279184], [25280705, 25280847], [25281716, 25281747]]	[[25276934, 25276976], [25279088, 25279184]]
ENST00000276414	[[25276777, 25276976], [25279088, 25279184], [25280705, 25282170]]	[[25276934, 25276976], [25279088, 25279184], [25280705, 25280846]]
NM_000825	[[25276773, 25276976], [25279088, 25279184], [25280705, 25282556]]	[[25276934, 25276976], [25279088, 25279184], [25280705, 25280858]]
NM_001083111	[[25276773, 25276976], [25279088, 25279184], [25280705, 25280847], [25281716, 25282556]]	[[25276934, 25276976], [25279088, 25279184]]

Promoter

Chrom	Start	End	Description
chr8	25281776	25281779	CAGE_peak_1_at_GNRH1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I025271	25271745	25271954	0.58	[{'connected_gene': 'DOCK5', 'score': 11.52}, {'connected_gene': 'GNRH1', 'score': 10.92}, {'connected_gene': 'CDCA2', 'score': 9.4}, {'connected_gene': 'KCTD9', 'score': 9.4}, {'connected_gene': 'GC08M025303', 'score': 0.29}]
chr8	GH08I025275	25275665	25276939	0.78	[{'connected_gene': 'DOCK5', 'score': 11.5}, {'connected_gene': 'GNRH1', 'score': 11.04}, {'connected_gene': 'GC08M025303', 'score': 0.31}]
chr8	GH08I025392	25392423	25393716	0.95	[{'connected_gene': 'KCTD9', 'score': 19.08}, {'connected_gene': 'GNRH1', 'score': 12.63}, {'connected_gene': 'CDCA2', 'score': 10.8}, {'connected_gene': 'PIR37075', 'score': 0.39}, {'connected_gene': 'GC08P025414', 'score': 0.34}, {'connected_gene': 'GC08M025389', 'score': 0.26}, {'connected_gene': 'DOCK5', 'score': 0.08}]
chr8	GH08I025453	25453902	25460574	2.3	[{'connected_gene': 'KCTD9', 'score': 560.82}, {'connected_gene': 'CDCA2', 'score': 550.77}, {'connected_gene': 'GNRH1', 'score': 22.58}, {'connected_gene': 'ENSG00000253476', 'score': 11.5}, {'connected_gene': 'NEFM', 'score': 4.38}, {'connected_gene': 'GC08P025445', 'score': 0.39}]
chr8	GH08I025269	25269494	25270677	0.43	[{'connected_gene': 'GNRH1', 'score': 10.53}, {'connected_gene': 'GC08M025303', 'score': 0.28}, {'connected_gene': 'DOCK5', 'score': 0.17}]
chr8	GH08I025997	25997399	26000414	0.97	[{'connected_gene': 'GNRH1', 'score': 30.45}, {'connected_gene': 'ENSG00000253476', 'score': 14.57}, {'connected_gene': 'EBF2', 'score': 11.82}, {'connected_gene': 'KCTD9', 'score': 10.17}, {'connected_gene': 'GC08M025942', 'score': 0.22}]
chr8	GH08I025367	25365064	25365951	0.31	[{'connected_gene': 'GNRH1', 'score': 11.29}, {'connected_gene': 'CDCA2', 'score': 10.48}, {'connected_gene': 'KCTD9', 'score': 10.48}, {'connected_gene': 'DOCK5', 'score': 5.56}, {'connected_gene': 'LOC105379331', 'score': 0.77}, {'connected_gene': 'PIR37075', 'score': 0.39}]
chr8	GH08I025370	25370482	25371082	0.31	[{'connected_gene': 'GNRH1', 'score': 11.44}, {'connected_gene': 'CDCA2', 'score': 10.93}, {'connected_gene': 'KCTD9', 'score': 10.93}, {'connected_gene': 'DOCK5', 'score': 6.46}, {'connected_gene': 'PIR37075', 'score': 0.44}, {'connected_gene': 'LOC105379331', 'score': 0.44}]
chr8	GH08I025366	25366934	25367455	0.31	[{'connected_gene': 'GNRH1', 'score': 11.43}, {'connected_gene': 'CDCA2', 'score': 10.92}, {'connected_gene': 'KCTD9', 'score': 10.92}, {'connected_gene': 'DOCK5', 'score': 5.44}, {'connected_gene': 'LOC105379331', 'score': 0.44}, {'connected_gene': 'PIR37075', 'score': 0.39}]
chr8	GH08I025369	25369296	25370379	0.2	[{'connected_gene': 'GNRH1', 'score': 11.43}, {'connected_gene': 'CDCA2', 'score': 10.93}, {'connected_gene': 'KCTD9', 'score': 10.93}, {'connected_gene': 'DOCK5', 'score': 6.39}, {'connected_gene': 'PIR37075', 'score': 0.44}, {'connected_gene': 'LOC105379331', 'score': 0.44}]
chr8	GH08I025368	25367835	25368407	0.63	[{'connected_gene': 'GNRH1', 'score': 16.64}, {'connected_gene': 'CDCA2', 'score': 10.92}, {'connected_gene': 'KCTD9', 'score': 10.92}, {'connected_gene': 'DOCK5', 'score': 4.52}, {'connected_gene': 'LOC105379331', 'score': 0.44}, {'connected_gene': 'PIR37075', 'score': 0.39}]
chr8	GH08I025318	25318100	25321049	1.23	[{'connected_gene': 'GNRH1', 'score': 11.24}, {'connected_gene': 'CDCA2', 'score': 10.37}, {'connected_gene': 'KCTD9', 'score': 10.37}, {'connected_gene': 'GC08M025315', 'score': 0.77}, {'connected_gene': 'GC08M025303', 'score': 0.39}, {'connected_gene': 'DOCK5', 'score': 0.12}]
chr8	GH08I025390	25390941	25391655	0.31	[{'connected_gene': 'GNRH1', 'score': 12.63}, {'connected_gene': 'CDCA2', 'score': 10.8}, {'connected_gene': 'KCTD9', 'score': 10.8}, {'connected_gene': 'NEFM', 'score': 4.35}, {'connected_gene': 'PIR37075', 'score': 0.39}, {'connected_gene': 'GC08P025414', 'score': 0.34}, {'connected_gene': 'GC08M025389', 'score': 0.26}, {'connected_gene': 'DOCK5', 'score': 0.08}]
chr8	GH08I025365	25365981	25366562	0.49	[{'connected_gene': 'GNRH1', 'score': 11.29}, {'connected_gene': 'CDCA2', 'score': 10.48}, {'connected_gene': 'KCTD9', 'score': 10.48}, {'connected_gene': 'LOC105379331', 'score': 0.77}, {'connected_gene': 'PIR37075', 'score': 0.39}, {'connected_gene': 'DOCK5', 'score': 0.09}]
chr8	GH08I025328	25328625	25328774	0.58	[{'connected_gene': 'GNRH1', 'score': 11.53}, {'connected_gene': 'CDCA2', 'score': 10.18}, {'connected_gene': 'KCTD9', 'score': 10.18}, {'connected_gene': 'GC08M025315', 'score': 0.44}, {'connected_gene': 'MIR6876', 'score': 0.37}, {'connected_gene': 'DOCK5', 'score': 0.11}]
chr8	GH08I025329	25328305	25328454	0.4	[{'connected_gene': 'GNRH1', 'score': 11.53}, {'connected_gene': 'CDCA2', 'score': 10.17}, {'connected_gene': 'KCTD9', 'score': 10.17}, {'connected_gene': 'GC08M025315', 'score': 0.44}, {'connected_gene': 'MIR6876', 'score': 0.37}, {'connected_gene': 'DOCK5', 'score': 0.11}]
chr8	GH08I025461	25461401	25461600	0.2	[{'connected_gene': 'GNRH1', 'score': 10.16}, {'connected_gene': 'CDCA2', 'score': 0.77}, {'connected_gene': 'GC08P025445', 'score': 0.37}, {'connected_gene': 'GC08P025504', 'score': 0.26}]
chr8	GH08I025424	25424251	25424310	0.61	[{'connected_gene': 'GNRH1', 'score': 550.77}, {'connected_gene': 'GC08P025414', 'score': 0.44}, {'connected_gene': 'GC08M025389', 'score': 0.39}]
chr8	GH08I025425	25424692	25424751	0.5	[{'connected_gene': 'GNRH1', 'score': 550.77}, {'connected_gene': 'ENSG00000253476', 'score': 550.77}, {'connected_gene': 'GC08P025414', 'score': 0.44}, {'connected_gene': 'GC08M025389', 'score': 0.39}]
chr8	GH08I025321	25321816	25324403	0.46	[{'connected_gene': 'GC08M025315', 'score': 550.77}, {'connected_gene': 'DOCK5', 'score': 11.18}, {'connected_gene': 'GNRH1', 'score': 11.0}, {'connected_gene': 'MIR6876', 'score': 0.34}]
chr8	GH08I025307	25307524	25310297	1.1	[{'connected_gene': 'ENSG00000253476', 'score': 13.72}, {'connected_gene': 'GNRH1', 'score': 11.6}, {'connected_gene': 'DOCK5', 'score': 5.13}, {'connected_gene': 'GC08M025303', 'score': 0.77}, {'connected_gene': 'GC08M025315', 'score': 0.39}]
chr8	GH08I025418	25418265	25418454	0.76	[{'connected_gene': 'GC08P025414', 'score': 0.77}, {'connected_gene': 'GNRH1', 'score': 0.44}, {'connected_gene': 'GC08M025389', 'score': 0.37}]
chr8	GH08I026348	26348938	26351112	0.46	[{'connected_gene': 'GC08M026286', 'score': 550.77}, {'connected_gene': 'SDAD1P1', 'score': 18.65}, {'connected_gene': 'GNRH1', 'score': 10.24}, {'connected_gene': 'BNIP3L', 'score': 0.29}, {'connected_gene': 'PPP2R2A', 'score': 0.22}]